Wall clock time and date at job start Mon Mar 30 2020 03:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 N 1.30837 * 126.46121 * 269.68814 * 3 2 1 5 5 N 1.28909 * 109.73647 * 179.79170 * 4 3 2 6 6 C 1.29837 * 109.47999 * 0.42019 * 5 4 3 7 7 N 1.34695 * 126.46760 * 89.99648 * 3 2 1 8 8 C 1.46253 * 128.84221 * 0.13225 * 7 3 2 9 9 C 1.53321 * 108.72714 * 162.90511 * 8 7 3 10 10 C 1.53140 * 109.57952 * 50.29017 * 9 8 7 11 11 H 1.08997 * 109.49998 * 50.51358 * 10 9 8 12 12 C 1.53000 * 109.49844 * 170.58289 * 10 9 8 13 13 C 1.50694 * 109.47397 * 184.99789 * 12 10 9 14 14 H 1.08007 * 120.00133 * 359.97438 * 13 12 10 15 15 C 1.37876 * 120.00389 * 180.02562 * 13 12 10 16 16 N 1.31512 * 119.99742 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00381 * 179.97438 * 15 13 12 18 18 H 1.48509 * 109.46854 * 60.00154 * 17 15 13 19 19 H 1.48495 * 109.47280 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47372 * 300.00300 * 17 15 13 21 21 C 1.50804 * 128.52217 * 179.86135 * 6 5 4 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 26 26 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 27 27 H 1.08995 * 109.59683 * 282.67520 * 8 7 3 28 28 H 1.09000 * 109.59957 * 42.98393 * 8 7 3 29 29 H 1.09003 * 109.45340 * 170.32627 * 9 8 7 30 30 H 1.08998 * 109.45118 * 290.25549 * 9 8 7 31 31 H 1.08998 * 109.47544 * 305.00377 * 12 10 9 32 32 H 1.09001 * 109.47132 * 64.99590 * 12 10 9 33 33 H 0.97008 * 120.00031 * 179.97438 * 16 15 13 34 34 H 1.09002 * 109.73085 * 44.41728 * 21 6 5 35 35 H 1.08999 * 109.73276 * 283.72978 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2969 2.1520 -1.0523 5 7 2.7024 3.3181 -0.6813 6 6 2.7222 3.3773 0.6155 7 7 2.2992 2.1757 1.0832 8 6 2.1779 1.8252 2.4979 9 6 2.9854 2.8320 3.3255 10 6 2.6048 4.2571 2.9138 11 1 1.5201 4.3628 2.9290 12 6 3.2290 5.2550 3.8913 13 6 2.7553 6.6466 3.5595 14 1 2.0771 6.8037 2.7337 15 6 3.1883 7.7194 4.3094 16 7 4.0153 7.5284 5.3141 17 14 2.6017 9.4444 3.8977 18 1 1.1219 9.5035 4.0082 19 1 3.2074 10.4129 4.8466 20 1 3.0087 9.7881 2.5116 21 6 3.1265 4.5322 1.4969 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.1302 1.8642 2.7957 28 1 2.5669 0.8199 2.6602 29 1 2.7676 2.6895 4.3840 30 1 4.0497 2.6754 3.1500 31 1 2.9304 5.0024 4.9086 32 1 4.3152 5.2120 3.8103 33 1 4.3203 8.2832 5.8415 34 1 2.6897 5.4557 1.1169 35 1 4.2130 4.6186 1.5151 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260000436.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:54 Heat of formation + Delta-G solvation = 46.999738 kcal Electronic energy + Delta-G solvation = -16617.703379 eV Core-core repulsion = 14036.861801 eV Total energy + Delta-G solvation = -2580.841577 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.00437 -37.34221 -34.83122 -33.57847 -32.13504 -30.43412 -29.14216 -26.92209 -24.56841 -24.05651 -22.89450 -20.72223 -20.55529 -18.97828 -16.77188 -16.24831 -16.19587 -14.83235 -14.59093 -14.50402 -14.26700 -13.93080 -13.32419 -13.12532 -12.75975 -12.14914 -11.97729 -11.85438 -11.47965 -11.41181 -11.33285 -11.01494 -10.82403 -10.64954 -10.51527 -10.22136 -9.86531 -9.83320 -9.40477 -9.13415 -8.63990 -8.42792 -6.07654 -4.10534 2.09921 2.73679 3.16444 3.31133 3.35714 3.38866 4.29844 4.40540 4.60648 4.73715 4.80688 4.87072 5.05728 5.10950 5.25194 5.29011 5.33687 5.55673 5.58720 5.67842 5.80920 5.93996 5.97871 6.09276 6.20862 6.26099 6.46484 6.66310 6.69086 6.80302 7.18144 7.51626 7.62406 7.89566 8.30098 8.94936 9.05895 9.54781 11.03317 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.042451 B = 0.005702 C = 0.005378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.420496 B = 4909.171309 C = 5205.053361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.031 4.031 3 C 0.161 3.839 4 N -0.304 5.304 5 N -0.305 5.305 6 C 0.195 3.805 7 N -0.468 5.468 8 C 0.105 3.895 9 C -0.133 4.133 10 C -0.085 4.085 11 H 0.065 0.935 12 C 0.031 3.969 13 C -0.523 4.523 14 H 0.057 0.943 15 C 0.060 3.940 16 N -0.895 5.895 17 Si 0.890 3.110 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.022 4.022 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.053 0.947 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.021 0.979 32 H 0.021 0.979 33 H 0.262 0.738 34 H 0.103 0.897 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.517 -14.625 -3.869 15.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.071 4.071 3 C -0.106 4.106 4 N -0.145 5.145 5 N -0.144 5.144 6 C -0.073 4.073 7 N -0.159 5.159 8 C -0.018 4.018 9 C -0.170 4.170 10 C -0.104 4.104 11 H 0.084 0.916 12 C -0.006 4.006 13 C -0.561 4.561 14 H 0.075 0.925 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.061 4.061 22 H 0.085 0.915 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.096 0.904 26 H 0.114 0.886 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.071 0.929 34 H 0.121 0.879 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.265 -14.135 -5.170 15.643 hybrid contribution -0.416 0.606 1.236 1.438 sum -4.681 -13.529 -3.934 14.846 Atomic orbital electron populations 1.21737 0.93817 1.02222 1.02729 1.19892 0.96455 0.86706 1.04019 1.24500 1.04949 0.97749 0.83425 1.74380 1.17000 0.99039 1.24051 1.74046 1.19183 1.12566 1.08593 1.25332 1.00530 0.89045 0.92351 1.46026 1.49134 1.12276 1.08442 1.22088 1.02517 1.00401 0.76786 1.22094 0.99915 0.95145 0.99877 1.21415 1.00671 0.93550 0.94768 0.91632 1.19119 0.96059 0.92279 0.93119 1.21165 1.28208 0.91721 1.15038 0.92503 1.24986 0.94979 0.99197 0.94982 1.69939 1.32901 1.31360 1.19157 0.86679 0.79008 0.84146 0.78361 1.20265 1.21308 1.20045 1.20380 1.02193 0.91869 0.91662 0.91499 0.91793 0.92744 0.90371 0.88638 0.89639 0.89485 0.89165 0.91059 0.96056 0.96101 0.92863 0.87872 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.89 37.16 0.37 -0.93 16 2 C -0.03 -0.31 6.34 -27.88 -0.18 -0.49 16 3 C 0.16 2.45 7.32 -155.45 -1.14 1.31 16 4 N -0.30 -5.74 12.23 32.70 0.40 -5.34 16 5 N -0.30 -6.22 12.21 32.76 0.40 -5.82 16 6 C 0.19 3.59 7.75 -155.31 -1.20 2.38 16 7 N -0.47 -7.21 3.11 -110.86 -0.35 -7.55 16 8 C 0.10 1.25 6.75 -4.01 -0.03 1.22 16 9 C -0.13 -1.87 5.24 -26.49 -0.14 -2.01 16 10 C -0.08 -1.54 2.16 -90.31 -0.19 -1.74 16 11 H 0.07 1.22 8.12 -51.93 -0.42 0.80 16 12 C 0.03 0.72 4.43 -27.89 -0.12 0.60 16 13 C -0.52 -13.74 8.55 -34.44 -0.29 -14.03 16 14 H 0.06 1.46 7.13 -52.48 -0.37 1.09 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 17 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 C -0.02 -0.40 5.25 -27.59 -0.14 -0.55 16 22 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.61 7.75 -51.93 -0.40 0.21 16 26 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.09 0.79 7.84 -51.93 -0.41 0.39 16 29 H 0.09 1.17 8.10 -51.93 -0.42 0.74 16 30 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 31 H 0.02 0.52 8.12 -51.93 -0.42 0.10 16 32 H 0.02 0.51 8.12 -51.93 -0.42 0.09 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.10 2.03 7.38 -51.93 -0.38 1.65 16 35 H 0.09 1.69 8.09 -51.93 -0.42 1.27 16 LS Contribution 288.63 15.07 4.35 4.35 Total: -1.00 -31.40 288.63 -7.99 -39.40 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -5.34 Total: -3.44 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -3.17 Total: -12.68 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 1.19 Total: -43.65 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.40 -7.99 -39.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260000436.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.396 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds