Wall clock time and date at job start Mon Mar 30 2020 03:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46087 * 2 1 4 4 C 1.53369 * 109.46442 * 119.97911 * 2 1 3 5 5 C 1.50828 * 108.38307 * 169.94513 * 4 2 1 6 6 C 1.35804 * 124.13815 * 343.46262 * 5 4 2 7 7 C 1.39302 * 108.02755 * 179.86379 * 6 5 4 8 8 N 1.31074 * 108.07756 * 0.02562 * 7 6 5 9 9 N 1.34320 * 128.03080 * 163.38712 * 5 4 2 10 10 C 1.46501 * 126.09569 * 0.10848 * 9 5 4 11 11 C 1.50707 * 109.47077 * 90.00063 * 10 9 5 12 12 H 1.08005 * 119.99660 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00104 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99984 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99719 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47359 * 59.99593 * 15 13 11 17 17 H 1.48507 * 109.46665 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47202 * 299.99424 * 15 13 11 19 19 C 1.50836 * 124.06958 * 359.80100 * 6 5 4 20 20 H 1.08995 * 109.68205 * 103.19660 * 19 6 5 21 21 N 1.46905 * 109.68239 * 223.71092 * 19 6 5 22 22 C 1.53108 * 109.46720 * 240.02171 * 2 1 3 23 23 H 1.09005 * 109.46849 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47489 * 299.97885 * 1 2 3 25 25 H 1.08999 * 109.46782 * 59.98338 * 1 2 3 26 26 H 1.08998 * 109.67875 * 289.66819 * 4 2 1 27 27 H 1.09002 * 109.67989 * 50.18552 * 4 2 1 28 28 H 1.07999 * 125.95764 * 180.02562 * 7 6 5 29 29 H 1.08990 * 109.47596 * 209.99905 * 10 9 5 30 30 H 1.08998 * 109.46847 * 330.00510 * 10 9 5 31 31 H 0.97001 * 119.99882 * 180.02562 * 14 13 11 32 32 H 1.00901 * 110.99869 * 299.48271 * 21 19 6 33 33 H 1.00896 * 110.99543 * 63.43393 * 21 19 6 34 34 H 1.09001 * 109.46335 * 49.70880 * 22 2 1 35 35 H 1.09001 * 109.45702 * 289.73012 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0410 -0.7226 1.2526 5 6 3.5283 -0.9285 1.1094 6 6 4.2019 -0.8286 -0.0656 7 6 5.5488 -1.0784 0.1871 8 7 5.6842 -1.3209 1.4681 9 7 4.4179 -1.2320 2.0689 10 6 4.1204 -1.4333 3.4892 11 6 3.8057 -2.8864 3.7356 12 1 3.8250 -3.5895 2.9160 13 6 3.4923 -3.3180 5.0070 14 7 3.4683 -2.4617 6.0049 15 14 3.1016 -5.1190 5.3120 16 1 4.2704 -5.9509 4.9287 17 1 2.8002 -5.3230 6.7518 18 1 1.9241 -5.5148 4.4983 19 6 3.5520 -0.5024 -1.3871 20 1 3.7504 0.5374 -1.6470 21 7 4.0872 -1.3844 -2.4328 22 6 2.0402 -0.7213 -1.2504 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5135 0.8901 25 1 -0.3633 0.5141 -0.8898 26 1 1.8376 -0.1159 2.1350 27 1 1.5437 -1.6878 1.3481 28 1 6.3430 -1.0731 -0.5448 29 1 4.9846 -1.1424 4.0863 30 1 3.2622 -0.8230 3.7707 31 1 3.2481 -2.7654 6.8994 32 1 5.0837 -1.2625 -2.5336 33 1 3.8581 -2.3488 -2.2445 34 1 1.5346 -0.3240 -2.1306 35 1 1.8341 -1.7881 -1.1637 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308925997.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:57 Heat of formation + Delta-G solvation = 29.361917 kcal Electronic energy + Delta-G solvation = -16842.999563 eV Core-core repulsion = 14261.393152 eV Total energy + Delta-G solvation = -2581.606411 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.37099 -38.34626 -35.97728 -35.03482 -33.13138 -31.31271 -29.10581 -28.61331 -27.20038 -25.29620 -23.06695 -21.83337 -21.27163 -19.64466 -18.86273 -17.61571 -16.69915 -16.55073 -16.15722 -15.54121 -15.16185 -14.85849 -14.63186 -14.42533 -14.21321 -13.64786 -13.54161 -13.26207 -13.01947 -12.84138 -12.74135 -12.38862 -12.33079 -11.88121 -11.69233 -11.53376 -11.50186 -11.28776 -10.79389 -10.12314 -9.73074 -9.04556 -8.39390 -6.57808 1.12055 1.33582 1.35438 1.44508 1.85778 1.93131 2.29706 2.90543 3.63339 3.70081 3.85474 3.95187 4.15165 4.26640 4.45135 4.51995 4.62662 4.66526 4.71581 4.81450 4.85423 4.86524 5.08045 5.16362 5.19647 5.31118 5.36840 5.45784 5.46731 5.56304 5.74088 5.91477 6.23810 6.32968 6.55703 6.68034 6.99389 7.13750 8.67278 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.025678 B = 0.007610 C = 0.006763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.170017 B = 3678.487117 C = 4139.167990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.074 4.074 3 H 0.077 0.923 4 C -0.048 4.048 5 C 0.082 3.918 6 C -0.299 4.299 7 C 0.036 3.964 8 N -0.353 5.353 9 N -0.350 5.350 10 C 0.273 3.727 11 C -0.555 4.555 12 H 0.048 0.952 13 C 0.022 3.978 14 N -0.919 5.919 15 Si 0.972 3.028 16 H -0.275 1.275 17 H -0.271 1.271 18 H -0.263 1.263 19 C 0.181 3.819 20 H 0.087 0.913 21 N -0.832 5.832 22 C -0.098 4.098 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.203 0.797 29 H 0.019 0.981 30 H 0.043 0.957 31 H 0.275 0.725 32 H 0.345 0.655 33 H 0.339 0.661 34 H 0.091 0.909 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.259 3.967 -13.823 15.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.094 4.094 3 H 0.095 0.905 4 C -0.087 4.087 5 C -0.050 4.050 6 C -0.313 4.313 7 C -0.147 4.147 8 N -0.175 5.175 9 N -0.129 5.129 10 C 0.154 3.846 11 C -0.593 4.593 12 H 0.067 0.933 13 C -0.179 4.179 14 N -0.557 5.557 15 Si 0.795 3.205 16 H -0.200 1.200 17 H -0.195 1.195 18 H -0.188 1.188 19 C 0.068 3.932 20 H 0.105 0.895 21 N -0.359 5.359 22 C -0.136 4.136 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.220 0.780 29 H 0.037 0.963 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.158 0.842 33 H 0.150 0.850 34 H 0.109 0.891 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.949 4.092 -13.028 14.525 hybrid contribution 0.378 -1.139 1.190 1.690 sum -4.571 2.953 -11.838 13.029 Atomic orbital electron populations 1.21786 0.92900 1.02349 1.02779 1.21085 0.96850 0.99251 0.92212 0.90465 1.20451 0.86606 1.01493 1.00159 1.21595 0.94685 0.99450 0.89304 1.21157 0.93212 1.19310 0.97588 1.23880 0.97584 0.99937 0.93340 1.77456 1.03285 1.26718 1.10046 1.49018 1.04422 1.50399 1.09050 1.19148 0.95987 0.97275 0.72227 1.21371 1.49736 0.93412 0.94826 0.93330 1.25784 0.94084 1.03132 0.94932 1.70000 1.47747 1.36750 1.01162 0.85394 0.78976 0.78247 0.77835 1.20031 1.19503 1.18800 1.19786 0.93375 0.97073 0.82962 0.89467 1.59142 1.19504 1.10716 1.46490 1.21627 0.93938 1.00426 0.97633 0.92622 0.92467 0.90340 0.91422 0.90715 0.78014 0.96319 0.93910 0.91622 0.84164 0.84954 0.89055 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.16 71.98 0.66 -2.05 16 2 C -0.07 -1.79 2.69 -10.64 -0.03 -1.82 16 3 H 0.08 1.81 8.11 -2.39 -0.02 1.79 16 4 C -0.05 -1.61 5.20 30.01 0.16 -1.46 16 5 C 0.08 3.28 6.73 41.65 0.28 3.56 16 6 C -0.30 -10.14 5.59 -20.13 -0.11 -10.26 16 7 C 0.04 1.31 11.57 85.06 0.98 2.29 16 8 N -0.35 -16.52 12.60 -57.27 -0.72 -17.24 16 9 N -0.35 -16.97 3.59 -338.34 -1.21 -18.18 16 10 C 0.27 14.89 6.05 85.63 0.52 15.40 16 11 C -0.56 -31.80 9.39 25.60 0.24 -31.56 16 12 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 13 C 0.02 1.21 5.46 84.65 0.46 1.68 16 14 N -0.92 -52.84 13.29 21.45 0.28 -52.56 16 15 Si 0.97 43.41 29.54 68.60 2.03 45.44 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 17 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 18 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 19 C 0.18 4.53 3.61 44.33 0.16 4.69 16 20 H 0.09 2.06 8.14 -2.39 -0.02 2.05 16 21 N -0.83 -18.05 9.22 -171.11 -1.58 -19.63 16 22 C -0.10 -2.25 4.77 30.75 0.15 -2.10 16 23 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 24 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.07 2.35 7.76 -2.39 -0.02 2.33 16 27 H 0.07 2.62 8.12 -2.39 -0.02 2.60 16 28 H 0.20 5.48 7.95 -2.91 -0.02 5.46 16 29 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.04 2.34 7.57 -2.39 -0.02 2.32 16 31 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 32 H 0.35 6.64 8.61 -89.69 -0.77 5.87 16 33 H 0.34 7.60 8.95 -89.70 -0.80 6.80 16 34 H 0.09 1.71 8.11 -2.39 -0.02 1.69 16 35 H 0.05 1.35 8.07 -2.39 -0.02 1.33 16 Total: -1.00 -65.02 289.85 1.78 -63.24 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -0.48 Total: 20.57 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: 3.47 Total: -21.63 kcal Atomic # 7 Polarization: -104.39 SS G_CDS: -3.23 Total: -107.62 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -65.02 1.78 -63.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308925997.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.602 kcal (2) G-P(sol) polarization free energy of solvation -65.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds