Wall clock time and date at job start Mon Mar 30 2020 03:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.47016 * 2 1 4 4 N 1.46899 * 109.46720 * 119.99841 * 2 1 3 5 5 C 1.46902 * 111.00035 * 68.40535 * 4 2 1 6 6 C 1.50699 * 109.47150 * 72.28954 * 5 4 2 7 7 H 1.07998 * 120.00065 * 356.54447 * 6 5 4 8 8 C 1.37875 * 119.99690 * 176.53576 * 6 5 4 9 9 N 1.31507 * 120.00422 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99822 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47220 * 90.00150 * 10 8 6 12 12 H 1.48504 * 109.47411 * 210.00483 * 10 8 6 13 13 H 1.48504 * 109.47223 * 330.00381 * 10 8 6 14 14 C 1.40334 * 111.00534 * 304.44864 * 4 2 1 15 15 C 1.35196 * 120.72953 * 90.87086 * 14 4 2 16 16 N 1.36542 * 120.54385 * 180.28916 * 15 14 4 17 17 H 0.97001 * 118.92609 * 179.68035 * 16 15 14 18 18 C 1.35788 * 122.14428 * 359.70468 * 16 15 14 19 19 C 1.34661 * 121.45518 * 359.97438 * 18 16 15 20 20 C 1.42236 * 119.23418 * 0.02562 * 19 18 16 21 21 N 1.32292 * 120.95863 * 179.97438 * 20 19 18 22 22 H 1.08998 * 109.46928 * 307.31667 * 1 2 3 23 23 H 1.09001 * 109.46558 * 67.31543 * 1 2 3 24 24 H 1.08996 * 109.46642 * 187.31329 * 1 2 3 25 25 H 1.08995 * 109.47263 * 240.00015 * 2 1 3 26 26 H 1.08998 * 109.47013 * 177.15729 * 3 2 1 27 27 H 1.08993 * 109.47532 * 297.15984 * 3 2 1 28 28 H 1.09002 * 109.47020 * 57.16267 * 3 2 1 29 29 H 1.08995 * 109.46962 * 192.29153 * 5 4 2 30 30 H 1.08998 * 109.46723 * 312.29008 * 5 4 2 31 31 H 0.96998 * 120.00317 * 179.97438 * 9 8 6 32 32 H 1.08001 * 119.72658 * 359.97292 * 15 14 4 33 33 H 1.07996 * 119.27578 * 179.97438 * 18 16 15 34 34 H 1.07999 * 120.38270 * 180.02562 * 19 18 16 35 35 H 0.97002 * 119.99906 * 359.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.7192 -2.1291 1.1375 6 6 2.6148 -2.7861 0.1190 7 1 3.2959 -2.1873 -0.4674 8 6 2.5646 -4.1517 -0.0642 9 7 1.7350 -4.8809 0.6495 10 14 3.6752 -4.9662 -1.3262 11 1 4.9577 -5.3495 -0.6830 12 1 3.0083 -6.1798 -1.8626 13 1 3.9426 -4.0168 -2.4363 14 6 1.4886 -0.1175 2.3643 15 6 0.3326 -0.5750 2.8954 16 7 -0.1838 -0.0089 4.0255 17 1 -1.0171 -0.3526 4.3838 18 6 0.4310 1.0199 4.6639 19 6 1.5892 1.5364 4.2110 20 6 2.1807 0.9919 3.0376 21 7 3.3176 1.4734 2.5624 22 1 -0.3633 0.6230 0.8173 23 1 -0.3632 0.3963 -0.9482 24 1 -0.3632 -1.0193 0.1308 25 1 1.8934 -0.5138 -0.8899 26 1 3.1288 1.4429 0.0510 27 1 1.7189 1.9414 -0.9143 28 1 1.6358 1.9708 0.8635 29 1 1.8904 -2.5786 2.1155 30 1 0.6773 -2.2703 0.8500 31 1 1.6994 -5.8416 0.5204 32 1 -0.1894 -1.3917 2.4190 33 1 -0.0189 1.4332 5.5545 34 1 2.0635 2.3545 4.7326 35 1 3.7599 2.2085 3.0151 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380113962.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:51 Heat of formation + Delta-G solvation = 66.470793 kcal Electronic energy + Delta-G solvation = -17127.526025 eV Core-core repulsion = 14547.528776 eV Total energy + Delta-G solvation = -2579.997249 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.01144 -37.33403 -34.34710 -32.70860 -31.47646 -29.89246 -28.48364 -26.72036 -25.87095 -22.96755 -22.11040 -21.46565 -19.69899 -17.78110 -16.63250 -16.12747 -15.54827 -15.22848 -14.53229 -14.14442 -13.74030 -13.45064 -13.33222 -12.97428 -12.58690 -12.05272 -11.68795 -11.49466 -11.34446 -10.91573 -10.69570 -10.64058 -10.50978 -10.40435 -9.91051 -9.84265 -9.22580 -9.03329 -8.46888 -8.37645 -7.36935 -6.46382 -5.98205 -3.98316 1.82483 2.07529 3.37092 3.42358 3.42700 3.47623 4.21792 4.46970 4.79550 4.91359 5.21941 5.36791 5.62692 5.64470 5.75674 5.93047 5.98734 6.14677 6.20934 6.33869 6.49000 6.50640 6.57178 6.66019 7.00749 7.03096 7.17048 7.30647 7.36197 7.47548 7.61615 7.92952 8.23842 8.29289 8.70650 9.06203 9.10130 9.65284 11.11744 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.029300 B = 0.007809 C = 0.007269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.408260 B = 3584.714983 C = 3850.900071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.094 3.906 3 C -0.130 4.130 4 N -0.463 5.463 5 C 0.189 3.811 6 C -0.499 4.499 7 H 0.065 0.935 8 C 0.055 3.945 9 N -0.902 5.902 10 Si 0.898 3.102 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.071 3.929 15 C 0.025 3.975 16 N -0.609 5.609 17 H 0.408 0.592 18 C 0.134 3.866 19 C -0.290 4.290 20 C 0.262 3.738 21 N -0.713 5.713 22 H 0.047 0.953 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.090 0.910 26 H 0.071 0.929 27 H 0.035 0.965 28 H 0.044 0.956 29 H 0.031 0.969 30 H -0.002 1.002 31 H 0.260 0.740 32 H 0.159 0.841 33 H 0.147 0.853 34 H 0.128 0.872 35 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.117 10.754 6.563 14.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.012 4.012 3 C -0.187 4.187 4 N -0.181 5.181 5 C 0.064 3.936 6 C -0.538 4.538 7 H 0.083 0.917 8 C -0.146 4.146 9 N -0.542 5.542 10 Si 0.726 3.274 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.033 4.033 15 C -0.102 4.102 16 N -0.216 5.216 17 H 0.242 0.758 18 C 0.003 3.997 19 C -0.321 4.321 20 C 0.079 3.921 21 N -0.329 5.329 22 H 0.066 0.934 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.108 0.892 26 H 0.090 0.910 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.016 0.984 31 H 0.069 0.931 32 H 0.176 0.824 33 H 0.165 0.835 34 H 0.146 0.854 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.916 10.364 5.615 13.189 hybrid contribution -0.787 -0.328 0.589 1.036 sum -6.703 10.036 6.204 13.569 Atomic orbital electron populations 1.22524 0.99011 1.01830 1.00845 1.21538 0.91279 0.94648 0.93740 1.21817 1.02810 0.95123 0.98998 1.59637 1.55691 1.04971 0.97826 1.19928 0.95176 0.80365 0.98089 1.21161 1.21079 0.91784 1.19777 0.91691 1.24949 0.95855 0.97277 0.96515 1.69938 1.37429 1.05963 1.40913 0.86497 0.80630 0.78719 0.81577 1.20692 1.21444 1.19786 1.19276 0.90994 0.96595 0.96418 1.22168 0.96182 1.01780 0.90063 1.40872 1.24519 1.31182 1.25035 0.75826 1.21291 0.94136 0.88574 0.95665 1.21592 0.99990 1.07442 1.03105 1.19988 0.91273 0.91744 0.89138 1.70732 1.09255 1.17344 1.35595 0.93439 0.93128 0.92005 0.89211 0.90997 0.94643 0.93669 0.95062 0.98440 0.93054 0.82382 0.83548 0.85402 0.87724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.24 7.97 37.16 0.30 -2.94 16 2 C 0.09 1.93 2.83 -67.71 -0.19 1.74 16 3 C -0.13 -2.43 7.91 37.16 0.29 -2.13 16 4 N -0.46 -10.51 4.34 -163.05 -0.71 -11.22 16 5 C 0.19 4.84 3.53 -4.98 -0.02 4.83 16 6 C -0.50 -14.20 8.54 -34.44 -0.29 -14.49 16 7 H 0.06 1.87 7.47 -52.49 -0.39 1.48 16 8 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 10 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.07 1.39 3.88 -81.46 -0.32 1.08 16 15 C 0.02 0.41 8.37 -16.54 -0.14 0.27 16 16 N -0.61 -7.13 5.26 -12.90 -0.07 -7.20 16 17 H 0.41 3.20 8.89 -40.82 -0.36 2.84 16 18 C 0.13 1.48 11.12 -17.07 -0.19 1.29 16 19 C -0.29 -4.11 9.92 -39.31 -0.39 -4.50 16 20 C 0.26 4.87 5.68 -82.55 -0.47 4.40 16 21 N -0.71 -14.11 11.92 33.50 0.40 -13.71 16 22 H 0.05 0.79 6.69 -51.93 -0.35 0.44 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 1.16 5.94 -51.93 -0.31 0.85 16 25 H 0.09 2.00 7.08 -51.93 -0.37 1.63 16 26 H 0.07 1.47 7.62 -51.93 -0.40 1.08 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.84 6.11 -51.93 -0.32 0.53 16 29 H 0.03 0.88 7.80 -51.93 -0.40 0.47 16 30 H 0.00 -0.05 5.21 -51.93 -0.27 -0.32 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.16 2.66 6.22 -52.49 -0.33 2.34 16 33 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 35 H 0.31 5.40 8.79 -40.82 -0.36 5.04 16 LS Contribution 279.40 15.07 4.21 4.21 Total: -1.00 -32.81 279.40 -6.64 -39.45 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -4.68 Total: 6.21 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -1.51 Total: -9.00 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: 0.36 Total: -57.88 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.81 -6.64 -39.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380113962.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.923 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds