Wall clock time and date at job start Mon Mar 30 2020 03:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 N 1.30837 * 126.46121 * 269.68814 * 3 2 1 5 5 N 1.28909 * 109.73647 * 179.79170 * 4 3 2 6 6 C 1.29837 * 109.47999 * 0.42019 * 5 4 3 7 7 N 1.34695 * 126.46760 * 89.99648 * 3 2 1 8 8 C 1.46253 * 128.84221 * 0.13225 * 7 3 2 9 9 C 1.53321 * 108.72714 * 162.90511 * 8 7 3 10 10 C 1.53140 * 109.57952 * 50.29017 * 9 8 7 11 11 H 1.08997 * 109.49998 * 50.51358 * 10 9 8 12 12 C 1.53000 * 109.49844 * 170.58289 * 10 9 8 13 13 C 1.50694 * 109.47397 * 184.99789 * 12 10 9 14 14 H 1.08007 * 120.00133 * 359.97438 * 13 12 10 15 15 C 1.37876 * 120.00389 * 180.02562 * 13 12 10 16 16 N 1.31512 * 119.99742 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00381 * 179.97438 * 15 13 12 18 18 H 1.48509 * 109.46854 * 60.00154 * 17 15 13 19 19 H 1.48495 * 109.47280 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47372 * 300.00300 * 17 15 13 21 21 C 1.50804 * 128.52217 * 179.86135 * 6 5 4 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 26 26 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 27 27 H 1.08995 * 109.59683 * 282.67520 * 8 7 3 28 28 H 1.09000 * 109.59957 * 42.98393 * 8 7 3 29 29 H 1.09003 * 109.45340 * 170.32627 * 9 8 7 30 30 H 1.08998 * 109.45118 * 290.25549 * 9 8 7 31 31 H 1.08998 * 109.47544 * 305.00377 * 12 10 9 32 32 H 1.09001 * 109.47132 * 64.99590 * 12 10 9 33 33 H 0.97008 * 120.00031 * 179.97438 * 16 15 13 34 34 H 1.09002 * 109.73085 * 44.41728 * 21 6 5 35 35 H 1.08999 * 109.73276 * 283.72978 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2969 2.1520 -1.0523 5 7 2.7024 3.3181 -0.6813 6 6 2.7222 3.3773 0.6155 7 7 2.2992 2.1757 1.0832 8 6 2.1779 1.8252 2.4979 9 6 2.9854 2.8320 3.3255 10 6 2.6048 4.2571 2.9138 11 1 1.5201 4.3628 2.9290 12 6 3.2290 5.2550 3.8913 13 6 2.7553 6.6466 3.5595 14 1 2.0771 6.8037 2.7337 15 6 3.1883 7.7194 4.3094 16 7 4.0153 7.5284 5.3141 17 14 2.6017 9.4444 3.8977 18 1 1.1219 9.5035 4.0082 19 1 3.2074 10.4129 4.8466 20 1 3.0087 9.7881 2.5116 21 6 3.1265 4.5322 1.4969 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.1302 1.8642 2.7957 28 1 2.5669 0.8199 2.6602 29 1 2.7676 2.6895 4.3840 30 1 4.0497 2.6754 3.1500 31 1 2.9304 5.0024 4.9086 32 1 4.3152 5.2120 3.8103 33 1 4.3203 8.2832 5.8415 34 1 2.6897 5.4557 1.1169 35 1 4.2130 4.6186 1.5151 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260000436.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:53 Heat of formation + Delta-G solvation = 29.284777 kcal Electronic energy + Delta-G solvation = -16618.471557 eV Core-core repulsion = 14036.861801 eV Total energy + Delta-G solvation = -2581.609756 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.29112 -38.72316 -36.03285 -35.07515 -33.72761 -31.68796 -30.55254 -28.54681 -26.06967 -25.03252 -24.39142 -22.17057 -21.75972 -20.33955 -18.52154 -17.64433 -17.45774 -16.55250 -15.94641 -15.73761 -15.27213 -15.18946 -14.57132 -14.52796 -13.88686 -13.73721 -13.24877 -13.18171 -13.01480 -12.76459 -12.54515 -12.40975 -12.31760 -12.11961 -12.06057 -11.74193 -11.32305 -11.16924 -11.03763 -10.92930 -10.52253 -9.99378 -8.17674 -6.25855 0.86410 1.41926 1.43213 1.50548 1.59092 1.81332 2.42580 3.15396 3.22979 3.49088 3.58134 3.77624 3.79262 4.07594 4.28347 4.30716 4.37226 4.43855 4.56945 4.62544 4.80701 4.84684 4.95471 4.99318 5.08716 5.11863 5.19316 5.21433 5.26932 5.34012 5.51835 5.71758 5.86095 6.01643 6.27149 6.89299 7.42957 7.73483 8.93288 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.042451 B = 0.005702 C = 0.005378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.420496 B = 4909.171309 C = 5205.053361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.031 4.031 3 C 0.181 3.819 4 N -0.348 5.348 5 N -0.343 5.343 6 C 0.181 3.819 7 N -0.465 5.465 8 C 0.104 3.896 9 C -0.127 4.127 10 C -0.074 4.074 11 H 0.062 0.938 12 C 0.037 3.963 13 C -0.535 4.535 14 H 0.057 0.943 15 C 0.008 3.992 16 N -0.929 5.929 17 Si 0.950 3.050 18 H -0.270 1.270 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.014 4.014 22 H 0.097 0.903 23 H 0.043 0.957 24 H 0.052 0.948 25 H 0.112 0.888 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.130 0.870 29 H 0.107 0.893 30 H 0.069 0.931 31 H 0.006 0.994 32 H -0.001 1.001 33 H 0.262 0.738 34 H 0.082 0.918 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.669 -16.807 -3.540 18.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.071 4.071 3 C -0.087 4.087 4 N -0.188 5.188 5 N -0.182 5.182 6 C -0.088 4.088 7 N -0.156 5.156 8 C -0.017 4.017 9 C -0.164 4.164 10 C -0.093 4.093 11 H 0.081 0.919 12 C 0.000 4.000 13 C -0.573 4.573 14 H 0.075 0.925 15 C -0.191 4.191 16 N -0.570 5.570 17 Si 0.776 3.224 18 H -0.195 1.195 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.053 4.053 22 H 0.116 0.884 23 H 0.062 0.938 24 H 0.071 0.929 25 H 0.131 0.869 26 H 0.123 0.877 27 H 0.125 0.875 28 H 0.148 0.852 29 H 0.126 0.874 30 H 0.087 0.913 31 H 0.024 0.976 32 H 0.017 0.983 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.429 -16.328 -4.841 17.875 hybrid contribution -0.068 1.226 1.133 1.671 sum -5.498 -15.102 -3.708 16.494 Atomic orbital electron populations 1.21722 0.92751 1.03924 1.01689 1.20241 0.97151 0.83464 1.06200 1.25469 1.01960 0.99000 0.82306 1.74296 1.19292 0.99218 1.26007 1.73935 1.20372 1.13994 1.09856 1.25047 1.01714 0.90076 0.91983 1.46234 1.48273 1.11130 1.09924 1.22392 1.03631 1.01495 0.74147 1.21994 1.00300 0.92768 1.01359 1.21181 0.99827 0.95183 0.93095 0.91938 1.18975 0.94834 0.92567 0.93599 1.21608 1.27683 0.93406 1.14584 0.92514 1.25772 0.95263 1.03013 0.95013 1.70049 1.34284 1.32352 1.20286 0.85725 0.78802 0.79800 0.78103 1.19460 1.20999 1.19727 1.20147 1.01525 0.91594 0.92078 0.88420 0.93807 0.92852 0.86942 0.87696 0.87540 0.85164 0.87438 0.91261 0.97580 0.98288 0.92889 0.89979 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.89 71.98 0.71 -1.29 16 2 C -0.03 -0.50 6.34 29.85 0.19 -0.31 16 3 C 0.18 5.08 7.32 138.14 1.01 6.09 16 4 N -0.35 -13.00 12.23 -50.46 -0.62 -13.62 16 5 N -0.34 -14.18 12.21 -50.28 -0.61 -14.80 16 6 C 0.18 6.64 7.75 138.14 1.07 7.71 16 7 N -0.47 -13.27 3.11 -504.66 -1.57 -14.84 16 8 C 0.10 2.06 6.75 86.53 0.58 2.65 16 9 C -0.13 -3.29 5.24 30.75 0.16 -3.13 16 10 C -0.07 -2.66 2.16 -10.59 -0.02 -2.68 16 11 H 0.06 2.29 8.12 -2.39 -0.02 2.27 16 12 C 0.04 1.76 4.43 29.85 0.13 1.89 16 13 C -0.53 -28.56 8.55 25.60 0.22 -28.35 16 14 H 0.06 2.96 7.13 -2.91 -0.02 2.94 16 15 C 0.01 0.42 5.46 84.65 0.46 0.88 16 16 N -0.93 -54.21 13.29 21.45 0.28 -53.93 16 17 Si 0.95 43.52 29.54 68.60 2.03 45.54 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 21 C -0.01 -0.52 5.25 30.04 0.16 -0.37 16 22 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 25 H 0.11 1.09 7.75 -2.39 -0.02 1.07 16 26 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.13 1.58 7.84 -2.39 -0.02 1.56 16 29 H 0.11 2.47 8.10 -2.39 -0.02 2.45 16 30 H 0.07 1.85 8.12 -2.39 -0.02 1.83 16 31 H 0.01 0.29 8.12 -2.39 -0.02 0.27 16 32 H 0.00 -0.06 8.12 -2.39 -0.02 -0.08 16 33 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 34 H 0.08 3.39 7.38 -2.39 -0.02 3.37 16 35 H 0.08 3.23 8.09 -2.39 -0.02 3.21 16 Total: -1.00 -70.37 288.63 5.25 -65.12 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: 1.06 Total: 3.41 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 4.68 Total: -16.89 kcal Atomic # 7 Polarization: -94.66 SS G_CDS: -2.52 Total: -97.18 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -70.37 5.25 -65.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260000436.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.406 kcal (2) G-P(sol) polarization free energy of solvation -70.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds