Wall clock time and date at job start Mon Mar 30 2020 02:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32576 * 120.40256 * 2 1 4 4 C 1.31757 * 121.01462 * 179.97438 * 3 2 1 5 5 N 1.31770 * 121.83562 * 359.97438 * 4 3 2 6 6 C 1.32970 * 120.68220 * 0.02562 * 5 4 3 7 7 N 1.38539 * 120.52848 * 179.97438 * 6 5 4 8 8 C 1.46897 * 111.00011 * 309.98762 * 7 6 5 9 9 C 1.46897 * 111.00527 * 73.94798 * 7 6 5 10 10 H 1.09005 * 109.47197 * 54.99182 * 9 7 6 11 11 C 1.53003 * 109.46662 * 295.00054 * 9 7 6 12 12 C 1.50694 * 109.47401 * 174.99632 * 9 7 6 13 13 H 1.07999 * 120.00062 * 359.97438 * 12 9 7 14 14 C 1.37887 * 119.99823 * 179.97438 * 12 9 7 15 15 N 1.31511 * 119.99915 * 0.02562 * 14 12 9 16 16 Si 1.86798 * 119.99638 * 179.97438 * 14 12 9 17 17 H 1.48494 * 109.47365 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46785 * 120.00543 * 16 14 12 19 19 H 1.48497 * 109.47230 * 239.99982 * 16 14 12 20 20 C 1.38086 * 120.39953 * 179.97438 * 2 1 3 21 21 C 1.50697 * 120.82946 * 0.02562 * 20 2 1 22 22 H 1.09001 * 109.47178 * 90.00503 * 1 2 3 23 23 H 1.09001 * 109.47060 * 210.00153 * 1 2 3 24 24 H 1.08993 * 109.47416 * 330.00479 * 1 2 3 25 25 H 1.08005 * 119.07987 * 179.97438 * 4 3 2 26 26 H 1.09002 * 109.47070 * 50.27199 * 8 7 6 27 27 H 1.09003 * 109.47038 * 170.27488 * 8 7 6 28 28 H 1.09000 * 109.47528 * 290.27034 * 8 7 6 29 29 H 1.08997 * 109.47799 * 59.99767 * 11 9 7 30 30 H 1.08998 * 109.46958 * 180.02562 * 11 9 7 31 31 H 1.08998 * 109.46985 * 299.99522 * 11 9 7 32 32 H 0.96997 * 120.00067 * 179.97438 * 15 14 12 33 33 H 1.09006 * 109.47271 * 90.00118 * 21 20 2 34 34 H 1.09001 * 109.46593 * 209.99585 * 21 20 2 35 35 H 1.08995 * 109.47733 * 329.99928 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1779 1.1435 0.0000 4 6 3.4954 1.1575 0.0005 5 7 4.2024 0.0455 0.0015 6 6 3.6014 -1.1406 0.0016 7 7 4.3478 -2.3077 0.0021 8 6 5.3743 -2.2766 -1.0482 9 6 4.9505 -2.5467 1.3203 10 1 4.1706 -2.5464 2.0819 11 6 5.9625 -1.4407 1.6264 12 6 5.6502 -3.8813 1.3183 13 1 5.6471 -4.4913 0.4271 14 6 6.2943 -4.3238 2.4544 15 7 6.2976 -3.5812 3.5397 16 14 7.1610 -5.9785 2.4520 17 1 7.0110 -6.6140 1.1184 18 1 8.6031 -5.7823 2.7471 19 1 6.5584 -6.8544 3.4888 20 6 2.2057 -1.1910 0.0005 21 6 1.4804 -2.5120 0.0005 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5137 25 1 4.0102 2.1070 0.0001 26 1 5.9353 -1.3445 -0.9806 27 1 6.0531 -3.1195 -0.9180 28 1 4.8963 -2.3428 -2.0256 29 1 5.4565 -0.4753 1.6278 30 1 6.4100 -1.6182 2.6042 31 1 6.7424 -1.4409 0.8649 32 1 6.7504 -3.8925 4.3390 33 1 1.3059 -2.8307 -1.0272 34 1 2.0856 -3.2586 0.5147 35 1 0.5253 -2.4021 0.5140 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260015166.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:10 Heat of formation + Delta-G solvation = 42.448584 kcal Electronic energy + Delta-G solvation = -17091.378298 eV Core-core repulsion = 14510.339368 eV Total energy + Delta-G solvation = -2581.038930 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.23241 -39.00074 -35.56456 -35.13755 -33.37057 -30.70402 -29.93652 -28.29826 -27.26652 -26.67969 -23.77700 -23.26309 -21.36434 -18.87619 -18.36747 -17.57144 -17.04464 -16.15808 -15.86896 -15.29403 -15.22339 -14.81462 -14.34885 -14.07133 -13.91777 -13.58370 -13.49807 -13.11490 -13.09282 -12.79361 -12.70726 -12.61247 -12.53905 -12.09879 -12.03912 -11.73881 -11.12380 -11.02753 -10.55694 -10.09819 -10.00457 -9.32692 -8.14445 -6.27382 0.00120 0.11562 1.43011 1.44735 1.56855 2.40176 2.77235 2.90066 3.15541 3.21145 3.39715 3.92101 4.01396 4.19657 4.52998 4.55707 4.67984 4.68192 4.74475 4.77463 4.91204 4.98692 5.03392 5.09256 5.11052 5.15394 5.34309 5.42568 5.60237 5.65043 5.73975 5.97012 6.14955 6.25611 6.64269 6.82818 7.20144 7.41519 8.92207 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.036968 B = 0.007237 C = 0.006851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.236189 B = 3868.186911 C = 4085.900761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.162 3.838 3 N -0.540 5.540 4 C 0.283 3.717 5 N -0.566 5.566 6 C 0.330 3.670 7 N -0.489 5.489 8 C 0.042 3.958 9 C 0.231 3.769 10 H -0.001 1.001 11 C -0.149 4.149 12 C -0.516 4.516 13 H 0.067 0.933 14 C 0.012 3.988 15 N -0.922 5.922 16 Si 0.966 3.034 17 H -0.263 1.263 18 H -0.282 1.282 19 H -0.281 1.281 20 C -0.180 4.180 21 C -0.090 4.090 22 H 0.103 0.897 23 H 0.099 0.901 24 H 0.085 0.915 25 H 0.214 0.786 26 H 0.031 0.969 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.031 0.969 30 H 0.056 0.944 31 H 0.029 0.971 32 H 0.262 0.738 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.615 4.589 -7.600 13.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.017 3.983 3 N -0.256 5.256 4 C -0.007 4.007 5 N -0.284 5.284 6 C 0.094 3.906 7 N -0.212 5.212 8 C -0.105 4.105 9 C 0.126 3.874 10 H 0.017 0.983 11 C -0.208 4.208 12 C -0.555 4.555 13 H 0.085 0.915 14 C -0.187 4.187 15 N -0.561 5.561 16 Si 0.791 3.209 17 H -0.187 1.187 18 H -0.208 1.208 19 H -0.207 1.207 20 C -0.186 4.186 21 C -0.148 4.148 22 H 0.121 0.879 23 H 0.117 0.883 24 H 0.104 0.896 25 H 0.230 0.770 26 H 0.050 0.950 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.385 5.033 -7.525 13.040 hybrid contribution 1.162 -0.708 0.606 1.490 sum -8.223 4.324 -6.919 11.584 Atomic orbital electron populations 1.20904 0.84844 1.04988 1.04923 1.22142 0.99336 0.86747 0.90087 1.68293 1.10315 1.30556 1.16409 1.25191 0.87085 0.97020 0.91369 1.68685 1.43449 1.00137 1.16135 1.20671 0.92108 0.88276 0.89533 1.60373 1.26288 1.26684 1.07817 1.22202 0.94060 1.01436 0.92810 1.19023 0.91060 0.94526 0.82828 0.98281 1.22202 0.99845 0.97230 1.01563 1.21324 1.33038 1.02576 0.98513 0.91484 1.25746 0.96956 1.01006 0.94951 1.70048 1.44444 1.38797 1.02814 0.85377 0.77812 0.79253 0.78418 1.18675 1.20832 1.20660 1.21567 0.93351 0.99569 1.04120 1.20583 0.99532 0.91333 1.03340 0.87903 0.88283 0.89575 0.76958 0.94986 0.90657 0.91645 0.94971 0.92498 0.95159 0.92867 0.89593 0.92471 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.88 9.83 71.24 0.70 -1.18 16 2 C 0.16 4.79 6.81 42.41 0.29 5.08 16 3 N -0.54 -17.19 10.37 -188.35 -1.95 -19.14 16 4 C 0.28 9.40 12.28 180.90 2.22 11.62 16 5 N -0.57 -22.38 7.02 -197.61 -1.39 -23.77 16 6 C 0.33 13.42 5.20 133.18 0.69 14.12 16 7 N -0.49 -21.62 3.82 -706.26 -2.70 -24.33 16 8 C 0.04 1.71 8.56 127.69 1.09 2.80 16 9 C 0.23 12.00 2.32 44.17 0.10 12.10 16 10 H 0.00 -0.04 8.11 -2.38 -0.02 -0.06 16 11 C -0.15 -7.73 8.08 71.98 0.58 -7.15 16 12 C -0.52 -28.00 7.74 25.60 0.20 -27.80 16 13 H 0.07 3.56 6.87 -2.91 -0.02 3.54 16 14 C 0.01 0.67 5.30 84.66 0.45 1.12 16 15 N -0.92 -53.21 11.32 21.45 0.24 -52.96 16 16 Si 0.97 43.03 29.54 68.60 2.03 45.05 16 17 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 20 C -0.18 -6.13 5.93 -19.56 -0.12 -6.25 16 21 C -0.09 -2.56 9.45 71.23 0.67 -1.89 16 22 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.10 1.53 6.07 -2.39 -0.01 1.52 16 24 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.21 5.49 8.06 -2.91 -0.02 5.47 16 26 H 0.03 1.32 6.34 -2.39 -0.02 1.31 16 27 H 0.07 3.18 6.22 -2.39 -0.01 3.17 16 28 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.03 1.59 5.88 -2.39 -0.01 1.58 16 30 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 31 H 0.03 1.51 6.71 -2.39 -0.02 1.50 16 32 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 33 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 34 H 0.06 2.00 7.56 -2.39 -0.02 1.98 16 35 H 0.09 2.00 6.07 -2.39 -0.01 1.98 16 Total: -1.00 -64.40 279.73 4.20 -60.20 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 1.09 Total: 12.36 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 6.88 Total: 2.58 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -5.80 Total: -120.20 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -64.40 4.20 -60.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260015166.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.649 kcal (2) G-P(sol) polarization free energy of solvation -64.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds