Wall clock time and date at job start Mon Mar 30 2020 03:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35312 * 126.04216 * 2 1 4 4 N 1.34945 * 107.74930 * 180.26864 * 3 2 1 5 5 H 0.96999 * 126.04208 * 179.74568 * 4 3 2 6 6 N 1.40081 * 107.92654 * 359.75583 * 4 3 2 7 7 C 1.30842 * 108.20303 * 359.97438 * 6 4 3 8 8 C 1.50697 * 125.89990 * 179.97438 * 7 6 4 9 9 N 1.46901 * 109.46985 * 90.02710 * 8 7 6 10 10 C 1.48567 * 111.00166 * 285.41902 * 9 8 7 11 11 C 1.54381 * 104.59774 * 200.95842 * 10 9 8 12 12 C 1.54266 * 105.05708 * 23.85531 * 11 10 9 13 13 C 1.48561 * 111.00120 * 170.00103 * 9 8 7 14 14 H 1.09000 * 110.51304 * 40.21279 * 13 9 8 15 15 C 1.50694 * 110.41049 * 277.81955 * 13 9 8 16 16 H 1.08000 * 120.00563 * 3.37211 * 15 13 9 17 17 C 1.37885 * 119.99902 * 183.37374 * 15 13 9 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 H 1.09005 * 109.47583 * 270.14091 * 1 2 3 24 24 H 1.08999 * 109.47529 * 30.14463 * 1 2 3 25 25 H 1.08998 * 109.47135 * 150.14153 * 1 2 3 26 26 H 1.08007 * 126.12330 * 0.02696 * 3 2 1 27 27 H 1.09008 * 109.47421 * 330.03112 * 8 7 6 28 28 H 1.08996 * 109.47592 * 210.02283 * 8 7 6 29 29 H 1.09005 * 110.41098 * 82.17954 * 10 9 8 30 30 H 1.09001 * 110.41341 * 319.74161 * 10 9 8 31 31 H 1.08998 * 110.32402 * 264.96062 * 11 10 9 32 32 H 1.08996 * 110.40580 * 142.79035 * 11 10 9 33 33 H 1.09003 * 110.31929 * 241.10182 * 12 11 10 34 34 H 1.08997 * 110.40772 * 118.94424 * 12 11 10 35 35 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3031 1.0941 0.0000 4 7 3.5843 0.6706 -0.0060 5 1 4.3724 1.2361 -0.0109 6 7 3.5754 -0.7302 -0.0042 7 6 2.3299 -1.1310 0.0033 8 6 1.8627 -2.5637 0.0072 9 7 1.7181 -3.0278 1.3934 10 6 3.0453 -3.2799 2.0116 11 6 2.7510 -4.2332 3.1898 12 6 1.4286 -4.9346 2.8170 13 6 1.0351 -4.3461 1.4451 14 1 1.3876 -4.9907 0.6398 15 6 -0.4587 -4.1678 1.3585 16 1 -0.8778 -3.1824 1.2181 17 6 -1.2907 -5.2628 1.4587 18 7 -0.7804 -6.4629 1.6292 19 14 -3.1424 -5.0416 1.3521 20 1 -3.8073 -6.3627 1.4868 21 1 -3.5975 -4.1444 2.4443 22 1 -3.4947 -4.4423 0.0399 23 1 -0.3634 0.0025 1.0277 24 1 -0.3634 0.8887 -0.5161 25 1 -0.3633 -0.8912 -0.5116 26 1 1.9723 2.1223 0.0004 27 1 2.5935 -3.1857 -0.5098 28 1 0.9012 -2.6338 -0.5014 29 1 3.4784 -2.3481 2.3756 30 1 3.7142 -3.7565 1.2950 31 1 2.6321 -3.6675 4.1139 32 1 3.5514 -4.9656 3.2952 33 1 0.6607 -4.7132 3.5583 34 1 1.5786 -6.0114 2.7383 35 1 -1.3657 -7.2332 1.7000 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259963954.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:07 Heat of formation + Delta-G solvation = 72.429213 kcal Electronic energy + Delta-G solvation = -16868.738634 eV Core-core repulsion = 14288.999761 eV Total energy + Delta-G solvation = -2579.738873 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.88339 -37.72952 -33.10100 -32.41057 -31.50466 -29.93176 -28.05182 -26.03602 -25.25717 -24.06816 -20.60873 -20.13473 -19.46773 -18.68293 -17.42605 -16.31573 -15.11453 -14.64778 -14.38312 -13.97753 -13.76654 -13.29250 -12.70365 -12.52202 -12.32520 -12.15890 -11.88375 -11.41072 -11.26510 -11.00819 -10.72657 -10.61328 -10.48547 -10.09945 -10.02364 -9.69362 -9.50548 -9.08872 -8.85104 -8.37299 -8.07288 -7.31551 -5.96917 -3.97688 2.17350 3.09755 3.17014 3.37024 3.41283 3.44296 4.47048 5.01197 5.06403 5.31464 5.37776 5.61134 5.65230 5.82715 5.89004 6.02537 6.15566 6.18246 6.33533 6.39286 6.45133 6.51260 6.63772 6.67001 6.77015 7.04742 7.14028 7.21001 7.43245 7.55286 7.64272 7.89449 8.03172 8.12744 8.26211 8.57218 9.07450 9.65796 11.13099 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.025925 B = 0.008228 C = 0.006590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.767975 B = 3402.153794 C = 4247.800450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.214 4.214 3 C 0.038 3.962 4 N -0.488 5.488 5 H 0.433 0.567 6 N -0.299 5.299 7 C 0.107 3.893 8 C 0.127 3.873 9 N -0.498 5.498 10 C 0.039 3.961 11 C -0.131 4.131 12 C -0.093 4.093 13 C 0.202 3.798 14 H 0.010 0.990 15 C -0.497 4.497 16 H 0.064 0.936 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.289 1.289 21 H -0.277 1.277 22 H -0.277 1.277 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.169 0.831 27 H 0.037 0.963 28 H 0.098 0.902 29 H 0.059 0.941 30 H 0.029 0.971 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.423 11.606 -2.378 13.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.226 4.226 3 C -0.108 4.108 4 N -0.196 5.196 5 H 0.276 0.724 6 N -0.122 5.122 7 C -0.061 4.061 8 C -0.003 4.003 9 N -0.223 5.223 10 C -0.090 4.090 11 C -0.169 4.169 12 C -0.132 4.132 13 C 0.096 3.904 14 H 0.027 0.973 15 C -0.536 4.536 16 H 0.082 0.918 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.723 3.277 20 H -0.215 1.215 21 H -0.203 1.203 22 H -0.203 1.203 23 H 0.084 0.916 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.186 0.814 27 H 0.055 0.945 28 H 0.116 0.884 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.257 11.461 -2.096 13.225 hybrid contribution -0.853 0.129 -0.425 0.961 sum 5.404 11.590 -2.520 13.034 Atomic orbital electron populations 1.20052 0.89217 1.01606 1.02141 1.20087 0.97421 0.91208 1.13867 1.22233 0.84843 0.99571 1.04143 1.46118 1.06763 1.05824 1.60868 0.72413 1.77270 1.20983 0.88336 1.25653 1.22388 0.89642 0.97100 0.96977 1.20476 1.00528 0.86725 0.92596 1.65383 1.13288 1.30158 1.13503 1.22976 0.91965 0.97807 0.96240 1.22405 0.99231 0.97742 0.97499 1.22188 0.93341 0.98619 0.99071 1.20212 0.94046 0.82978 0.93128 0.97269 1.20985 0.89859 0.93646 1.49090 0.91753 1.24942 0.98671 0.95193 0.95412 1.69969 1.34988 0.98310 1.50068 0.86614 0.85448 0.77032 0.78618 1.21531 1.20257 1.20297 0.91599 0.93057 0.91268 0.81379 0.94452 0.88397 0.92243 0.95261 0.92753 0.93229 0.92298 0.92250 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.18 36.00 0.37 -0.70 16 2 C -0.21 -3.45 6.10 -105.06 -0.64 -4.09 16 3 C 0.04 0.49 11.90 -17.23 -0.21 0.29 16 4 N -0.49 -6.48 7.36 30.45 0.22 -6.26 16 5 H 0.43 4.04 8.96 -182.61 -1.64 2.40 16 6 N -0.30 -5.25 12.70 33.67 0.43 -4.82 16 7 C 0.11 1.97 6.39 -82.40 -0.53 1.44 16 8 C 0.13 2.58 5.16 -4.98 -0.03 2.56 16 9 N -0.50 -11.11 5.00 -224.92 -1.12 -12.23 16 10 C 0.04 0.79 6.12 -2.18 -0.01 0.78 16 11 C -0.13 -2.64 7.00 -25.34 -0.18 -2.82 16 12 C -0.09 -2.25 5.57 -25.34 -0.14 -2.39 16 13 C 0.20 5.11 2.21 -67.22 -0.15 4.96 16 14 H 0.01 0.26 8.00 -51.93 -0.42 -0.15 16 15 C -0.50 -13.47 8.34 -34.44 -0.29 -13.76 16 16 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 17 C 0.06 1.62 5.33 -17.82 -0.09 1.53 16 18 N -0.89 -25.45 12.35 55.43 0.68 -24.77 16 19 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.07 1.10 7.25 -51.93 -0.38 0.73 16 26 H 0.17 1.45 8.06 -52.48 -0.42 1.03 16 27 H 0.04 0.76 7.77 -51.92 -0.40 0.35 16 28 H 0.10 2.02 6.89 -51.93 -0.36 1.67 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.03 0.59 7.75 -51.93 -0.40 0.19 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.06 1.51 7.85 -51.93 -0.41 1.10 16 34 H 0.06 1.49 7.94 -51.93 -0.41 1.08 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 289.85 15.07 4.37 4.37 Total: -1.00 -30.40 289.85 -8.83 -39.23 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -6.49 Total: 0.54 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -1.89 Total: -12.21 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.21 Total: -48.08 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.40 -8.83 -39.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259963954.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.656 kcal (2) G-P(sol) polarization free energy of solvation -30.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds