Wall clock time and date at job start Mon Mar 30 2020 03:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35317 * 126.04137 * 2 1 4 4 N 1.34940 * 107.74438 * 180.20917 * 3 2 1 5 5 H 0.97004 * 126.03820 * 179.77261 * 4 3 2 6 6 N 1.40088 * 107.93023 * 359.63568 * 4 3 2 7 7 C 1.30838 * 108.20068 * 0.36844 * 6 4 3 8 8 C 1.50701 * 125.90021 * 179.74332 * 7 6 4 9 9 N 1.46902 * 109.47153 * 270.04089 * 8 7 6 10 10 C 1.47447 * 111.00023 * 69.87255 * 9 8 7 11 11 C 1.54313 * 107.23600 * 123.25654 * 10 9 8 12 12 C 1.55146 * 103.01648 * 22.28431 * 11 10 9 13 13 C 1.47845 * 111.00043 * 190.71218 * 9 8 7 14 14 H 1.08994 * 110.37735 * 332.47037 * 13 9 8 15 15 C 1.50701 * 110.36805 * 94.80925 * 13 9 8 16 16 H 1.08000 * 120.00387 * 0.02562 * 15 13 9 17 17 C 1.37875 * 119.99730 * 179.97438 * 15 13 9 18 18 N 1.31520 * 120.00056 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 120.00346 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46691 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47490 * 119.99884 * 19 17 15 22 22 H 1.48504 * 109.47208 * 240.00309 * 19 17 15 23 23 H 1.09001 * 109.47308 * 90.02273 * 1 2 3 24 24 H 1.08996 * 109.47443 * 210.02543 * 1 2 3 25 25 H 1.09005 * 109.46710 * 330.02755 * 1 2 3 26 26 H 1.08002 * 126.12447 * 359.93623 * 3 2 1 27 27 H 1.08994 * 109.47093 * 30.04116 * 8 7 6 28 28 H 1.09000 * 109.47465 * 150.04521 * 8 7 6 29 29 H 1.09001 * 109.89162 * 242.66733 * 10 9 8 30 30 H 1.09003 * 109.88792 * 3.84862 * 10 9 8 31 31 H 1.08996 * 110.70604 * 140.66611 * 11 10 9 32 32 H 1.09002 * 110.70669 * 263.73356 * 11 10 9 33 33 H 1.09001 * 110.98898 * 82.44012 * 12 11 10 34 34 H 1.08996 * 110.98751 * 206.25239 * 12 11 10 35 35 H 0.97005 * 119.99883 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0942 0.0000 4 7 3.5844 0.6705 -0.0047 5 1 4.3724 1.2361 -0.0089 6 7 3.5754 -0.7303 0.0008 7 6 2.3299 -1.1310 0.0005 8 6 1.8626 -2.5638 0.0000 9 7 1.7119 -3.0291 -1.3852 10 6 3.0250 -3.1727 -2.0402 11 6 3.1316 -4.6301 -2.5362 12 6 1.6485 -5.0739 -2.6381 13 6 1.0167 -4.3331 -1.4333 14 1 1.1898 -4.8897 -0.5124 15 6 -0.4601 -4.1323 -1.6567 16 1 -0.8604 -3.1342 -1.7561 17 6 -1.2999 -5.2229 -1.7352 18 7 -0.8122 -6.4384 -1.6156 19 14 -3.1304 -4.9742 -2.0128 20 1 -3.4228 -3.5218 -2.1138 21 1 -3.5366 -5.6501 -3.2710 22 1 -3.8870 -5.5528 -0.8734 23 1 -0.3634 -0.0004 -1.0277 24 1 -0.3634 -0.8897 0.5142 25 1 -0.3633 0.8903 0.5134 26 1 1.9724 2.1223 -0.0010 27 1 2.5956 -3.1852 0.5143 28 1 0.9034 -2.6333 0.5130 29 1 3.0949 -2.4875 -2.8850 30 1 3.8209 -2.9653 -1.3249 31 1 3.6140 -4.6705 -3.5128 32 1 3.6717 -5.2440 -1.8154 33 1 1.2052 -4.7419 -3.5769 34 1 1.5556 -6.1540 -2.5247 35 1 -1.4032 -7.2057 -1.6705 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259963957.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:10 Heat of formation + Delta-G solvation = 52.432614 kcal Electronic energy + Delta-G solvation = -16866.221266 eV Core-core repulsion = 14285.615276 eV Total energy + Delta-G solvation = -2580.605990 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.09406 -39.55943 -34.85337 -34.08077 -32.77407 -31.35538 -30.03586 -27.23355 -26.88574 -26.04371 -22.00480 -21.71800 -21.36122 -19.95004 -18.52021 -18.41702 -17.02842 -16.40217 -16.02606 -15.39086 -15.27827 -14.68705 -14.26212 -13.81772 -13.76252 -13.65326 -13.48370 -13.26403 -12.92425 -12.71912 -12.55361 -12.37578 -12.15184 -11.84974 -11.64615 -11.46840 -11.34122 -10.94357 -10.45902 -10.31470 -9.23549 -8.95834 -8.06307 -6.14097 1.02620 1.45429 1.47270 1.59836 1.81619 2.12669 2.48628 3.23550 3.52423 3.83889 3.92376 4.06978 4.19133 4.40180 4.42303 4.53603 4.67591 4.77723 4.80978 4.86877 4.99125 5.05123 5.07365 5.16590 5.24824 5.34917 5.45005 5.55582 5.64745 5.79442 5.82199 6.23606 6.48103 6.58128 6.63636 6.83901 6.97326 7.53580 9.02307 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.026225 B = 0.008144 C = 0.006514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.427594 B = 3437.438714 C = 4297.684546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.249 4.249 3 C 0.071 3.929 4 N -0.469 5.469 5 H 0.452 0.548 6 N -0.327 5.327 7 C 0.082 3.918 8 C 0.140 3.860 9 N -0.523 5.523 10 C 0.053 3.947 11 C -0.139 4.139 12 C -0.098 4.098 13 C 0.211 3.789 14 H -0.018 1.018 15 C -0.504 4.504 16 H 0.057 0.943 17 C 0.011 3.989 18 N -0.926 5.926 19 Si 0.958 3.042 20 H -0.265 1.265 21 H -0.283 1.283 22 H -0.281 1.281 23 H 0.051 0.949 24 H 0.045 0.955 25 H 0.084 0.916 26 H 0.221 0.779 27 H 0.028 0.972 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.043 0.957 34 H 0.051 0.949 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.051 13.962 2.546 15.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.260 4.260 3 C -0.077 4.077 4 N -0.179 5.179 5 H 0.299 0.701 6 N -0.152 5.152 7 C -0.084 4.084 8 C 0.009 3.991 9 N -0.249 5.249 10 C -0.075 4.075 11 C -0.177 4.177 12 C -0.138 4.138 13 C 0.105 3.895 14 H 0.000 1.000 15 C -0.543 4.543 16 H 0.075 0.925 17 C -0.188 4.188 18 N -0.566 5.566 19 Si 0.784 3.216 20 H -0.189 1.189 21 H -0.209 1.209 22 H -0.207 1.207 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.103 0.897 26 H 0.237 0.763 27 H 0.046 0.954 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.922 13.807 2.301 15.615 hybrid contribution -0.848 -0.534 0.305 1.047 sum 6.074 13.274 2.605 14.828 Atomic orbital electron populations 1.19981 0.88912 1.02124 1.01366 1.20333 0.98093 0.91545 1.16048 1.22889 0.83662 1.00887 1.00231 1.46156 1.08122 1.04617 1.59019 0.70101 1.77150 1.20553 0.90798 1.26696 1.22090 0.90806 0.96438 0.99099 1.20310 0.99320 0.88418 0.91004 1.63507 1.17052 1.30158 1.14137 1.22671 0.90537 0.95958 0.98326 1.22818 0.97298 0.96185 1.01411 1.22416 0.93224 0.99382 0.98734 1.19958 0.93234 0.83633 0.92700 0.99998 1.21322 0.92238 0.92732 1.47982 0.92470 1.25704 1.02894 0.94859 0.95309 1.70093 1.36397 0.98345 1.51743 0.85503 0.80224 0.78443 0.77470 1.18937 1.20867 1.20734 0.93034 0.93561 0.89704 0.76271 0.95419 0.90221 0.92159 0.92979 0.90060 0.92199 0.93862 0.93052 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.89 10.18 71.24 0.73 -1.16 16 2 C -0.25 -7.55 6.10 -20.14 -0.12 -7.67 16 3 C 0.07 1.53 11.90 83.54 0.99 2.53 16 4 N -0.47 -10.84 7.36 -57.59 -0.42 -11.27 16 5 H 0.45 6.63 8.96 -213.32 -1.91 4.72 16 6 N -0.33 -10.91 12.23 -47.38 -0.58 -11.49 16 7 C 0.08 2.96 6.16 43.10 0.27 3.22 16 8 C 0.14 5.81 4.92 85.56 0.42 6.23 16 9 N -0.52 -23.82 4.79 -869.52 -4.16 -27.98 16 10 C 0.05 2.15 6.41 86.64 0.56 2.70 16 11 C -0.14 -5.50 6.94 31.78 0.22 -5.28 16 12 C -0.10 -4.82 5.86 31.98 0.19 -4.64 16 13 C 0.21 11.04 2.28 44.64 0.10 11.15 16 14 H -0.02 -1.02 7.81 -2.39 -0.02 -1.04 16 15 C -0.50 -28.33 8.82 25.60 0.23 -28.10 16 16 H 0.06 3.24 7.81 -2.91 -0.02 3.22 16 17 C 0.01 0.59 5.34 84.65 0.45 1.04 16 18 N -0.93 -54.09 12.27 21.45 0.26 -53.82 16 19 Si 0.96 44.19 29.54 68.60 2.03 46.21 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 23 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.05 1.49 7.26 -2.39 -0.02 1.48 16 25 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 26 H 0.22 2.40 8.06 -2.91 -0.02 2.37 16 27 H 0.03 1.16 7.96 -2.39 -0.02 1.14 16 28 H 0.08 3.46 7.18 -2.39 -0.02 3.44 16 29 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.05 2.03 6.91 -2.39 -0.02 2.01 16 31 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.06 2.27 8.14 -2.39 -0.02 2.26 16 33 H 0.04 2.19 8.05 -2.39 -0.02 2.17 16 34 H 0.05 2.70 7.57 -2.39 -0.02 2.68 16 35 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 Total: -1.00 -67.35 289.02 0.32 -67.03 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -0.83 Total: 11.29 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: 4.03 Total: -19.97 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -4.90 Total: -104.56 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -67.35 0.32 -67.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259963957.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.460 kcal (2) G-P(sol) polarization free energy of solvation -67.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds