Wall clock time and date at job start Mon Mar 30 2020 04:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46773 * 2 1 4 4 N 1.46497 * 109.47387 * 119.99688 * 2 1 3 5 5 C 1.39739 * 120.00051 * 115.04795 * 4 2 1 6 6 C 1.39271 * 120.87635 * 176.80097 * 5 4 2 7 7 N 1.32268 * 119.00863 * 179.72222 * 6 5 4 8 8 C 1.31790 * 120.89684 * 0.56678 * 7 6 5 9 9 N 1.31792 * 121.93282 * 359.70431 * 8 7 6 10 10 C 1.32269 * 120.90057 * 0.02562 * 9 8 7 11 11 C 1.46502 * 120.00113 * 295.05643 * 4 2 1 12 12 H 1.09000 * 109.47123 * 356.59923 * 11 4 2 13 13 C 1.52992 * 109.47327 * 116.60351 * 11 4 2 14 14 C 1.50706 * 109.46788 * 236.60167 * 11 4 2 15 15 H 1.07997 * 120.00231 * 354.39332 * 14 11 4 16 16 C 1.37871 * 119.99715 * 174.38609 * 14 11 4 17 17 N 1.31516 * 120.00302 * 0.02562 * 16 14 11 18 18 Si 1.86806 * 119.99873 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47213 * 180.02562 * 18 16 14 20 20 H 1.48504 * 109.46904 * 300.00288 * 18 16 14 21 21 H 1.48493 * 109.47203 * 59.99942 * 18 16 14 22 22 H 1.09002 * 109.47524 * 305.02385 * 1 2 3 23 23 H 1.09000 * 109.47226 * 65.02994 * 1 2 3 24 24 H 1.09008 * 109.46680 * 185.02514 * 1 2 3 25 25 H 1.09000 * 109.47449 * 240.00467 * 2 1 3 26 26 H 1.08995 * 109.47031 * 184.81175 * 3 2 1 27 27 H 1.08996 * 109.47321 * 304.81509 * 3 2 1 28 28 H 1.09007 * 109.46845 * 64.81302 * 3 2 1 29 29 H 1.07997 * 120.49595 * 359.97368 * 6 5 4 30 30 H 1.08002 * 119.03372 * 179.73323 * 8 7 6 31 31 H 1.07993 * 120.49407 * 180.02562 * 10 9 8 32 32 H 1.08996 * 109.47797 * 65.32154 * 13 11 4 33 33 H 1.09001 * 109.47349 * 185.32035 * 13 11 4 34 34 H 1.08996 * 109.47294 * 305.31828 * 13 11 4 35 35 H 0.97001 * 120.00177 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.7344 -1.8840 1.0706 6 6 3.2639 -2.5209 2.1902 7 7 3.9306 -3.6519 2.0293 8 6 4.1056 -4.1696 0.8301 9 7 3.6252 -3.5948 -0.2542 10 6 2.9425 -2.4644 -0.1781 11 6 1.7560 -0.1300 2.5240 12 1 1.2420 0.8256 2.4200 13 6 0.8786 -1.0969 3.3215 14 6 3.0612 0.0779 3.2483 15 1 3.9849 -0.2643 2.8057 16 6 3.0759 0.7052 4.4760 17 7 1.9510 1.1217 5.0152 18 14 4.6938 0.9636 5.3734 19 1 4.4397 1.6552 6.6627 20 1 5.3302 -0.3524 5.6352 21 1 5.5974 1.7926 4.5361 22 1 -0.3634 0.5898 0.8416 23 1 -0.3634 0.4338 -0.9316 24 1 -0.3633 -1.0238 0.0900 25 1 1.8934 -0.5137 -0.8900 26 1 3.1265 1.4438 -0.0862 27 1 1.6079 1.9807 -0.8437 28 1 1.7486 1.9308 0.9300 29 1 3.1287 -2.0998 3.1755 30 1 4.6586 -5.0922 0.7330 31 1 2.5514 -1.9992 -1.0708 32 1 1.4295 -2.0189 3.5070 33 1 0.6053 -0.6395 4.2724 34 1 -0.0242 -1.3211 2.7535 35 1 1.9614 1.5627 5.8791 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261123469.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:49 Heat of formation + Delta-G solvation = 38.391402 kcal Electronic energy + Delta-G solvation = -17343.060610 eV Core-core repulsion = 14761.845747 eV Total energy + Delta-G solvation = -2581.214863 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.80159 -39.06257 -35.63213 -34.28490 -33.69900 -31.91802 -29.20952 -28.08895 -27.17263 -25.35073 -24.53691 -23.04986 -20.64163 -19.33118 -18.15638 -17.91369 -17.30428 -16.57811 -15.71396 -15.37756 -15.03520 -14.85624 -14.54242 -14.21694 -13.96333 -13.42102 -13.33282 -13.25148 -12.90243 -12.83396 -12.45874 -12.40270 -12.17927 -12.13849 -11.99627 -11.51910 -11.48141 -11.31765 -10.91320 -10.53638 -9.91083 -8.33236 -8.02039 -6.28517 0.32057 0.46153 1.39247 1.42364 1.48117 2.27959 2.45759 3.10484 3.12361 3.50751 3.67200 3.79220 3.98612 4.12364 4.27273 4.43020 4.67840 4.72911 4.81921 4.83277 4.94187 4.96714 4.98530 5.08540 5.19599 5.35311 5.43206 5.44009 5.59541 5.68434 5.82398 6.10211 6.22297 6.43156 6.77594 6.86601 7.40722 7.42138 8.86243 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.019698 B = 0.011330 C = 0.008466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.122092 B = 2470.793002 C = 3306.598679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.131 3.869 3 C -0.152 4.152 4 N -0.590 5.590 5 C 0.138 3.862 6 C 0.056 3.944 7 N -0.507 5.507 8 C 0.186 3.814 9 N -0.491 5.491 10 C 0.043 3.957 11 C 0.281 3.719 12 H 0.040 0.960 13 C -0.143 4.143 14 C -0.535 4.535 15 H 0.049 0.951 16 C 0.033 3.967 17 N -0.906 5.906 18 Si 0.940 3.060 19 H -0.282 1.282 20 H -0.277 1.277 21 H -0.277 1.277 22 H 0.043 0.957 23 H 0.092 0.908 24 H 0.051 0.949 25 H 0.101 0.899 26 H 0.044 0.956 27 H 0.090 0.910 28 H 0.041 0.959 29 H 0.171 0.829 30 H 0.210 0.790 31 H 0.185 0.815 32 H 0.034 0.966 33 H 0.059 0.941 34 H 0.030 0.970 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.872 -1.897 -9.520 9.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.028 3.972 3 C -0.210 4.210 4 N -0.296 5.296 5 C 0.025 3.975 6 C -0.116 4.116 7 N -0.220 5.220 8 C -0.102 4.102 9 N -0.204 5.204 10 C -0.129 4.129 11 C 0.179 3.821 12 H 0.057 0.943 13 C -0.201 4.201 14 C -0.573 4.573 15 H 0.067 0.933 16 C -0.168 4.168 17 N -0.545 5.545 18 Si 0.766 3.234 19 H -0.207 1.207 20 H -0.202 1.202 21 H -0.202 1.202 22 H 0.063 0.937 23 H 0.110 0.890 24 H 0.070 0.930 25 H 0.119 0.881 26 H 0.063 0.937 27 H 0.109 0.891 28 H 0.061 0.939 29 H 0.187 0.813 30 H 0.227 0.773 31 H 0.201 0.799 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.563 -2.452 -9.427 9.865 hybrid contribution 0.403 1.097 1.174 1.656 sum -1.160 -1.355 -8.253 8.443 Atomic orbital electron populations 1.22142 0.94309 1.01854 1.02853 1.21300 0.94856 0.93429 0.87571 1.22080 1.00812 0.95784 1.02330 1.47391 1.54500 1.20234 1.07462 1.19744 0.92603 0.89011 0.96109 1.23618 0.95969 0.91596 1.00388 1.68239 1.14320 1.11143 1.28341 1.24867 1.00854 1.01569 0.82938 1.68130 1.08890 1.09296 1.34095 1.23030 1.00366 0.93516 0.96000 1.18454 0.93824 0.92063 0.77733 0.94251 1.22104 0.97700 0.99192 1.01150 1.21507 0.93605 1.38416 1.03784 0.93285 1.25406 0.98582 0.94931 0.97894 1.69962 1.26832 1.39561 1.18112 0.85886 0.81056 0.78289 0.78122 1.20679 1.20233 1.20233 0.93741 0.88962 0.93004 0.88085 0.93701 0.89144 0.93944 0.81258 0.77321 0.79873 0.94731 0.92175 0.95131 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 9.19 71.98 0.66 -3.25 16 2 C 0.13 3.80 3.14 44.99 0.14 3.95 16 3 C -0.15 -4.41 9.19 71.98 0.66 -3.75 16 4 N -0.59 -22.20 2.41 -652.98 -1.58 -23.78 16 5 C 0.14 5.30 6.05 38.38 0.23 5.54 16 6 C 0.06 2.42 8.25 84.88 0.70 3.12 16 7 N -0.51 -20.53 10.43 -199.56 -2.08 -22.61 16 8 C 0.19 6.48 12.28 180.89 2.22 8.70 16 9 N -0.49 -16.93 10.43 -199.56 -2.08 -19.01 16 10 C 0.04 1.44 10.55 84.88 0.90 2.33 16 11 C 0.28 12.58 1.70 44.24 0.08 12.65 16 12 H 0.04 1.91 6.07 -2.39 -0.01 1.90 16 13 C -0.14 -6.36 8.86 71.98 0.64 -5.72 16 14 C -0.53 -26.84 6.35 25.60 0.16 -26.68 16 15 H 0.05 2.57 6.59 -2.91 -0.02 2.55 16 16 C 0.03 1.70 5.33 84.65 0.45 2.16 16 17 N -0.91 -48.07 11.79 21.45 0.25 -47.82 16 18 Si 0.94 42.20 29.54 68.60 2.03 44.23 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 22 H 0.04 1.30 7.59 -2.39 -0.02 1.28 16 23 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.10 2.43 5.43 -2.39 -0.01 2.42 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.04 1.47 6.55 -2.38 -0.02 1.46 16 29 H 0.17 8.10 4.15 -2.91 -0.01 8.09 16 30 H 0.21 5.64 8.06 -2.91 -0.02 5.62 16 31 H 0.18 4.85 5.91 -2.91 -0.02 4.83 16 32 H 0.03 1.55 5.38 -2.39 -0.01 1.53 16 33 H 0.06 2.94 6.66 -2.39 -0.02 2.92 16 34 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 Total: -1.00 -56.60 278.24 4.47 -52.13 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 1.09 Total: 17.81 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: 6.84 Total: -0.95 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -5.49 Total: -113.22 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -56.60 4.47 -52.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261123469.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.522 kcal (2) G-P(sol) polarization free energy of solvation -56.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds