Wall clock time and date at job start Mon Mar 30 2020 04:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46923 * 2 1 4 4 C 1.50703 * 109.47090 * 120.00134 * 2 1 3 5 5 H 1.07991 * 120.00070 * 119.99704 * 4 2 1 6 6 C 1.37880 * 119.99885 * 299.99788 * 4 2 1 7 7 N 1.31515 * 119.99825 * 179.97438 * 6 4 2 8 8 Si 1.86806 * 120.00182 * 0.02562 * 6 4 2 9 9 H 1.48492 * 109.47093 * 89.99582 * 8 6 4 10 10 H 1.48502 * 109.47060 * 210.00042 * 8 6 4 11 11 H 1.48505 * 109.46907 * 329.99715 * 8 6 4 12 12 N 1.46899 * 109.46879 * 240.00157 * 2 1 3 13 13 C 1.46893 * 110.99894 * 85.00195 * 12 2 1 14 14 H 1.08999 * 109.71507 * 324.39445 * 13 12 2 15 15 C 1.53368 * 109.72288 * 203.75511 * 13 12 2 16 16 C 1.53025 * 109.75613 * 189.67923 * 15 13 12 17 17 C 1.53387 * 109.72015 * 71.71988 * 16 15 13 18 18 C 1.50881 * 108.19544 * 309.46665 * 17 16 15 19 19 C 1.34568 * 128.32562 * 196.57200 * 18 17 16 20 20 N 1.35199 * 107.61609 * 179.85711 * 19 18 17 21 21 H 0.97005 * 126.00025 * 180.02562 * 20 19 18 22 22 N 1.40313 * 107.99385 * 0.03632 * 20 19 18 23 23 C 1.30125 * 108.12380 * 0.04323 * 22 20 19 24 24 H 1.08991 * 109.47152 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46939 * 300.00061 * 1 2 3 26 26 H 1.09000 * 109.47045 * 59.99409 * 1 2 3 27 27 H 0.96998 * 119.99587 * 180.02562 * 7 6 4 28 28 H 1.00899 * 110.99823 * 321.04560 * 12 2 1 29 29 H 1.09003 * 109.42679 * 69.59155 * 15 13 12 30 30 H 1.08997 * 109.42357 * 309.76454 * 15 13 12 31 31 H 1.09004 * 109.42500 * 311.64401 * 16 15 13 32 32 H 1.08997 * 109.43230 * 191.80364 * 16 15 13 33 33 H 1.09002 * 109.71575 * 69.14334 * 17 16 15 34 34 H 1.08997 * 109.71621 * 189.74826 * 17 16 15 35 35 H 1.08001 * 126.19416 * 359.82988 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 2.1373 -0.8597 3.5566 8 14 0.6248 1.2791 2.6542 9 1 -0.8027 0.8727 2.6998 10 1 0.9760 1.9951 3.9069 11 1 0.8471 2.1765 1.4921 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2226 -2.3468 14 1 1.2529 0.9282 -2.3002 15 6 2.0084 -0.5785 -3.6525 16 6 2.3139 0.3376 -4.8395 17 6 3.8057 0.6941 -4.8477 18 6 4.1802 1.1857 -3.4713 19 6 5.2729 1.8784 -3.1012 20 7 5.1842 2.1026 -1.7709 21 1 5.8316 2.5800 -1.2287 22 7 3.9913 1.5232 -1.3123 23 6 3.3916 0.9738 -2.3280 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.9027 -0.5285 4.4375 28 1 1.4495 -1.4979 -1.4100 29 1 1.0080 -0.9964 -3.7652 30 1 2.7374 -1.3883 -3.6227 31 1 1.7235 1.2500 -4.7546 32 1 2.0581 -0.1738 -5.7675 33 1 4.3937 -0.1897 -5.0952 34 1 3.9926 1.4775 -5.5821 35 1 6.0758 2.1972 -3.7494 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380152304.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:06 Heat of formation + Delta-G solvation = 75.326893 kcal Electronic energy + Delta-G solvation = -16998.460990 eV Core-core repulsion = 14418.847770 eV Total energy + Delta-G solvation = -2579.613220 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.03771 -37.18471 -35.11411 -32.44168 -31.00884 -30.19085 -28.85008 -26.57275 -24.92850 -23.50560 -21.70383 -20.45547 -19.86519 -18.39067 -17.19444 -16.53677 -15.32459 -14.96023 -14.67312 -13.98160 -13.84630 -13.58049 -13.23588 -12.72653 -12.46852 -12.38039 -12.00659 -11.82563 -11.73195 -11.14324 -10.91303 -10.69993 -10.51214 -10.30289 -10.01607 -9.82491 -9.37174 -8.98267 -8.96003 -8.43036 -8.08799 -7.37001 -5.91553 -3.86318 2.32782 3.17857 3.28448 3.33907 3.45748 3.48303 4.52912 4.78427 4.91525 4.99054 5.09785 5.35499 5.40547 5.49925 5.62000 5.72655 5.78933 5.89381 6.02850 6.06901 6.15048 6.28472 6.35413 6.38153 6.47366 6.52701 6.62424 6.91277 7.03515 7.26285 7.68587 7.88160 8.01126 8.22570 8.46089 8.83737 9.19968 9.72362 11.22544 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.030629 B = 0.008135 C = 0.007168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.960917 B = 3440.922150 C = 3905.534868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.182 3.818 3 H 0.046 0.954 4 C -0.484 4.484 5 H 0.079 0.921 6 C 0.066 3.934 7 N -0.906 5.906 8 Si 0.884 3.116 9 H -0.283 1.283 10 H -0.299 1.299 11 H -0.269 1.269 12 N -0.661 5.661 13 C 0.162 3.838 14 H 0.052 0.948 15 C -0.117 4.117 16 C -0.114 4.114 17 C -0.036 4.036 18 C -0.241 4.241 19 C 0.046 3.954 20 N -0.493 5.493 21 H 0.435 0.565 22 N -0.245 5.245 23 C 0.100 3.900 24 H 0.053 0.947 25 H 0.044 0.956 26 H 0.025 0.975 27 H 0.261 0.739 28 H 0.334 0.666 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.435 5.174 -17.633 18.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.074 3.926 3 H 0.064 0.936 4 C -0.523 4.523 5 H 0.097 0.903 6 C -0.134 4.134 7 N -0.546 5.546 8 Si 0.715 3.285 9 H -0.210 1.210 10 H -0.226 1.226 11 H -0.194 1.194 12 N -0.292 5.292 13 C 0.050 3.950 14 H 0.069 0.931 15 C -0.155 4.155 16 C -0.152 4.152 17 C -0.074 4.074 18 C -0.254 4.254 19 C -0.100 4.100 20 N -0.201 5.201 21 H 0.278 0.722 22 N -0.066 5.066 23 C -0.071 4.071 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.153 0.847 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.063 5.485 -16.015 17.203 hybrid contribution -1.032 1.097 -0.405 1.560 sum 2.031 6.583 -16.420 17.807 Atomic orbital electron populations 1.22899 1.01869 1.00771 0.98787 1.19720 0.87965 0.95935 0.89029 0.93615 1.20934 1.30423 1.13226 0.87725 0.90292 1.24900 0.96170 0.96467 0.95908 1.69891 1.46483 1.40528 0.97699 0.86921 0.80394 0.84364 0.76823 1.20997 1.22629 1.19382 1.60526 1.58120 1.08329 1.02208 1.19947 0.90111 0.93320 0.91629 0.93064 1.21727 1.02004 0.98629 0.93178 1.21522 0.96133 0.99702 0.97831 1.19926 0.95866 0.99752 0.91890 1.20058 0.97714 1.10559 0.97049 1.21901 0.99974 1.01592 0.86488 1.46568 1.20065 1.46923 1.06534 0.72246 1.77433 0.94178 1.13816 1.21148 1.22340 0.97425 0.97377 0.89937 0.92742 0.93709 0.95604 0.92947 0.84725 0.91533 0.90595 0.91998 0.91722 0.91590 0.91828 0.81525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.12 8.63 37.16 0.32 -3.80 16 2 C 0.18 4.52 1.90 -68.86 -0.13 4.39 16 3 H 0.05 1.23 5.99 -51.93 -0.31 0.92 16 4 C -0.48 -14.31 9.42 -34.44 -0.32 -14.64 16 5 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 6 C 0.07 1.98 5.45 -17.82 -0.10 1.89 16 7 N -0.91 -28.90 13.96 55.43 0.77 -28.13 16 8 Si 0.88 23.15 24.37 -169.99 -4.14 19.01 16 9 H -0.28 -7.14 6.87 56.52 0.39 -6.76 16 10 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 11 H -0.27 -6.89 6.53 56.52 0.37 -6.52 16 12 N -0.66 -14.06 6.03 -101.84 -0.61 -14.67 16 13 C 0.16 2.91 2.67 -68.56 -0.18 2.73 16 14 H 0.05 0.94 7.14 -51.93 -0.37 0.57 16 15 C -0.12 -1.58 5.16 -26.53 -0.14 -1.72 16 16 C -0.11 -1.27 5.87 -26.52 -0.16 -1.43 16 17 C -0.04 -0.41 6.28 -27.59 -0.17 -0.58 16 18 C -0.24 -3.62 5.89 -104.98 -0.62 -4.23 16 19 C 0.05 0.61 11.95 -17.37 -0.21 0.40 16 20 N -0.49 -7.66 7.37 30.35 0.22 -7.44 16 21 H 0.43 5.30 8.96 -182.43 -1.64 3.66 16 22 N -0.25 -5.12 11.75 33.75 0.40 -4.72 16 23 C 0.10 1.89 6.55 -82.35 -0.54 1.35 16 24 H 0.05 1.15 8.13 -51.93 -0.42 0.73 16 25 H 0.04 1.06 3.27 -51.93 -0.17 0.89 16 26 H 0.02 0.49 7.43 -51.93 -0.39 0.11 16 27 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 28 H 0.33 6.46 8.13 -39.29 -0.32 6.14 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 31 H 0.06 0.71 8.10 -51.93 -0.42 0.28 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.17 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 275.99 15.07 4.16 4.16 Total: -1.00 -34.95 275.99 -7.62 -42.57 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.17 Total: 4.86 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -2.25 Total: -15.65 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.78 Total: -54.96 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -4.14 Total: 19.01 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -34.95 -7.62 -42.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380152304.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.901 kcal (2) G-P(sol) polarization free energy of solvation -34.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds