Wall clock time and date at job start Mon Mar 30 2020 03:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.47016 * 2 1 4 4 N 1.46899 * 109.46720 * 119.99841 * 2 1 3 5 5 C 1.46902 * 111.00035 * 68.40535 * 4 2 1 6 6 C 1.50699 * 109.47150 * 72.28954 * 5 4 2 7 7 H 1.07998 * 120.00065 * 356.54447 * 6 5 4 8 8 C 1.37875 * 119.99690 * 176.53576 * 6 5 4 9 9 N 1.31507 * 120.00422 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99822 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47220 * 90.00150 * 10 8 6 12 12 H 1.48504 * 109.47411 * 210.00483 * 10 8 6 13 13 H 1.48504 * 109.47223 * 330.00381 * 10 8 6 14 14 C 1.40334 * 111.00534 * 304.44864 * 4 2 1 15 15 C 1.35196 * 120.72953 * 90.87086 * 14 4 2 16 16 N 1.36542 * 120.54385 * 180.28916 * 15 14 4 17 17 H 0.97001 * 118.92609 * 179.68035 * 16 15 14 18 18 C 1.35788 * 122.14428 * 359.70468 * 16 15 14 19 19 C 1.34661 * 121.45518 * 359.97438 * 18 16 15 20 20 C 1.42236 * 119.23418 * 0.02562 * 19 18 16 21 21 N 1.32292 * 120.95863 * 179.97438 * 20 19 18 22 22 H 1.08998 * 109.46928 * 307.31667 * 1 2 3 23 23 H 1.09001 * 109.46558 * 67.31543 * 1 2 3 24 24 H 1.08996 * 109.46642 * 187.31329 * 1 2 3 25 25 H 1.08995 * 109.47263 * 240.00015 * 2 1 3 26 26 H 1.08998 * 109.47013 * 177.15729 * 3 2 1 27 27 H 1.08993 * 109.47532 * 297.15984 * 3 2 1 28 28 H 1.09002 * 109.47020 * 57.16267 * 3 2 1 29 29 H 1.08995 * 109.46962 * 192.29153 * 5 4 2 30 30 H 1.08998 * 109.46723 * 312.29008 * 5 4 2 31 31 H 0.96998 * 120.00317 * 179.97438 * 9 8 6 32 32 H 1.08001 * 119.72658 * 359.97292 * 15 14 4 33 33 H 1.07996 * 119.27578 * 179.97438 * 18 16 15 34 34 H 1.07999 * 120.38270 * 180.02562 * 19 18 16 35 35 H 0.97002 * 119.99906 * 359.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.7192 -2.1291 1.1375 6 6 2.6148 -2.7861 0.1190 7 1 3.2959 -2.1873 -0.4674 8 6 2.5646 -4.1517 -0.0642 9 7 1.7350 -4.8809 0.6495 10 14 3.6752 -4.9662 -1.3262 11 1 4.9577 -5.3495 -0.6830 12 1 3.0083 -6.1798 -1.8626 13 1 3.9426 -4.0168 -2.4363 14 6 1.4886 -0.1175 2.3643 15 6 0.3326 -0.5750 2.8954 16 7 -0.1838 -0.0089 4.0255 17 1 -1.0171 -0.3526 4.3838 18 6 0.4310 1.0199 4.6639 19 6 1.5892 1.5364 4.2110 20 6 2.1807 0.9919 3.0376 21 7 3.3176 1.4734 2.5624 22 1 -0.3633 0.6230 0.8173 23 1 -0.3632 0.3963 -0.9482 24 1 -0.3632 -1.0193 0.1308 25 1 1.8934 -0.5138 -0.8899 26 1 3.1288 1.4429 0.0510 27 1 1.7189 1.9414 -0.9143 28 1 1.6358 1.9708 0.8635 29 1 1.8904 -2.5786 2.1155 30 1 0.6773 -2.2703 0.8500 31 1 1.6994 -5.8416 0.5204 32 1 -0.1894 -1.3917 2.4190 33 1 -0.0189 1.4332 5.5545 34 1 2.0635 2.3545 4.7326 35 1 3.7599 2.2085 3.0151 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380113962.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:51 Heat of formation + Delta-G solvation = 42.199581 kcal Electronic energy + Delta-G solvation = -17128.578504 eV Core-core repulsion = 14547.528776 eV Total energy + Delta-G solvation = -2581.049728 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.32229 -38.80447 -35.65527 -34.80653 -32.99567 -31.22212 -30.04925 -28.27989 -27.64231 -24.68674 -23.44437 -22.99125 -21.14534 -18.98972 -18.35130 -17.75216 -17.09161 -16.89705 -16.13287 -15.90132 -14.99086 -14.88181 -14.61934 -14.54951 -14.00130 -13.81571 -13.19395 -13.08388 -12.94795 -12.69458 -12.55156 -12.38957 -12.02957 -11.97004 -11.80599 -11.46484 -11.30072 -10.59927 -10.26783 -9.76546 -8.95740 -8.19948 -7.79290 -6.24926 0.70988 0.76981 1.40339 1.42159 1.53057 2.37009 2.42818 2.94196 3.13946 3.31820 3.84608 4.12299 4.15913 4.38282 4.43348 4.50714 4.61017 4.79912 4.85169 4.93922 5.02024 5.09796 5.11880 5.22995 5.30118 5.36938 5.52260 5.65792 5.74631 5.89038 6.16232 6.22139 6.51575 6.61895 6.89952 7.02155 7.43453 7.80438 8.92222 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.029300 B = 0.007809 C = 0.007269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.408260 B = 3584.714983 C = 3850.900071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.089 3.911 3 C -0.111 4.111 4 N -0.481 5.481 5 C 0.211 3.789 6 C -0.521 4.521 7 H 0.050 0.950 8 C 0.008 3.992 9 N -0.929 5.929 10 Si 0.961 3.039 11 H -0.278 1.278 12 H -0.277 1.277 13 H -0.269 1.269 14 C 0.018 3.982 15 C 0.053 3.947 16 N -0.590 5.590 17 H 0.433 0.567 18 C 0.164 3.836 19 C -0.316 4.316 20 C 0.254 3.746 21 N -0.767 5.767 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.044 0.956 25 H 0.060 0.940 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.045 0.955 29 H -0.001 1.001 30 H -0.009 1.009 31 H 0.264 0.736 32 H 0.151 0.849 33 H 0.211 0.789 34 H 0.149 0.851 35 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.831 11.584 7.794 16.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 C -0.169 4.169 4 N -0.200 5.200 5 C 0.086 3.914 6 C -0.560 4.560 7 H 0.069 0.931 8 C -0.190 4.190 9 N -0.569 5.569 10 Si 0.786 3.214 11 H -0.204 1.204 12 H -0.202 1.202 13 H -0.193 1.193 14 C -0.085 4.085 15 C -0.075 4.075 16 N -0.199 5.199 17 H 0.271 0.729 18 C 0.032 3.968 19 C -0.346 4.346 20 C 0.074 3.926 21 N -0.386 5.386 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.017 0.983 30 H 0.009 0.991 31 H 0.073 0.927 32 H 0.169 0.831 33 H 0.228 0.772 34 H 0.166 0.834 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.676 11.207 6.883 15.228 hybrid contribution -0.390 -0.589 0.315 0.773 sum -8.066 10.618 7.198 15.153 Atomic orbital electron populations 1.22343 0.96752 1.01133 1.02438 1.21559 0.93147 0.94939 0.92096 1.21616 1.01039 0.94139 1.00109 1.59451 1.57379 1.03307 0.99854 1.19478 0.94085 0.82575 0.95251 1.21440 1.21528 0.92438 1.20561 0.93131 1.25738 0.97180 0.97749 0.98358 1.70028 1.38523 1.06328 1.42058 0.85507 0.78713 0.77930 0.79209 1.20435 1.20181 1.19340 1.19429 0.93244 0.99109 0.96758 1.22001 0.94752 1.00145 0.90647 1.41003 1.25029 1.30634 1.23191 0.72930 1.22106 0.92506 0.86221 0.95925 1.21729 1.01594 1.08960 1.02322 1.20260 0.91052 0.91084 0.90239 1.70702 1.11094 1.19218 1.37553 0.92146 0.91113 0.93658 0.92214 0.93501 0.92250 0.93585 0.98333 0.99114 0.92709 0.83131 0.77235 0.83352 0.87154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.87 7.97 71.99 0.57 -5.29 16 2 C 0.09 3.75 2.83 44.92 0.13 3.87 16 3 C -0.11 -4.23 7.91 71.98 0.57 -3.66 16 4 N -0.48 -22.69 4.34 -669.78 -2.91 -25.60 16 5 C 0.21 11.34 3.53 85.56 0.30 11.64 16 6 C -0.52 -30.80 8.54 25.60 0.22 -30.58 16 7 H 0.05 3.06 7.47 -2.91 -0.02 3.04 16 8 C 0.01 0.46 5.46 84.66 0.46 0.92 16 9 N -0.93 -55.40 13.29 21.45 0.28 -55.11 16 10 Si 0.96 45.83 29.54 68.60 2.03 47.86 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 14 C 0.02 0.72 3.88 39.40 0.15 0.87 16 15 C 0.05 1.69 8.37 83.26 0.70 2.38 16 16 N -0.59 -11.50 5.26 -194.71 -1.02 -12.52 16 17 H 0.43 4.66 8.89 -92.71 -0.82 3.83 16 18 C 0.16 2.80 11.12 83.26 0.93 3.72 16 19 C -0.32 -8.07 9.92 22.44 0.22 -7.85 16 20 C 0.25 9.39 5.68 42.39 0.24 9.63 16 21 N -0.77 -31.26 11.92 -47.92 -0.57 -31.83 16 22 H 0.06 1.92 6.69 -2.39 -0.02 1.90 16 23 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.04 1.71 5.94 -2.39 -0.01 1.70 16 25 H 0.06 2.80 7.08 -2.39 -0.02 2.79 16 26 H 0.05 1.99 7.62 -2.39 -0.02 1.97 16 27 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 28 H 0.05 1.72 6.11 -2.39 -0.01 1.71 16 29 H 0.00 -0.09 7.80 -2.39 -0.02 -0.10 16 30 H -0.01 -0.46 5.21 -2.39 -0.01 -0.47 16 31 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 32 H 0.15 5.02 6.22 -2.91 -0.02 5.00 16 33 H 0.21 1.07 8.06 -2.91 -0.02 1.05 16 34 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 35 H 0.32 11.37 8.79 -92.71 -0.81 10.55 16 Total: -1.00 -75.32 279.40 1.77 -73.54 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -0.53 Total: 18.00 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 4.49 Total: -14.34 kcal Atomic # 7 Polarization: -120.84 SS G_CDS: -4.22 Total: -125.06 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -75.32 1.77 -73.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380113962.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.744 kcal (2) G-P(sol) polarization free energy of solvation -75.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds