Wall clock time and date at job start Mon Mar 30 2020 03:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35317 * 126.04137 * 2 1 4 4 N 1.34940 * 107.74438 * 180.20917 * 3 2 1 5 5 H 0.97004 * 126.03820 * 179.77261 * 4 3 2 6 6 N 1.40088 * 107.93023 * 359.63568 * 4 3 2 7 7 C 1.30838 * 108.20068 * 0.36844 * 6 4 3 8 8 C 1.50701 * 125.90021 * 179.74332 * 7 6 4 9 9 N 1.46902 * 109.47153 * 270.04089 * 8 7 6 10 10 C 1.47447 * 111.00023 * 69.87255 * 9 8 7 11 11 C 1.54313 * 107.23600 * 123.25654 * 10 9 8 12 12 C 1.55146 * 103.01648 * 22.28431 * 11 10 9 13 13 C 1.47845 * 111.00043 * 190.71218 * 9 8 7 14 14 H 1.08994 * 110.37735 * 332.47037 * 13 9 8 15 15 C 1.50701 * 110.36805 * 94.80925 * 13 9 8 16 16 H 1.08000 * 120.00387 * 0.02562 * 15 13 9 17 17 C 1.37875 * 119.99730 * 179.97438 * 15 13 9 18 18 N 1.31520 * 120.00056 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 120.00346 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46691 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47490 * 119.99884 * 19 17 15 22 22 H 1.48504 * 109.47208 * 240.00309 * 19 17 15 23 23 H 1.09001 * 109.47308 * 90.02273 * 1 2 3 24 24 H 1.08996 * 109.47443 * 210.02543 * 1 2 3 25 25 H 1.09005 * 109.46710 * 330.02755 * 1 2 3 26 26 H 1.08002 * 126.12447 * 359.93623 * 3 2 1 27 27 H 1.08994 * 109.47093 * 30.04116 * 8 7 6 28 28 H 1.09000 * 109.47465 * 150.04521 * 8 7 6 29 29 H 1.09001 * 109.89162 * 242.66733 * 10 9 8 30 30 H 1.09003 * 109.88792 * 3.84862 * 10 9 8 31 31 H 1.08996 * 110.70604 * 140.66611 * 11 10 9 32 32 H 1.09002 * 110.70669 * 263.73356 * 11 10 9 33 33 H 1.09001 * 110.98898 * 82.44012 * 12 11 10 34 34 H 1.08996 * 110.98751 * 206.25239 * 12 11 10 35 35 H 0.97005 * 119.99883 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0942 0.0000 4 7 3.5844 0.6705 -0.0047 5 1 4.3724 1.2361 -0.0089 6 7 3.5754 -0.7303 0.0008 7 6 2.3299 -1.1310 0.0005 8 6 1.8626 -2.5638 0.0000 9 7 1.7119 -3.0291 -1.3852 10 6 3.0250 -3.1727 -2.0402 11 6 3.1316 -4.6301 -2.5362 12 6 1.6485 -5.0739 -2.6381 13 6 1.0167 -4.3331 -1.4333 14 1 1.1898 -4.8897 -0.5124 15 6 -0.4601 -4.1323 -1.6567 16 1 -0.8604 -3.1342 -1.7561 17 6 -1.2999 -5.2229 -1.7352 18 7 -0.8122 -6.4384 -1.6156 19 14 -3.1304 -4.9742 -2.0128 20 1 -3.4228 -3.5218 -2.1138 21 1 -3.5366 -5.6501 -3.2710 22 1 -3.8870 -5.5528 -0.8734 23 1 -0.3634 -0.0004 -1.0277 24 1 -0.3634 -0.8897 0.5142 25 1 -0.3633 0.8903 0.5134 26 1 1.9724 2.1223 -0.0010 27 1 2.5956 -3.1852 0.5143 28 1 0.9034 -2.6333 0.5130 29 1 3.0949 -2.4875 -2.8850 30 1 3.8209 -2.9653 -1.3249 31 1 3.6140 -4.6705 -3.5128 32 1 3.6717 -5.2440 -1.8154 33 1 1.2052 -4.7419 -3.5769 34 1 1.5556 -6.1540 -2.5247 35 1 -1.4032 -7.2057 -1.6705 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259963957.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:10 Heat of formation + Delta-G solvation = 73.144074 kcal Electronic energy + Delta-G solvation = -16865.323150 eV Core-core repulsion = 14285.615276 eV Total energy + Delta-G solvation = -2579.707874 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.89697 -37.78448 -33.09399 -32.38477 -31.48275 -29.86849 -28.09364 -26.03482 -25.29293 -24.07390 -20.64435 -20.18449 -19.51001 -18.55003 -17.42249 -16.34867 -15.29748 -14.53567 -14.39392 -13.94254 -13.90412 -13.11111 -12.67240 -12.36157 -12.31613 -12.14562 -11.99259 -11.52518 -11.43682 -10.97240 -10.66226 -10.59807 -10.45630 -10.09924 -10.01237 -9.70252 -9.59725 -9.08068 -8.90473 -8.34924 -8.07473 -7.14964 -5.94979 -3.95298 2.16866 3.09320 3.16127 3.35212 3.43215 3.48438 4.48515 5.01680 5.06220 5.33430 5.36593 5.59399 5.65181 5.78586 5.86704 6.00106 6.16668 6.18593 6.32017 6.37709 6.46317 6.49905 6.64014 6.67536 6.71879 7.03867 7.11144 7.16455 7.51650 7.54885 7.60433 7.94630 8.02846 8.20153 8.30913 8.60679 9.12064 9.68491 11.14507 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.026225 B = 0.008144 C = 0.006514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.427594 B = 3437.438714 C = 4297.684546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.214 4.214 3 C 0.038 3.962 4 N -0.488 5.488 5 H 0.433 0.567 6 N -0.299 5.299 7 C 0.105 3.895 8 C 0.133 3.867 9 N -0.516 5.516 10 C 0.048 3.952 11 C -0.151 4.151 12 C -0.102 4.102 13 C 0.209 3.791 14 H 0.015 0.985 15 C -0.490 4.490 16 H 0.066 0.934 17 C 0.057 3.943 18 N -0.897 5.897 19 Si 0.894 3.106 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.286 1.286 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.169 0.831 27 H 0.036 0.964 28 H 0.094 0.906 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.711 11.515 2.774 13.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.225 4.225 3 C -0.108 4.108 4 N -0.195 5.195 5 H 0.276 0.724 6 N -0.122 5.122 7 C -0.062 4.062 8 C 0.003 3.997 9 N -0.242 5.242 10 C -0.081 4.081 11 C -0.190 4.190 12 C -0.141 4.141 13 C 0.104 3.896 14 H 0.033 0.967 15 C -0.529 4.529 16 H 0.084 0.916 17 C -0.144 4.144 18 N -0.537 5.537 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.212 1.212 22 H -0.213 1.213 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.069 0.931 26 H 0.186 0.814 27 H 0.054 0.946 28 H 0.113 0.887 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.549 11.345 2.526 13.341 hybrid contribution -0.810 0.139 0.193 0.845 sum 5.739 11.484 2.719 13.123 Atomic orbital electron populations 1.20048 0.89181 1.01565 1.02181 1.20089 0.97436 0.91188 1.13803 1.22236 0.84835 0.99578 1.04147 1.46113 1.06772 1.05802 1.60861 0.72408 1.77257 1.20972 0.88378 1.25639 1.22399 0.89662 0.97129 0.97053 1.20502 1.00164 0.86579 0.92444 1.63592 1.15927 1.32091 1.12564 1.22696 0.91306 0.95802 0.98277 1.22887 0.99878 0.96575 0.99628 1.22616 0.90444 1.00965 1.00116 1.20149 0.93403 0.82316 0.93747 0.96749 1.21110 0.90834 0.93050 1.47920 0.91611 1.24955 0.98640 0.95188 0.95612 1.69976 1.34945 0.97685 1.51055 0.86500 0.85443 0.78286 0.77551 1.19624 1.21248 1.21263 0.91574 0.91280 0.93076 0.81373 0.94632 0.88740 0.92576 0.93699 0.92801 0.92958 0.92523 0.90931 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.06 10.18 36.01 0.37 -0.69 16 2 C -0.21 -3.42 6.10 -105.05 -0.64 -4.06 16 3 C 0.04 0.49 11.90 -17.23 -0.21 0.28 16 4 N -0.49 -6.45 7.36 30.44 0.22 -6.22 16 5 H 0.43 4.02 8.96 -182.60 -1.64 2.38 16 6 N -0.30 -5.21 12.23 33.67 0.41 -4.79 16 7 C 0.11 1.93 6.16 -82.40 -0.51 1.42 16 8 C 0.13 2.69 4.92 -4.97 -0.02 2.66 16 9 N -0.52 -11.50 4.79 -226.19 -1.08 -12.58 16 10 C 0.05 0.97 6.41 -2.84 -0.02 0.95 16 11 C -0.15 -3.04 6.94 -24.91 -0.17 -3.21 16 12 C -0.10 -2.45 5.86 -24.59 -0.14 -2.60 16 13 C 0.21 5.28 2.28 -67.34 -0.15 5.12 16 14 H 0.01 0.40 7.81 -51.93 -0.41 0.00 16 15 C -0.49 -13.37 8.82 -34.44 -0.30 -13.68 16 16 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 17 C 0.06 1.56 5.34 -17.82 -0.10 1.47 16 18 N -0.90 -25.57 12.27 55.43 0.68 -24.89 16 19 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 23 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.07 1.09 7.26 -51.93 -0.38 0.71 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.17 1.45 8.06 -52.49 -0.42 1.02 16 27 H 0.04 0.71 7.96 -51.93 -0.41 0.30 16 28 H 0.09 1.92 7.18 -51.93 -0.37 1.55 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.04 0.89 6.91 -51.93 -0.36 0.53 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.41 8.05 -51.93 -0.42 0.99 16 34 H 0.07 1.84 7.57 -51.93 -0.39 1.45 16 35 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 289.02 15.07 4.36 4.36 Total: -1.00 -30.50 289.02 -8.79 -39.28 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -6.46 Total: 0.93 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -1.90 Total: -12.33 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.23 Total: -48.49 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.50 -8.79 -39.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259963957.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.429 kcal (2) G-P(sol) polarization free energy of solvation -30.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds