Wall clock time and date at job start Mon Mar 30 2020 03:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35312 * 126.04216 * 2 1 4 4 N 1.34945 * 107.74930 * 180.26864 * 3 2 1 5 5 H 0.96999 * 126.04208 * 179.74568 * 4 3 2 6 6 N 1.40081 * 107.92654 * 359.75583 * 4 3 2 7 7 C 1.30842 * 108.20303 * 359.97438 * 6 4 3 8 8 C 1.50697 * 125.89990 * 179.97438 * 7 6 4 9 9 N 1.46901 * 109.46985 * 90.02710 * 8 7 6 10 10 C 1.48567 * 111.00166 * 285.41902 * 9 8 7 11 11 C 1.54381 * 104.59774 * 200.95842 * 10 9 8 12 12 C 1.54266 * 105.05708 * 23.85531 * 11 10 9 13 13 C 1.48561 * 111.00120 * 170.00103 * 9 8 7 14 14 H 1.09000 * 110.51304 * 40.21279 * 13 9 8 15 15 C 1.50694 * 110.41049 * 277.81955 * 13 9 8 16 16 H 1.08000 * 120.00563 * 3.37211 * 15 13 9 17 17 C 1.37885 * 119.99902 * 183.37374 * 15 13 9 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 H 1.09005 * 109.47583 * 270.14091 * 1 2 3 24 24 H 1.08999 * 109.47529 * 30.14463 * 1 2 3 25 25 H 1.08998 * 109.47135 * 150.14153 * 1 2 3 26 26 H 1.08007 * 126.12330 * 0.02696 * 3 2 1 27 27 H 1.09008 * 109.47421 * 330.03112 * 8 7 6 28 28 H 1.08996 * 109.47592 * 210.02283 * 8 7 6 29 29 H 1.09005 * 110.41098 * 82.17954 * 10 9 8 30 30 H 1.09001 * 110.41341 * 319.74161 * 10 9 8 31 31 H 1.08998 * 110.32402 * 264.96062 * 11 10 9 32 32 H 1.08996 * 110.40580 * 142.79035 * 11 10 9 33 33 H 1.09003 * 110.31929 * 241.10182 * 12 11 10 34 34 H 1.08997 * 110.40772 * 118.94424 * 12 11 10 35 35 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3031 1.0941 0.0000 4 7 3.5843 0.6706 -0.0060 5 1 4.3724 1.2361 -0.0109 6 7 3.5754 -0.7302 -0.0042 7 6 2.3299 -1.1310 0.0033 8 6 1.8627 -2.5637 0.0072 9 7 1.7181 -3.0278 1.3934 10 6 3.0453 -3.2799 2.0116 11 6 2.7510 -4.2332 3.1898 12 6 1.4286 -4.9346 2.8170 13 6 1.0351 -4.3461 1.4451 14 1 1.3876 -4.9907 0.6398 15 6 -0.4587 -4.1678 1.3585 16 1 -0.8778 -3.1824 1.2181 17 6 -1.2907 -5.2628 1.4587 18 7 -0.7804 -6.4629 1.6292 19 14 -3.1424 -5.0416 1.3521 20 1 -3.8073 -6.3627 1.4868 21 1 -3.5975 -4.1444 2.4443 22 1 -3.4947 -4.4423 0.0399 23 1 -0.3634 0.0025 1.0277 24 1 -0.3634 0.8887 -0.5161 25 1 -0.3633 -0.8912 -0.5116 26 1 1.9723 2.1223 0.0004 27 1 2.5935 -3.1857 -0.5098 28 1 0.9012 -2.6338 -0.5014 29 1 3.4784 -2.3481 2.3756 30 1 3.7142 -3.7565 1.2950 31 1 2.6321 -3.6675 4.1139 32 1 3.5514 -4.9656 3.2952 33 1 0.6607 -4.7132 3.5583 34 1 1.5786 -6.0114 2.7383 35 1 -1.3657 -7.2332 1.7000 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259963954.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:07 Heat of formation + Delta-G solvation = 51.604769 kcal Electronic energy + Delta-G solvation = -16869.641649 eV Core-core repulsion = 14288.999761 eV Total energy + Delta-G solvation = -2580.641888 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.08487 -39.51923 -34.84793 -34.13367 -32.79649 -31.41129 -30.00622 -27.23255 -26.84678 -26.05112 -21.96125 -21.63929 -21.40222 -20.06857 -18.52471 -18.37202 -16.86864 -16.50811 -15.93791 -15.37449 -15.28502 -15.00642 -14.17301 -13.92702 -13.77400 -13.65357 -13.47254 -13.01453 -12.93711 -12.68140 -12.50317 -12.42273 -12.28003 -11.82131 -11.60142 -11.43675 -11.35963 -10.88567 -10.47285 -10.31630 -9.24117 -9.13535 -8.08105 -6.15821 1.02592 1.46790 1.48811 1.56116 1.81612 2.12847 2.47893 3.22627 3.51571 3.84794 3.93949 4.09025 4.19864 4.38040 4.44648 4.54025 4.67256 4.72564 4.81994 4.88982 5.03555 5.04740 5.07649 5.20419 5.25578 5.33570 5.44659 5.51153 5.66441 5.78582 5.79667 6.15810 6.39589 6.54597 6.61427 6.83862 6.94209 7.51405 9.01344 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.025925 B = 0.008228 C = 0.006590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.767975 B = 3402.153794 C = 4247.800450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.249 4.249 3 C 0.071 3.929 4 N -0.469 5.469 5 H 0.452 0.548 6 N -0.328 5.328 7 C 0.083 3.917 8 C 0.134 3.866 9 N -0.503 5.503 10 C 0.045 3.955 11 C -0.121 4.121 12 C -0.087 4.087 13 C 0.203 3.797 14 H -0.024 1.024 15 C -0.510 4.510 16 H 0.059 0.941 17 C 0.012 3.988 18 N -0.924 5.924 19 Si 0.958 3.042 20 H -0.287 1.287 21 H -0.271 1.271 22 H -0.269 1.269 23 H 0.052 0.948 24 H 0.084 0.916 25 H 0.045 0.955 26 H 0.221 0.779 27 H 0.027 0.973 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.029 0.971 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.037 0.963 34 H 0.040 0.960 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.627 14.221 -2.220 15.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.260 4.260 3 C -0.076 4.076 4 N -0.179 5.179 5 H 0.299 0.701 6 N -0.153 5.153 7 C -0.083 4.083 8 C 0.003 3.997 9 N -0.227 5.227 10 C -0.084 4.084 11 C -0.158 4.158 12 C -0.126 4.126 13 C 0.096 3.904 14 H -0.007 1.007 15 C -0.549 4.549 16 H 0.078 0.922 17 C -0.187 4.187 18 N -0.563 5.563 19 Si 0.784 3.216 20 H -0.212 1.212 21 H -0.197 1.197 22 H -0.194 1.194 23 H 0.071 0.929 24 H 0.103 0.897 25 H 0.064 0.936 26 H 0.238 0.762 27 H 0.046 0.954 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.492 14.093 -1.941 15.637 hybrid contribution -0.837 -0.597 -0.514 1.149 sum 5.654 13.496 -2.455 14.837 Atomic orbital electron populations 1.19988 0.88891 1.02118 1.01437 1.20333 0.98108 0.91515 1.16076 1.22893 0.83650 1.00894 1.00205 1.46159 1.08133 1.04610 1.59016 0.70100 1.77166 1.20589 0.90797 1.26742 1.22071 0.90806 0.96386 0.99075 1.20280 0.99594 0.88590 0.91217 1.65328 1.14340 1.28108 1.14965 1.22954 0.91036 0.98276 0.96085 1.22361 0.97573 0.97975 0.97941 1.21988 0.94966 0.97785 0.97884 1.20034 0.93675 0.84098 0.92570 1.00664 1.21224 0.91079 0.93530 1.49023 0.92229 1.25710 1.03107 0.94837 0.95019 1.70094 1.36442 0.98946 1.50846 0.85608 0.80041 0.77043 0.78947 1.21224 1.19668 1.19410 0.92893 0.89693 0.93606 0.76234 0.95440 0.89914 0.91203 0.95285 0.91207 0.90900 0.94384 0.94109 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.89 10.18 71.23 0.72 -1.17 16 2 C -0.25 -7.55 6.10 -20.15 -0.12 -7.68 16 3 C 0.07 1.54 11.90 83.54 0.99 2.53 16 4 N -0.47 -10.89 7.36 -57.59 -0.42 -11.31 16 5 H 0.45 6.66 8.96 -213.33 -1.91 4.75 16 6 N -0.33 -11.04 12.70 -47.38 -0.60 -11.64 16 7 C 0.08 3.01 6.39 43.10 0.28 3.29 16 8 C 0.13 5.61 5.16 85.56 0.44 6.05 16 9 N -0.50 -22.89 5.00 -865.52 -4.32 -27.21 16 10 C 0.04 1.82 6.12 86.45 0.53 2.34 16 11 C -0.12 -4.79 7.00 31.49 0.22 -4.57 16 12 C -0.09 -4.31 5.57 31.49 0.18 -4.13 16 13 C 0.20 10.65 2.21 44.32 0.10 10.75 16 14 H -0.02 -1.41 8.00 -2.39 -0.02 -1.42 16 15 C -0.51 -28.50 8.34 25.60 0.21 -28.28 16 16 H 0.06 3.31 7.81 -2.91 -0.02 3.29 16 17 C 0.01 0.67 5.33 84.66 0.45 1.12 16 18 N -0.92 -54.00 12.35 21.45 0.26 -53.73 16 19 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 20 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 24 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.04 1.48 7.25 -2.39 -0.02 1.46 16 26 H 0.22 2.39 8.06 -2.91 -0.02 2.36 16 27 H 0.03 1.17 7.77 -2.38 -0.02 1.16 16 28 H 0.08 3.64 6.89 -2.39 -0.02 3.62 16 29 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 30 H 0.03 1.17 7.75 -2.39 -0.02 1.15 16 31 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.04 1.99 7.85 -2.39 -0.02 1.97 16 34 H 0.04 2.12 7.94 -2.39 -0.02 2.10 16 35 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -67.34 289.85 0.11 -67.23 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -0.83 Total: 10.43 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 4.00 Total: -19.74 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -5.08 Total: -103.90 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -67.34 0.11 -67.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259963954.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.836 kcal (2) G-P(sol) polarization free energy of solvation -67.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds