Wall clock time and date at job start Mon Mar 30 2020 04:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47396 * 2 1 4 4 C 1.50702 * 109.47297 * 239.99881 * 2 1 3 5 5 H 1.07998 * 119.99762 * 245.46013 * 4 2 1 6 6 C 1.37877 * 119.99817 * 65.46284 * 4 2 1 7 7 N 1.31514 * 120.00371 * 9.56548 * 6 4 2 8 8 Si 1.86806 * 119.99894 * 189.57091 * 6 4 2 9 9 H 1.48497 * 109.47180 * 84.99197 * 8 6 4 10 10 H 1.48495 * 109.46787 * 204.99405 * 8 6 4 11 11 H 1.48502 * 109.46679 * 324.99044 * 8 6 4 12 12 C 1.50700 * 109.47174 * 119.99755 * 2 1 3 13 13 N 1.35271 * 126.19751 * 59.96005 * 12 2 1 14 14 H 0.96997 * 125.99255 * 0.02562 * 13 12 2 15 15 N 1.40392 * 108.00773 * 180.02562 * 13 12 2 16 16 C 1.29835 * 108.08869 * 359.95253 * 15 13 12 17 17 C 1.34366 * 126.19647 * 239.99835 * 12 2 1 18 18 C 1.50858 * 129.07282 * 0.10534 * 17 12 2 19 19 N 1.47330 * 108.03741 * 163.50216 * 18 17 12 20 20 C 1.46906 * 110.99885 * 176.44177 * 19 18 17 21 21 C 1.46847 * 111.71229 * 51.97112 * 19 18 17 22 22 C 1.51017 * 129.17938 * 180.21848 * 16 15 13 23 23 H 1.09002 * 109.47005 * 63.50117 * 1 2 3 24 24 H 1.08996 * 109.46953 * 183.49964 * 1 2 3 25 25 H 1.08994 * 109.47258 * 303.49957 * 1 2 3 26 26 H 0.96997 * 120.00191 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.75035 * 43.86448 * 18 17 12 28 28 H 1.08998 * 109.79136 * 283.16114 * 18 17 12 29 29 H 1.09000 * 109.46589 * 59.99800 * 20 19 18 30 30 H 1.08994 * 109.46965 * 179.97438 * 20 19 18 31 31 H 1.08996 * 109.47364 * 300.00244 * 20 19 18 32 32 H 1.09005 * 109.40271 * 47.09547 * 21 19 18 33 33 H 1.08996 * 109.40246 * 166.82841 * 21 19 18 34 34 H 1.09004 * 109.82410 * 283.44668 * 22 16 15 35 35 H 1.09002 * 109.81943 * 44.36413 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5786 -1.6371 -1.1337 6 6 1.7946 -0.1774 -2.4796 7 7 1.2995 1.0357 -2.5936 8 14 2.1758 -1.1782 -4.0102 9 1 1.0236 -2.0610 -4.3240 10 1 2.4226 -0.2616 -5.1521 11 1 3.3842 -2.0076 -3.7710 12 6 2.0323 -0.7104 1.2305 13 7 1.7834 -1.9964 1.5681 14 1 1.2489 -2.6261 1.0594 15 7 2.4344 -2.2598 2.7837 16 6 3.0469 -1.1772 3.1558 17 6 2.8080 -0.1808 2.1914 18 6 3.3662 1.2165 2.3003 19 7 3.8055 1.4251 3.6910 20 6 4.4396 2.7406 3.8512 21 6 4.6986 0.3517 4.1454 22 6 3.8913 -0.9328 4.3838 23 1 -0.3633 0.4585 -0.9197 24 1 -0.3633 -1.0257 0.0627 25 1 -0.3633 0.5672 0.8569 26 1 1.1326 1.4108 -3.4724 27 1 2.5942 1.9425 2.0451 28 1 4.2147 1.3287 1.6253 29 1 3.7263 3.5220 3.5889 30 1 4.7539 2.8687 4.8869 31 1 5.3084 2.8072 3.1964 32 1 5.4586 0.1671 3.3861 33 1 5.1827 0.6524 5.0746 34 1 3.2489 -0.8106 5.2559 35 1 4.5701 -1.7716 4.5385 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260783829.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:04 Heat of formation + Delta-G solvation = 63.604509 kcal Electronic energy + Delta-G solvation = -16888.860083 eV Core-core repulsion = 14308.738542 eV Total energy + Delta-G solvation = -2580.121541 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.77722 -37.33847 -34.57614 -32.33091 -31.13630 -30.14316 -28.46212 -25.93622 -25.23000 -24.05286 -21.90580 -21.60964 -19.03086 -18.16967 -16.73950 -15.95690 -15.07732 -14.98928 -14.71182 -14.27920 -13.85022 -13.22936 -12.91809 -12.86462 -12.53254 -12.09252 -11.77674 -11.70046 -11.49831 -11.25555 -11.04066 -10.92640 -10.89184 -10.48338 -10.41648 -9.77670 -9.67931 -9.25241 -8.50733 -8.47089 -8.12388 -7.44578 -6.18517 -4.22894 2.78219 3.22229 3.29427 3.32007 3.49426 3.63400 4.18833 4.32808 5.02950 5.14633 5.17549 5.42057 5.52230 5.61916 5.74785 5.77152 5.99303 5.99976 6.07448 6.19213 6.24555 6.32192 6.47516 6.56345 6.72569 6.86681 6.98249 7.27981 7.37145 7.46755 7.49982 7.65655 7.80154 8.13237 8.20753 8.51859 8.78389 9.41812 10.89731 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.029598 B = 0.007406 C = 0.006730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.778162 B = 3779.881592 C = 4159.385748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.092 3.908 3 H 0.060 0.940 4 C -0.522 4.522 5 H 0.056 0.944 6 C 0.070 3.930 7 N -0.882 5.882 8 Si 0.892 3.108 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.166 3.834 13 N -0.480 5.480 14 H 0.435 0.565 15 N -0.318 5.318 16 C 0.083 3.917 17 C -0.276 4.276 18 C 0.149 3.851 19 N -0.545 5.545 20 C 0.027 3.973 21 C 0.062 3.938 22 C -0.027 4.027 23 H 0.073 0.927 24 H 0.026 0.974 25 H 0.019 0.981 26 H 0.264 0.736 27 H 0.080 0.920 28 H 0.037 0.963 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.023 0.977 32 H 0.037 0.963 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.180 0.891 9.962 10.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.072 3.928 3 H 0.078 0.922 4 C -0.560 4.560 5 H 0.074 0.926 6 C -0.133 4.133 7 N -0.519 5.519 8 Si 0.719 3.281 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.037 3.963 13 N -0.187 5.187 14 H 0.279 0.721 15 N -0.140 5.140 16 C -0.086 4.086 17 C -0.288 4.288 18 C 0.021 3.979 19 N -0.270 5.270 20 C -0.121 4.121 21 C -0.067 4.067 22 C -0.067 4.067 23 H 0.092 0.908 24 H 0.045 0.955 25 H 0.038 0.962 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.469 -0.184 10.417 10.981 hybrid contribution 0.728 -0.047 -2.009 2.137 sum 4.197 -0.232 8.408 9.400 Atomic orbital electron populations 1.21735 0.97672 0.98711 1.00630 1.17706 0.92486 0.96176 0.86469 0.92157 1.20951 1.36721 1.08402 0.89948 0.92576 1.24910 0.94854 0.94604 0.98963 1.69941 1.44107 1.13734 1.24158 0.86606 0.78829 0.80143 0.82489 1.20412 1.21092 1.19954 1.21390 0.93847 0.84842 0.96203 1.46207 1.43375 1.10692 1.18447 0.72129 1.76678 1.15526 1.22908 0.98865 1.21966 0.98234 0.91271 0.97135 1.19472 1.12623 0.97606 0.99079 1.20270 0.98151 0.93201 0.86304 1.61818 1.40253 1.01785 1.23130 1.22328 0.97784 0.91165 1.00810 1.22049 0.93538 0.91425 0.99707 1.20089 0.96513 0.96671 0.93426 0.90763 0.95465 0.96165 0.92616 0.90211 0.94461 0.91311 0.91745 0.95825 0.94498 0.90660 0.89832 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.05 37.16 0.34 -2.59 16 2 C 0.09 2.20 2.56 -92.92 -0.24 1.97 16 3 H 0.06 1.56 7.46 -51.93 -0.39 1.17 16 4 C -0.52 -13.67 8.46 -34.44 -0.29 -13.96 16 5 H 0.06 1.49 7.76 -52.49 -0.41 1.08 16 6 C 0.07 1.84 5.17 -17.82 -0.09 1.75 16 7 N -0.88 -24.04 12.16 55.43 0.67 -23.37 16 8 Si 0.89 20.56 29.55 -169.99 -5.02 15.54 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 C 0.17 3.67 5.64 -82.44 -0.46 3.21 16 13 N -0.48 -9.98 7.38 33.36 0.25 -9.74 16 14 H 0.44 8.22 8.96 -182.38 -1.63 6.58 16 15 N -0.32 -6.55 12.67 33.77 0.43 -6.12 16 16 C 0.08 1.61 7.20 -82.35 -0.59 1.02 16 17 C -0.28 -5.73 5.96 -104.98 -0.63 -6.36 16 18 C 0.15 2.72 5.32 -4.66 -0.02 2.69 16 19 N -0.55 -8.35 4.84 -243.57 -1.18 -9.53 16 20 C 0.03 0.33 9.58 60.07 0.58 0.91 16 21 C 0.06 0.84 5.51 -3.56 -0.02 0.82 16 22 C -0.03 -0.40 6.54 -27.43 -0.18 -0.58 16 23 H 0.07 1.82 6.83 -51.93 -0.35 1.46 16 24 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 27 H 0.08 1.48 8.01 -51.93 -0.42 1.06 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.65 7.97 -51.93 -0.41 0.23 16 31 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.04 0.53 8.06 -51.93 -0.42 0.11 16 33 H 0.07 0.81 7.85 -51.93 -0.41 0.40 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 287.10 15.07 4.33 4.33 Total: -1.00 -28.78 287.10 -8.68 -37.46 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.53 Total: 2.56 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -1.62 Total: -11.13 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.17 Total: -48.75 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.78 -8.68 -37.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260783829.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.062 kcal (2) G-P(sol) polarization free energy of solvation -28.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds