Wall clock time and date at job start Mon Mar 30 2020 04:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47092 * 2 1 4 4 C 1.50699 * 109.47270 * 120.00289 * 2 1 3 5 5 H 1.08008 * 119.99953 * 120.00264 * 4 2 1 6 6 C 1.37872 * 119.99855 * 299.99637 * 4 2 1 7 7 N 1.31520 * 120.00097 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00202 * 0.02562 * 6 4 2 9 9 H 1.48494 * 109.47269 * 89.99909 * 8 6 4 10 10 H 1.48500 * 109.47152 * 209.99806 * 8 6 4 11 11 H 1.48500 * 109.46935 * 329.99602 * 8 6 4 12 12 N 1.46904 * 109.46884 * 240.00300 * 2 1 3 13 13 C 1.46899 * 110.99899 * 84.99853 * 12 2 1 14 14 C 1.53002 * 109.46867 * 179.97438 * 13 12 2 15 15 N 1.46502 * 109.47110 * 179.97438 * 14 13 12 16 16 C 1.32197 * 119.99689 * 115.91855 * 15 14 13 17 17 C 1.46857 * 121.21132 * 354.01874 * 16 15 14 18 18 C 1.34671 * 118.53384 * 179.76480 * 17 16 15 19 19 N 1.35905 * 121.27085 * 0.52615 * 18 17 16 20 20 H 0.97001 * 118.59752 * 179.74129 * 19 18 17 21 21 C 1.35899 * 122.80346 * 359.72434 * 19 18 17 22 22 C 1.34663 * 121.27344 * 359.97438 * 21 19 18 23 23 H 1.08999 * 109.47067 * 299.99531 * 1 2 3 24 24 H 1.09002 * 109.47549 * 59.99717 * 1 2 3 25 25 H 1.09002 * 109.47092 * 180.02562 * 1 2 3 26 26 H 0.96995 * 120.00172 * 179.97438 * 7 6 4 27 27 H 1.00897 * 111.00130 * 321.04266 * 12 2 1 28 28 H 1.08995 * 109.47291 * 299.99544 * 13 12 2 29 29 H 1.08998 * 109.47047 * 60.00510 * 13 12 2 30 30 H 1.08996 * 109.47491 * 299.99768 * 14 13 12 31 31 H 1.09003 * 109.46909 * 59.99834 * 14 13 12 32 32 H 1.07999 * 120.73445 * 0.02562 * 17 16 15 33 33 H 1.07995 * 119.36082 * 180.24640 * 18 17 16 34 34 H 1.08004 * 119.36364 * 180.02562 * 21 19 18 35 35 H 1.08005 * 120.73091 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 2.1381 -0.8591 3.5565 8 14 0.6248 1.2790 2.6542 9 1 -0.8027 0.8726 2.6999 10 1 0.9760 1.9950 3.9069 11 1 0.8471 2.1764 1.4921 12 7 2.0196 -0.6925 -1.1995 13 6 2.0823 0.2227 -2.3469 14 6 2.5960 -0.5328 -3.5742 15 7 2.6580 0.3797 -4.7187 16 6 3.8237 0.6685 -5.2714 17 6 5.0831 0.1953 -4.6826 18 6 6.2395 0.5172 -5.2930 19 7 6.2544 1.2716 -6.4234 20 1 7.1097 1.4836 -6.8289 21 6 5.1221 1.7415 -7.0099 22 6 3.9066 1.4791 -6.4932 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.9041 -0.5275 4.4375 27 1 1.4495 -1.4979 -1.4101 28 1 1.0869 0.6163 -2.5525 29 1 2.7587 1.0462 -2.1183 30 1 3.5915 -0.9261 -3.3685 31 1 1.9199 -1.3566 -3.8030 32 1 5.0817 -0.4012 -3.7823 33 1 7.1733 0.1729 -4.8738 34 1 5.1986 2.3361 -7.9082 35 1 3.0123 1.8566 -6.9669 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380121999.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:05 Heat of formation + Delta-G solvation = 62.491905 kcal Electronic energy + Delta-G solvation = -15754.758556 eV Core-core repulsion = 13174.588770 eV Total energy + Delta-G solvation = -2580.169787 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.92399 -36.75867 -35.29740 -32.57221 -31.70411 -31.00025 -29.29329 -26.41751 -24.97332 -23.30155 -22.34251 -20.58977 -20.06726 -19.07013 -16.62222 -16.33548 -15.98599 -15.20586 -14.82117 -14.31707 -14.19043 -14.01144 -13.68209 -13.25546 -12.60807 -12.46917 -12.14793 -11.88891 -11.71715 -11.47653 -11.20736 -10.73518 -10.49959 -10.19689 -10.03497 -9.74258 -9.43757 -9.06747 -8.73391 -8.49607 -7.30851 -7.15633 -5.98053 -3.94687 1.47896 1.51098 2.96843 3.31700 3.42267 3.44368 3.67961 4.34918 4.47346 4.55614 4.87619 5.12429 5.27133 5.32826 5.51035 5.62021 5.74398 5.86819 6.02159 6.12127 6.20001 6.32074 6.36224 6.37825 6.58756 6.61976 6.73676 6.87501 6.97033 7.13607 7.21730 7.80157 8.01670 8.30462 8.47034 8.78213 9.13026 9.65392 11.15599 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.041785 B = 0.004417 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.933875 B = 6337.247944 C = 6534.235029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.183 3.817 3 H 0.032 0.968 4 C -0.496 4.496 5 H 0.081 0.919 6 C 0.066 3.934 7 N -0.903 5.903 8 Si 0.886 3.114 9 H -0.280 1.280 10 H -0.297 1.297 11 H -0.270 1.270 12 N -0.673 5.673 13 C 0.068 3.932 14 C 0.045 3.955 15 N -0.562 5.562 16 C 0.224 3.776 17 C -0.254 4.254 18 C 0.115 3.885 19 N -0.622 5.622 20 H 0.410 0.590 21 C 0.102 3.898 22 C -0.190 4.190 23 H 0.044 0.956 24 H 0.027 0.973 25 H 0.054 0.946 26 H 0.262 0.738 27 H 0.330 0.670 28 H 0.023 0.977 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.146 0.854 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.571 5.191 -22.207 24.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.074 3.926 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.099 0.901 6 C -0.135 4.135 7 N -0.542 5.542 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.225 1.225 11 H -0.195 1.195 12 N -0.303 5.303 13 C -0.063 4.063 14 C -0.085 4.085 15 N -0.277 5.277 16 C 0.044 3.956 17 C -0.282 4.282 18 C -0.012 4.012 19 N -0.230 5.230 20 H 0.243 0.757 21 C -0.024 4.024 22 C -0.217 4.217 23 H 0.063 0.937 24 H 0.046 0.954 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.147 0.853 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.163 0.837 33 H 0.171 0.829 34 H 0.173 0.827 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.147 5.361 -21.766 23.851 hybrid contribution -0.601 0.674 0.349 0.968 sum 7.546 6.035 -21.417 23.496 Atomic orbital electron populations 1.22840 1.01501 1.00864 0.98851 1.19633 0.88597 0.95065 0.89345 0.95008 1.21011 1.30992 1.13637 0.87788 0.90067 1.24935 0.96026 0.96630 0.95867 1.69889 1.46138 1.40438 0.97776 0.86886 0.80616 0.84016 0.76780 1.20764 1.22465 1.19515 1.60591 1.57862 1.08969 1.02907 1.21828 0.98849 0.95719 0.89880 1.22132 1.00817 0.95116 0.90482 1.73039 1.23680 1.17592 1.13344 1.21516 0.89115 0.92449 0.92512 1.22696 0.92279 1.09103 1.04138 1.21372 0.99840 0.92914 0.87049 1.40837 1.08900 1.48439 1.24853 0.75665 1.21343 0.86074 0.97406 0.97540 1.21519 0.96522 1.05838 0.97791 0.93749 0.95404 0.92723 0.92773 0.85349 0.95844 0.92179 0.93040 0.91134 0.83701 0.82897 0.82656 0.84092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.23 8.64 37.15 0.32 -3.91 16 2 C 0.18 4.64 2.16 -68.87 -0.15 4.49 16 3 H 0.03 0.85 6.86 -51.93 -0.36 0.49 16 4 C -0.50 -14.64 9.42 -34.44 -0.32 -14.97 16 5 H 0.08 2.61 8.06 -52.48 -0.42 2.19 16 6 C 0.07 1.98 5.45 -17.82 -0.10 1.89 16 7 N -0.90 -28.48 13.96 55.43 0.77 -27.71 16 8 Si 0.89 22.92 24.37 -169.99 -4.14 18.77 16 9 H -0.28 -7.06 6.87 56.52 0.39 -6.67 16 10 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 11 H -0.27 -6.80 6.53 56.52 0.37 -6.43 16 12 N -0.67 -15.03 6.23 -107.95 -0.67 -15.71 16 13 C 0.07 1.36 5.81 -3.82 -0.02 1.33 16 14 C 0.04 0.79 6.51 -4.04 -0.03 0.77 16 15 N -0.56 -9.80 10.65 -55.79 -0.59 -10.39 16 16 C 0.22 3.25 6.97 -80.74 -0.56 2.68 16 17 C -0.25 -3.15 9.41 -37.36 -0.35 -3.50 16 18 C 0.11 0.92 11.13 -17.01 -0.19 0.73 16 19 N -0.62 -3.58 5.22 -13.14 -0.07 -3.64 16 20 H 0.41 0.78 8.88 -40.82 -0.36 0.41 16 21 C 0.10 0.69 11.13 -17.02 -0.19 0.50 16 22 C -0.19 -2.05 10.29 -37.36 -0.38 -2.44 16 23 H 0.04 1.07 3.27 -51.93 -0.17 0.90 16 24 H 0.03 0.57 7.45 -51.93 -0.39 0.19 16 25 H 0.05 1.22 8.13 -51.93 -0.42 0.80 16 26 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 27 H 0.33 6.91 8.47 -39.29 -0.33 6.57 16 28 H 0.02 0.48 7.44 -51.93 -0.39 0.10 16 29 H 0.06 1.27 8.06 -51.93 -0.42 0.86 16 30 H 0.05 0.89 5.33 -51.93 -0.28 0.61 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.15 1.94 6.03 -52.49 -0.32 1.62 16 33 H 0.15 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.16 0.42 8.06 -52.48 -0.42 0.00 16 35 H 0.14 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 286.45 15.07 4.32 4.32 Total: -1.00 -35.76 286.45 -7.09 -42.85 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -4.72 Total: 3.93 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -1.98 Total: -12.42 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.56 Total: -57.45 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.14 Total: 18.77 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -35.76 -7.09 -42.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380121999.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.339 kcal (2) G-P(sol) polarization free energy of solvation -35.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds