Wall clock time and date at job start Mon Mar 30 2020 04:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47269 * 2 1 4 4 C 1.50702 * 109.47140 * 240.00743 * 2 1 3 5 5 H 1.08003 * 120.00297 * 239.99949 * 4 2 1 6 6 C 1.37881 * 120.00159 * 59.99239 * 4 2 1 7 7 N 1.31515 * 119.99686 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00059 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47077 * 180.02562 * 8 6 4 10 10 H 1.48492 * 109.47370 * 300.00355 * 8 6 4 11 11 H 1.48498 * 109.46702 * 60.00547 * 8 6 4 12 12 N 1.46898 * 109.47558 * 120.00519 * 2 1 3 13 13 C 1.46895 * 111.00019 * 275.00101 * 12 2 1 14 14 C 1.53004 * 109.47418 * 179.97438 * 13 12 2 15 15 N 1.46492 * 109.47455 * 179.97438 * 14 13 12 16 16 C 1.32192 * 119.99936 * 115.91527 * 15 14 13 17 17 C 1.46859 * 121.21173 * 354.01633 * 16 15 14 18 18 C 1.34668 * 118.53718 * 179.76076 * 17 16 15 19 19 N 1.35897 * 121.27287 * 0.53454 * 18 17 16 20 20 H 0.97002 * 118.60297 * 179.73450 * 19 18 17 21 21 C 1.35908 * 122.80172 * 359.71261 * 19 18 17 22 22 C 1.34666 * 121.27317 * 0.02562 * 21 19 18 23 23 H 1.09000 * 109.46581 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46713 * 299.99225 * 1 2 3 25 25 H 1.08999 * 109.47249 * 59.99605 * 1 2 3 26 26 H 0.97001 * 119.99678 * 179.97438 * 7 6 4 27 27 H 1.00898 * 110.99768 * 38.95522 * 12 2 1 28 28 H 1.09005 * 109.47170 * 299.99589 * 13 12 2 29 29 H 1.09001 * 109.47714 * 59.99730 * 13 12 2 30 30 H 1.08996 * 109.46940 * 300.00105 * 14 13 12 31 31 H 1.09007 * 109.46714 * 59.99717 * 14 13 12 32 32 H 1.08006 * 120.73355 * 0.02562 * 17 16 15 33 33 H 1.07999 * 119.36238 * 180.24942 * 18 17 16 34 34 H 1.08005 * 119.36549 * 180.02562 * 21 19 18 35 35 H 1.08004 * 120.72929 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9433 0.8304 -2.6033 8 14 2.3224 -1.1191 -4.0081 9 1 1.8277 -0.4188 -5.2205 10 1 3.8073 -1.1185 -4.0080 11 1 1.8280 -2.5194 -4.0084 12 7 2.0198 -0.6926 1.1993 13 6 2.0826 0.2224 2.3468 14 6 2.5953 -0.5335 3.5744 15 7 2.6585 0.3791 4.7186 16 6 1.8899 0.1705 5.7737 17 6 0.8721 -0.8882 5.7764 18 6 0.1221 -1.0568 6.8821 19 7 0.2864 -0.2641 7.9736 20 1 -0.2776 -0.4171 8.7479 21 6 1.2076 0.7337 8.0269 22 6 2.0183 0.9932 6.9834 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 0.7092 1.1620 -3.4843 27 1 1.4497 -1.4980 1.4098 28 1 2.7590 1.0460 2.1182 29 1 1.0872 0.6161 2.5526 30 1 1.9186 -1.3568 3.8028 31 1 3.5906 -0.9275 3.3689 32 1 0.7311 -1.5205 4.9122 33 1 -0.6276 -1.8340 6.9001 34 1 1.2911 1.3301 8.9235 35 1 2.7476 1.7881 7.0355 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380122002.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:07 Heat of formation + Delta-G solvation = 54.174062 kcal Electronic energy + Delta-G solvation = -15708.161616 eV Core-core repulsion = 13127.631141 eV Total energy + Delta-G solvation = -2580.530475 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.91507 -36.58743 -35.14216 -32.60649 -31.68585 -30.74686 -28.75751 -26.06343 -25.03096 -23.28694 -22.25118 -20.50727 -20.05740 -19.06483 -16.39806 -16.17079 -15.87326 -15.08425 -14.60798 -14.60297 -14.20166 -13.96394 -13.22226 -13.05054 -12.43206 -12.14221 -12.09256 -11.72378 -11.45219 -10.94627 -10.86689 -10.70896 -10.40143 -10.23816 -10.04040 -9.75650 -9.73012 -8.92114 -8.70457 -8.27674 -7.15517 -7.09173 -5.89788 -3.92926 1.50379 1.51196 2.97150 3.40475 3.43648 3.47636 3.69936 4.37862 4.50670 4.55854 4.92160 5.13763 5.28069 5.41244 5.59195 5.70928 5.75283 6.03374 6.05307 6.17811 6.21340 6.55793 6.69267 6.74507 6.80480 6.92989 6.97209 7.14497 7.20036 7.49622 7.81895 7.97820 8.36623 8.37825 8.66212 8.73301 9.14106 9.71892 11.17349 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.059281 B = 0.003964 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.215592 B = 7061.328614 C = 7150.361252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.211 3.789 3 H 0.033 0.967 4 C -0.494 4.494 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.289 1.289 10 H -0.277 1.277 11 H -0.278 1.278 12 N -0.684 5.684 13 C 0.071 3.929 14 C 0.045 3.955 15 N -0.553 5.553 16 C 0.218 3.782 17 C -0.256 4.256 18 C 0.115 3.885 19 N -0.623 5.623 20 H 0.410 0.590 21 C 0.099 3.901 22 C -0.186 4.186 23 H 0.026 0.974 24 H 0.004 0.996 25 H 0.088 0.912 26 H 0.259 0.741 27 H 0.321 0.679 28 H 0.069 0.931 29 H 0.012 0.988 30 H 0.037 0.963 31 H 0.082 0.918 32 H 0.141 0.859 33 H 0.152 0.848 34 H 0.156 0.844 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.901 -2.474 23.128 23.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.103 3.897 3 H 0.051 0.949 4 C -0.533 4.533 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.215 1.215 10 H -0.203 1.203 11 H -0.204 1.204 12 N -0.314 5.314 13 C -0.059 4.059 14 C -0.085 4.085 15 N -0.268 5.268 16 C 0.038 3.962 17 C -0.284 4.284 18 C -0.011 4.011 19 N -0.231 5.231 20 H 0.243 0.757 21 C -0.026 4.026 22 C -0.212 4.212 23 H 0.046 0.954 24 H 0.023 0.977 25 H 0.107 0.893 26 H 0.069 0.931 27 H 0.137 0.863 28 H 0.087 0.913 29 H 0.030 0.970 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.158 0.842 33 H 0.169 0.831 34 H 0.173 0.827 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.528 -1.694 22.244 22.451 hybrid contribution -1.573 -1.041 -0.456 1.941 sum -4.101 -2.735 21.788 22.339 Atomic orbital electron populations 1.22416 1.00820 0.99032 1.00396 1.19166 0.89528 0.94498 0.86477 0.94880 1.21151 1.30086 1.12387 0.89649 0.91987 1.24965 0.95408 0.95245 0.99021 1.69886 1.37442 1.23221 1.23337 0.86552 0.79211 0.79528 0.82022 1.21503 1.20276 1.20413 1.60757 1.57896 1.09113 1.03593 1.21786 0.98047 0.96090 0.89986 1.22207 1.01274 0.94079 0.90897 1.73042 1.25351 1.27114 1.01264 1.21504 0.90836 0.91104 0.92798 1.22624 1.01983 1.04544 0.99247 1.21326 0.98705 0.94115 0.86993 1.40807 1.35358 1.30637 1.16341 0.75703 1.21335 0.90607 0.90934 0.99761 1.21540 1.03807 1.03989 0.91910 0.95442 0.97745 0.89289 0.93088 0.86298 0.91297 0.96990 0.94510 0.89947 0.84172 0.83058 0.82650 0.84004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.30 8.94 37.16 0.33 -3.97 16 2 C 0.21 5.73 2.57 -68.86 -0.18 5.55 16 3 H 0.03 0.99 7.80 -51.93 -0.40 0.59 16 4 C -0.49 -14.42 8.84 -34.44 -0.30 -14.73 16 5 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 6 C 0.05 1.56 5.30 -17.82 -0.09 1.46 16 7 N -0.90 -26.81 11.32 55.43 0.63 -26.18 16 8 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 N -0.68 -16.05 6.23 -107.95 -0.67 -16.72 16 13 C 0.07 1.53 5.81 -3.83 -0.02 1.50 16 14 C 0.05 0.85 6.51 -4.04 -0.03 0.82 16 15 N -0.55 -10.07 10.65 -55.80 -0.59 -10.66 16 16 C 0.22 3.24 6.97 -80.74 -0.56 2.68 16 17 C -0.26 -3.15 9.41 -37.36 -0.35 -3.50 16 18 C 0.11 0.91 11.13 -17.02 -0.19 0.72 16 19 N -0.62 -3.61 5.22 -13.14 -0.07 -3.68 16 20 H 0.41 0.78 8.88 -40.82 -0.36 0.42 16 21 C 0.10 0.69 11.13 -17.01 -0.19 0.50 16 22 C -0.19 -2.08 10.29 -37.36 -0.38 -2.46 16 23 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16 24 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 25 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.32 7.03 8.47 -39.29 -0.33 6.70 16 28 H 0.07 1.59 8.06 -51.93 -0.42 1.17 16 29 H 0.01 0.26 7.44 -51.93 -0.39 -0.12 16 30 H 0.04 0.62 5.33 -51.93 -0.28 0.35 16 31 H 0.08 1.58 8.14 -51.92 -0.42 1.16 16 32 H 0.14 1.80 6.03 -52.48 -0.32 1.48 16 33 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.16 0.46 8.06 -52.48 -0.42 0.03 16 35 H 0.14 1.49 8.06 -52.48 -0.42 1.06 16 LS Contribution 293.28 15.07 4.42 4.42 Total: -1.00 -34.68 293.28 -8.14 -42.82 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -4.86 Total: 4.17 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -1.97 Total: -11.42 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.71 Total: -57.25 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -34.68 -8.14 -42.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380122002.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.993 kcal (2) G-P(sol) polarization free energy of solvation -34.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds