Wall clock time and date at job start Mon Mar 30 2020 04:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46923 * 2 1 4 4 C 1.50703 * 109.47090 * 120.00134 * 2 1 3 5 5 H 1.07991 * 120.00070 * 119.99704 * 4 2 1 6 6 C 1.37880 * 119.99885 * 299.99788 * 4 2 1 7 7 N 1.31515 * 119.99825 * 179.97438 * 6 4 2 8 8 Si 1.86806 * 120.00182 * 0.02562 * 6 4 2 9 9 H 1.48492 * 109.47093 * 89.99582 * 8 6 4 10 10 H 1.48502 * 109.47060 * 210.00042 * 8 6 4 11 11 H 1.48505 * 109.46907 * 329.99715 * 8 6 4 12 12 N 1.46899 * 109.46879 * 240.00157 * 2 1 3 13 13 C 1.46893 * 110.99894 * 85.00195 * 12 2 1 14 14 H 1.08999 * 109.71507 * 324.39445 * 13 12 2 15 15 C 1.53368 * 109.72288 * 203.75511 * 13 12 2 16 16 C 1.53025 * 109.75613 * 189.67923 * 15 13 12 17 17 C 1.53387 * 109.72015 * 71.71988 * 16 15 13 18 18 C 1.50881 * 108.19544 * 309.46665 * 17 16 15 19 19 C 1.34568 * 128.32562 * 196.57200 * 18 17 16 20 20 N 1.35199 * 107.61609 * 179.85711 * 19 18 17 21 21 H 0.97005 * 126.00025 * 180.02562 * 20 19 18 22 22 N 1.40313 * 107.99385 * 0.03632 * 20 19 18 23 23 C 1.30125 * 108.12380 * 0.04323 * 22 20 19 24 24 H 1.08991 * 109.47152 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46939 * 300.00061 * 1 2 3 26 26 H 1.09000 * 109.47045 * 59.99409 * 1 2 3 27 27 H 0.96998 * 119.99587 * 180.02562 * 7 6 4 28 28 H 1.00899 * 110.99823 * 321.04560 * 12 2 1 29 29 H 1.09003 * 109.42679 * 69.59155 * 15 13 12 30 30 H 1.08997 * 109.42357 * 309.76454 * 15 13 12 31 31 H 1.09004 * 109.42500 * 311.64401 * 16 15 13 32 32 H 1.08997 * 109.43230 * 191.80364 * 16 15 13 33 33 H 1.09002 * 109.71575 * 69.14334 * 17 16 15 34 34 H 1.08997 * 109.71621 * 189.74826 * 17 16 15 35 35 H 1.08001 * 126.19416 * 359.82988 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 2.1373 -0.8597 3.5566 8 14 0.6248 1.2791 2.6542 9 1 -0.8027 0.8727 2.6998 10 1 0.9760 1.9951 3.9069 11 1 0.8471 2.1765 1.4921 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2226 -2.3468 14 1 1.2529 0.9282 -2.3002 15 6 2.0084 -0.5785 -3.6525 16 6 2.3139 0.3376 -4.8395 17 6 3.8057 0.6941 -4.8477 18 6 4.1802 1.1857 -3.4713 19 6 5.2729 1.8784 -3.1012 20 7 5.1842 2.1026 -1.7709 21 1 5.8316 2.5800 -1.2287 22 7 3.9913 1.5232 -1.3123 23 6 3.3916 0.9738 -2.3280 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.9027 -0.5285 4.4375 28 1 1.4495 -1.4979 -1.4100 29 1 1.0080 -0.9964 -3.7652 30 1 2.7374 -1.3883 -3.6227 31 1 1.7235 1.2500 -4.7546 32 1 2.0581 -0.1738 -5.7675 33 1 4.3937 -0.1897 -5.0952 34 1 3.9926 1.4775 -5.5821 35 1 6.0758 2.1972 -3.7494 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380152304.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:05 Heat of formation + Delta-G solvation = 47.813089 kcal Electronic energy + Delta-G solvation = -16999.654078 eV Core-core repulsion = 14418.847770 eV Total energy + Delta-G solvation = -2580.806308 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.22476 -38.62759 -36.54843 -34.40391 -32.57714 -31.47302 -30.22129 -27.89483 -27.06920 -24.72770 -22.92155 -21.91769 -21.39048 -19.62243 -18.69635 -18.31199 -16.98292 -16.62930 -15.95012 -15.48317 -15.24270 -14.89101 -14.54102 -14.44107 -14.10441 -13.80082 -13.55431 -13.21580 -13.06530 -12.73715 -12.64254 -12.05369 -11.91241 -11.68265 -11.53408 -11.41791 -11.30295 -10.88406 -10.70721 -10.27984 -9.20260 -9.03611 -8.26143 -6.25417 1.19007 1.24001 1.32257 1.41846 1.94546 2.18816 2.31783 3.09017 3.52199 3.75350 3.91210 4.11575 4.29657 4.45165 4.49338 4.52389 4.60390 4.62158 4.71092 4.75446 4.96488 5.00661 5.04135 5.14185 5.25292 5.34512 5.43666 5.47043 5.55986 5.72577 5.87563 6.05927 6.66055 6.70856 6.78983 6.82452 7.01239 7.38225 8.92005 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.030629 B = 0.008135 C = 0.007168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.960917 B = 3440.922150 C = 3905.534868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.193 3.807 3 H 0.026 0.974 4 C -0.489 4.489 5 H 0.030 0.970 6 C 0.008 3.992 7 N -0.954 5.954 8 Si 0.951 3.049 9 H -0.262 1.262 10 H -0.299 1.299 11 H -0.262 1.262 12 N -0.676 5.676 13 C 0.159 3.841 14 H 0.045 0.955 15 C -0.109 4.109 16 C -0.109 4.109 17 C -0.033 4.033 18 C -0.257 4.257 19 C 0.063 3.937 20 N -0.492 5.492 21 H 0.444 0.556 22 N -0.322 5.322 23 C 0.075 3.925 24 H 0.061 0.939 25 H 0.033 0.967 26 H 0.059 0.941 27 H 0.263 0.737 28 H 0.342 0.658 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.864 6.440 -20.749 21.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.083 3.917 3 H 0.044 0.956 4 C -0.528 4.528 5 H 0.049 0.951 6 C -0.188 4.188 7 N -0.596 5.596 8 Si 0.779 3.221 9 H -0.188 1.188 10 H -0.227 1.227 11 H -0.186 1.186 12 N -0.307 5.307 13 C 0.047 3.953 14 H 0.063 0.937 15 C -0.148 4.148 16 C -0.147 4.147 17 C -0.071 4.071 18 C -0.269 4.269 19 C -0.082 4.082 20 N -0.202 5.202 21 H 0.289 0.711 22 N -0.144 5.144 23 C -0.094 4.094 24 H 0.080 0.920 25 H 0.051 0.949 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.161 0.839 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 2.483 6.742 -19.162 20.465 hybrid contribution -0.699 0.660 0.517 1.092 sum 1.784 7.402 -18.645 20.140 Atomic orbital electron populations 1.22746 0.99520 1.01652 0.99791 1.19360 0.89554 0.94190 0.88558 0.95606 1.21221 1.29406 1.11881 0.90259 0.95132 1.25740 0.97821 0.99808 0.95444 1.70050 1.48499 1.42686 0.98376 0.85826 0.79326 0.80219 0.76694 1.18775 1.22703 1.18649 1.60310 1.58362 1.09312 1.02754 1.20145 0.89975 0.93050 0.92152 0.93701 1.21713 1.02915 0.98295 0.91852 1.21533 0.96130 0.99311 0.97768 1.20041 0.95955 1.00875 0.90239 1.20565 0.97567 1.11007 0.97794 1.22723 1.00415 0.99440 0.85643 1.46577 1.19122 1.46640 1.07826 0.71075 1.77295 0.96891 1.16517 1.23668 1.22697 0.98067 0.97440 0.91225 0.91996 0.94865 0.92214 0.92793 0.83858 0.89774 0.91365 0.92189 0.88607 0.90693 0.89118 0.76452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.72 8.63 71.98 0.62 -7.10 16 2 C 0.19 9.68 1.90 44.17 0.08 9.76 16 3 H 0.03 1.42 5.99 -2.39 -0.01 1.40 16 4 C -0.49 -30.04 9.42 25.60 0.24 -29.80 16 5 H 0.03 2.11 8.06 -2.92 -0.02 2.08 16 6 C 0.01 0.47 5.45 84.66 0.46 0.93 16 7 N -0.95 -63.07 13.96 21.45 0.30 -62.77 16 8 Si 0.95 48.56 24.37 68.60 1.67 50.23 16 9 H -0.26 -12.41 6.87 99.48 0.68 -11.73 16 10 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 11 H -0.26 -12.95 6.53 99.48 0.65 -12.30 16 12 N -0.68 -29.07 6.03 -476.12 -2.87 -31.95 16 13 C 0.16 5.57 2.67 44.37 0.12 5.69 16 14 H 0.05 1.61 7.14 -2.39 -0.02 1.59 16 15 C -0.11 -2.71 5.16 30.73 0.16 -2.55 16 16 C -0.11 -2.04 5.87 30.73 0.18 -1.86 16 17 C -0.03 -0.62 6.28 30.03 0.19 -0.43 16 18 C -0.26 -7.11 5.89 -20.10 -0.12 -7.23 16 19 C 0.06 1.50 11.95 83.33 1.00 2.49 16 20 N -0.49 -14.95 7.37 -57.89 -0.43 -15.37 16 21 H 0.44 10.65 8.96 -213.18 -1.91 8.74 16 22 N -0.32 -13.63 11.75 -47.14 -0.55 -14.19 16 23 C 0.08 2.81 6.55 43.44 0.28 3.09 16 24 H 0.06 2.55 8.13 -2.39 -0.02 2.53 16 25 H 0.03 1.50 3.27 -2.38 -0.01 1.50 16 26 H 0.06 2.16 7.43 -2.39 -0.02 2.14 16 27 H 0.26 16.28 8.31 -92.71 -0.77 15.50 16 28 H 0.34 13.26 8.13 -89.69 -0.73 12.53 16 29 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.07 1.79 8.10 -2.39 -0.02 1.77 16 31 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 32 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 34 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.22 2.68 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -80.20 275.99 -0.28 -80.48 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -1.61 Total: 20.56 kcal Atomic # 6 Polarization: -30.21 SS G_CDS: 3.22 Total: -26.99 kcal Atomic # 7 Polarization: -120.73 SS G_CDS: -3.55 Total: -124.28 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 1.67 Total: 50.23 kcal Total: -80.20 -0.28 -80.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380152304.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.296 kcal (2) G-P(sol) polarization free energy of solvation -80.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds