Wall clock time and date at job start Mon Mar 30 2020 03:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47067 * 2 1 4 4 N 1.46503 * 109.47348 * 180.02562 * 3 2 1 5 5 C 1.36935 * 120.00013 * 264.22177 * 4 3 2 6 6 H 1.08001 * 119.99609 * 188.19671 * 5 4 3 7 7 C 1.38812 * 119.99878 * 8.20279 * 5 4 3 8 8 N 1.31611 * 120.00394 * 25.72358 * 7 5 4 9 9 Si 1.86807 * 119.99777 * 205.72512 * 7 5 4 10 10 H 1.48503 * 109.46779 * 84.98422 * 9 7 5 11 11 H 1.48497 * 109.47114 * 204.98669 * 9 7 5 12 12 H 1.48505 * 109.46984 * 324.98810 * 9 7 5 13 13 C 1.46505 * 119.99816 * 84.21648 * 4 3 2 14 14 C 1.50697 * 109.47094 * 270.00176 * 13 4 3 15 15 N 1.32154 * 119.99457 * 90.00354 * 14 13 4 16 16 C 1.32131 * 119.99772 * 179.97438 * 15 14 13 17 17 C 1.38388 * 119.99793 * 0.02562 * 16 15 14 18 18 N 1.32127 * 119.99760 * 0.02562 * 17 16 15 19 19 C 1.32157 * 120.00122 * 359.72637 * 18 17 16 20 20 C 1.50692 * 120.00358 * 180.27661 * 19 18 17 21 21 H 1.09000 * 109.47244 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47109 * 299.99624 * 1 2 3 23 23 H 1.09000 * 109.47486 * 59.99834 * 1 2 3 24 24 H 1.08999 * 109.46913 * 239.99913 * 2 1 3 25 25 H 1.09000 * 109.47486 * 120.00166 * 2 1 3 26 26 H 1.08999 * 109.47325 * 60.00165 * 3 2 1 27 27 H 1.08999 * 109.47631 * 299.99850 * 3 2 1 28 28 H 0.97000 * 120.00567 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.46876 * 150.00214 * 13 4 3 30 30 H 1.08997 * 109.46833 * 30.00932 * 13 4 3 31 31 H 1.08000 * 119.99872 * 180.02562 * 16 15 14 32 32 H 1.08002 * 119.99993 * 180.02562 * 17 16 15 33 33 H 1.08999 * 109.47543 * 270.25010 * 20 19 18 34 34 H 1.09003 * 109.46885 * 30.25162 * 20 19 18 35 35 H 1.09004 * 109.47443 * 150.24686 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.5618 1.1790 6 1 5.2619 1.6950 1.1698 7 6 3.5072 1.5113 2.3864 8 7 2.3597 0.8719 2.4673 9 14 4.2170 2.3511 3.8967 10 1 3.8243 3.7832 3.8970 11 1 3.6929 1.6937 5.1207 12 1 5.6979 2.2438 3.8726 13 6 4.2369 1.3149 -1.2633 14 6 4.4880 -0.1425 -1.5533 15 7 3.6066 -0.8389 -2.2494 16 6 3.8269 -2.1166 -2.5041 17 6 4.9803 -2.7255 -2.0415 18 7 5.8610 -2.0293 -1.3447 19 6 5.6429 -0.7502 -1.0941 20 6 6.6502 0.0455 -0.3047 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 1.8823 0.8370 3.3110 29 1 5.1894 1.8392 -1.1857 30 1 3.6475 1.7498 -2.0704 31 1 3.1069 -2.6857 -3.0733 32 1 5.1606 -3.7697 -2.2500 33 1 6.4128 -0.0192 0.7572 34 1 7.6481 -0.3568 -0.4791 35 1 6.6184 1.0881 -0.6212 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687300108.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:05 Heat of formation + Delta-G solvation = 53.452847 kcal Electronic energy + Delta-G solvation = -17322.804341 eV Core-core repulsion = 14742.242592 eV Total energy + Delta-G solvation = -2580.561750 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.91203 -38.12325 -35.29457 -34.64720 -33.65310 -32.32783 -29.16841 -27.96219 -27.27390 -24.61905 -23.75518 -22.63469 -21.72611 -18.94781 -18.24071 -17.40194 -16.90474 -16.32392 -15.92456 -15.46061 -15.25472 -14.76037 -14.53577 -13.77351 -13.76415 -13.56993 -13.44757 -13.28282 -12.79193 -12.53913 -12.45472 -12.34188 -12.19911 -11.99916 -11.82686 -11.74178 -11.42794 -11.00705 -10.28814 -9.86730 -9.78356 -8.82883 -7.76789 -5.07996 0.03284 0.36373 1.50646 1.54853 1.59435 2.55127 2.88271 3.28385 3.37743 3.46732 3.77662 3.81259 4.05783 4.31354 4.49295 4.57124 4.61157 4.69717 4.70457 4.77703 4.88017 4.96697 5.01168 5.06642 5.21479 5.30357 5.44145 5.54159 5.68195 5.70588 5.92526 6.19708 6.36354 6.54543 7.06078 7.22809 7.91212 8.34109 9.23939 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.022235 B = 0.010769 C = 0.008336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.949732 B = 2599.383866 C = 3358.071003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.123 4.123 3 C 0.180 3.820 4 N -0.592 5.592 5 C -0.252 4.252 6 H 0.090 0.910 7 C -0.050 4.050 8 N -0.911 5.911 9 Si 0.950 3.050 10 H -0.290 1.290 11 H -0.307 1.307 12 H -0.269 1.269 13 C 0.190 3.810 14 C 0.063 3.937 15 N -0.451 5.451 16 C 0.032 3.968 17 C 0.032 3.968 18 N -0.467 5.467 19 C 0.071 3.929 20 C -0.091 4.091 21 H 0.043 0.957 22 H 0.037 0.963 23 H 0.051 0.949 24 H 0.042 0.958 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.017 0.983 28 H 0.243 0.757 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.194 0.806 32 H 0.198 0.802 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.315 -3.173 -8.709 9.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 C 0.055 3.945 4 N -0.311 5.311 5 C -0.381 4.381 6 H 0.108 0.892 7 C -0.246 4.246 8 N -0.557 5.557 9 Si 0.780 3.220 10 H -0.218 1.218 11 H -0.234 1.234 12 H -0.194 1.194 13 C 0.062 3.938 14 C -0.080 4.080 15 N -0.167 5.167 16 C -0.128 4.128 17 C -0.129 4.129 18 N -0.183 5.183 19 C -0.069 4.069 20 C -0.149 4.149 21 H 0.062 0.938 22 H 0.056 0.944 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.035 0.965 28 H 0.052 0.948 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.211 0.789 32 H 0.215 0.785 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.225 -3.117 -8.544 9.650 hybrid contribution -0.080 -0.090 1.184 1.190 sum 3.145 -3.207 -7.360 8.622 Atomic orbital electron populations 1.21505 0.96651 1.00037 1.00228 1.21959 0.94632 0.99790 0.99913 1.20756 0.81764 0.94802 0.97214 1.44606 1.02177 1.82467 1.01898 1.19709 0.93131 1.41426 0.83876 0.89187 1.25381 0.98410 1.01147 0.99635 1.70364 1.18481 1.42250 1.24655 0.85523 0.78325 0.78525 0.79583 1.21776 1.23446 1.19412 1.20033 0.97872 0.87219 0.88643 1.23549 0.90012 1.01657 0.92760 1.68268 1.28833 1.08272 1.11327 1.24242 0.98033 0.91740 0.98829 1.24169 0.91595 1.02317 0.94794 1.68221 1.31789 1.06808 1.11518 1.22249 0.96361 0.91490 0.96797 1.20731 0.96254 0.99087 0.98786 0.93808 0.94389 0.93038 0.93974 0.93258 0.92365 0.96478 0.94788 0.89516 0.91678 0.78895 0.78515 0.91260 0.89939 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.00 9.91 71.98 0.71 -4.29 16 2 C -0.12 -5.76 5.61 30.59 0.17 -5.59 16 3 C 0.18 8.61 4.92 86.38 0.42 9.03 16 4 N -0.59 -27.90 2.52 -706.34 -1.78 -29.68 16 5 C -0.25 -12.67 9.06 84.03 0.76 -11.91 16 6 H 0.09 4.26 6.31 -2.91 -0.02 4.24 16 7 C -0.05 -2.66 4.88 84.86 0.41 -2.25 16 8 N -0.91 -50.86 8.61 21.65 0.19 -50.67 16 9 Si 0.95 43.46 29.63 68.60 2.03 45.49 16 10 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 11 H -0.31 -14.57 7.11 99.48 0.71 -13.87 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 13 C 0.19 7.48 5.62 85.63 0.48 7.96 16 14 C 0.06 2.46 5.97 42.53 0.25 2.71 16 15 N -0.45 -16.81 8.34 -183.29 -1.53 -18.34 16 16 C 0.03 0.95 11.23 84.68 0.95 1.90 16 17 C 0.03 0.93 11.23 84.68 0.95 1.88 16 18 N -0.47 -16.61 10.42 -183.30 -1.91 -18.52 16 19 C 0.07 2.68 6.78 42.53 0.29 2.97 16 20 C -0.09 -3.02 8.63 71.23 0.61 -2.41 16 21 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.04 1.92 5.62 -2.39 -0.01 1.91 16 25 H 0.05 2.72 6.30 -2.39 -0.02 2.71 16 26 H 0.06 3.13 5.88 -2.39 -0.01 3.11 16 27 H 0.02 0.76 7.97 -2.39 -0.02 0.74 16 28 H 0.24 13.49 8.31 -92.71 -0.77 12.72 16 29 H 0.09 3.05 5.83 -2.39 -0.01 3.04 16 30 H 0.06 2.44 7.95 -2.39 -0.02 2.42 16 31 H 0.19 4.13 8.06 -2.91 -0.02 4.11 16 32 H 0.20 3.91 8.06 -2.91 -0.02 3.89 16 33 H 0.07 2.61 7.20 -2.39 -0.02 2.59 16 34 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.09 2.71 5.85 -2.39 -0.01 2.70 16 Total: -1.00 -61.82 280.58 4.10 -57.72 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 1.08 Total: 14.01 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 6.02 Total: 0.00 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -5.04 Total: -117.22 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -61.82 4.10 -57.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687300108.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.168 kcal (2) G-P(sol) polarization free energy of solvation -61.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds