Wall clock time and date at job start Mon Mar 30 2020 04:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.47168 * 2 1 4 4 C 1.52997 * 109.47165 * 240.00228 * 2 1 3 5 5 C 1.50696 * 109.47416 * 175.00019 * 4 2 1 6 6 H 1.08000 * 120.00221 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00250 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00085 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99888 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47405 * 90.00051 * 9 7 5 11 11 H 1.48508 * 109.47268 * 210.00311 * 9 7 5 12 12 H 1.48504 * 109.47230 * 329.99684 * 9 7 5 13 13 N 1.46903 * 109.47447 * 119.99866 * 2 1 3 14 14 C 1.46897 * 110.99938 * 317.15220 * 13 2 1 15 15 C 1.39498 * 111.00072 * 193.19178 * 13 2 1 16 16 C 1.39225 * 120.88244 * 67.90936 * 15 13 2 17 17 C 1.38051 * 119.14461 * 180.02562 * 16 15 13 18 18 N 1.31937 * 120.97724 * 0.02562 * 17 16 15 19 19 C 1.32017 * 121.94381 * 359.69485 * 18 17 16 20 20 C 1.38483 * 120.74101 * 0.59318 * 19 18 17 21 21 N 1.40062 * 120.52472 * 179.70290 * 20 19 18 22 22 H 1.08998 * 109.47697 * 66.73335 * 1 2 3 23 23 H 1.09000 * 109.47244 * 186.73307 * 1 2 3 24 24 H 1.09003 * 109.47155 * 306.73193 * 1 2 3 25 25 H 1.09004 * 109.47322 * 294.99783 * 4 2 1 26 26 H 1.09003 * 109.47228 * 54.99932 * 4 2 1 27 27 H 0.97006 * 120.00264 * 180.02562 * 8 7 5 28 28 H 1.09011 * 109.46711 * 296.03985 * 14 13 2 29 29 H 1.08994 * 109.47441 * 56.03883 * 14 13 2 30 30 H 1.09002 * 109.46875 * 176.04573 * 14 13 2 31 31 H 1.08000 * 120.42456 * 0.02562 * 16 15 13 32 32 H 1.08002 * 119.50905 * 179.97438 * 17 16 15 33 33 H 1.08003 * 119.63035 * 180.31984 * 19 18 17 34 34 H 0.96995 * 120.00018 * 179.72041 * 21 20 19 35 35 H 0.97006 * 119.99543 * 359.44753 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5418 -0.6149 -1.3128 6 1 4.0789 -0.0855 -0.5397 7 6 4.2302 -1.1926 -2.3584 8 7 5.5410 -1.1002 -2.4136 9 14 3.3013 -2.1076 -3.6960 10 1 2.9395 -1.1625 -4.7827 11 1 4.1601 -3.1878 -4.2448 12 1 2.0658 -2.7004 -3.1238 13 7 2.0197 -0.6925 1.1995 14 6 1.2472 -0.3005 2.3859 15 6 3.3818 -0.4594 1.3901 16 6 3.8493 0.8071 1.7303 17 6 5.2047 0.9976 1.9099 18 7 6.0559 0.0003 1.7634 19 6 5.6570 -1.2177 1.4469 20 6 4.3151 -1.4925 1.2432 21 7 3.8975 -2.7850 0.9015 22 1 -0.3634 0.4059 -0.9440 23 1 -0.3634 -1.0206 0.1205 24 1 -0.3633 0.6146 0.8236 25 1 1.7516 -1.7715 -1.2056 26 1 1.6053 -0.2616 -2.1370 27 1 6.0253 -1.5063 -3.1494 28 1 1.3961 0.7615 2.5817 29 1 0.1888 -0.4927 2.2102 30 1 1.5838 -0.8793 3.2460 31 1 3.1604 1.6299 1.8521 32 1 5.5739 1.9778 2.1735 33 1 6.3858 -2.0078 1.3415 34 1 2.9552 -2.9699 0.7645 35 1 4.5510 -3.4944 0.7980 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695909461.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:41 Heat of formation + Delta-G solvation = 31.804928 kcal Electronic energy + Delta-G solvation = -17674.599412 eV Core-core repulsion = 15093.098938 eV Total energy + Delta-G solvation = -2581.500474 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.41134 -38.65333 -35.47210 -34.86999 -33.23033 -31.39442 -29.89347 -28.85414 -26.91195 -24.47057 -23.58019 -22.94363 -20.79905 -18.75910 -18.25915 -17.97707 -17.18165 -16.39163 -16.22174 -15.64824 -15.05382 -14.94208 -14.61730 -14.54828 -14.16775 -13.88792 -13.49858 -13.30944 -12.88871 -12.79198 -12.56392 -12.35389 -12.08756 -11.83372 -11.63512 -11.27412 -11.05329 -10.56186 -10.22756 -9.81254 -9.25118 -8.15844 -7.96671 -6.01191 0.57360 0.91399 1.35599 1.40052 1.47411 2.47040 2.98072 3.14768 3.33323 3.47046 3.99465 4.20068 4.29268 4.32084 4.43124 4.49907 4.63909 4.71124 4.82074 4.95158 4.96874 5.03831 5.11217 5.18094 5.26739 5.34055 5.49716 5.60167 5.82183 5.94630 6.27215 6.45441 6.57879 6.90965 7.04717 7.25652 7.46381 7.58010 9.09128 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.019944 B = 0.013860 C = 0.009830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.565005 B = 2019.739069 C = 2847.868516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.098 3.902 3 H 0.022 0.978 4 C -0.006 4.006 5 C -0.497 4.497 6 H 0.067 0.933 7 C 0.023 3.977 8 N -0.938 5.938 9 Si 0.921 3.079 10 H -0.286 1.286 11 H -0.299 1.299 12 H -0.250 1.250 13 N -0.492 5.492 14 C 0.024 3.976 15 C 0.082 3.918 16 C -0.170 4.170 17 C 0.014 3.986 18 N -0.476 5.476 19 C 0.004 3.996 20 C 0.232 3.768 21 N -0.839 5.839 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.022 0.978 26 H 0.009 0.991 27 H 0.253 0.747 28 H 0.030 0.970 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.134 0.866 32 H 0.158 0.842 33 H 0.140 0.860 34 H 0.405 0.595 35 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.919 -0.636 8.775 13.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.008 4.008 3 H 0.040 0.960 4 C -0.044 4.044 5 C -0.535 4.535 6 H 0.085 0.915 7 C -0.174 4.174 8 N -0.580 5.580 9 Si 0.748 3.252 10 H -0.212 1.212 11 H -0.226 1.226 12 H -0.174 1.174 13 N -0.214 5.214 14 C -0.122 4.122 15 C -0.025 4.025 16 C -0.192 4.192 17 C -0.146 4.146 18 N -0.185 5.185 19 C -0.158 4.158 20 C 0.120 3.880 21 N -0.376 5.376 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.040 0.960 26 H 0.027 0.973 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.113 0.887 30 H 0.084 0.916 31 H 0.152 0.848 32 H 0.175 0.825 33 H 0.158 0.842 34 H 0.235 0.765 35 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -9.007 -1.040 8.726 12.584 hybrid contribution -0.503 -0.005 -1.432 1.517 sum -9.510 -1.044 7.295 12.031 Atomic orbital electron populations 1.21972 0.92789 1.02800 1.02372 1.21612 0.95205 0.94301 0.89718 0.95975 1.19615 0.95363 0.96173 0.93250 1.21668 0.91418 1.32247 1.08198 0.91473 1.25556 0.94933 0.97319 0.99572 1.70095 1.07875 1.47433 1.32626 0.86132 0.79684 0.78750 0.80620 1.21204 1.22560 1.17404 1.59356 0.99436 1.58640 1.03964 1.22594 0.99343 0.98884 0.91395 1.18281 0.90229 0.91482 1.02465 1.22315 0.97446 0.97379 1.02099 1.22335 0.89820 0.98161 1.04278 1.67287 1.39719 1.00219 1.11294 1.21937 0.92645 0.94818 1.06408 1.18443 0.92512 0.86967 0.90069 1.42091 1.11180 1.06661 1.77623 0.92030 0.91381 0.90861 0.96003 0.97268 0.93806 0.95147 0.88657 0.91629 0.84793 0.82471 0.84219 0.76534 0.77516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 8.04 71.98 0.58 -3.13 16 2 C 0.10 3.49 2.39 44.91 0.11 3.60 16 3 H 0.02 0.87 7.34 -2.39 -0.02 0.85 16 4 C -0.01 -0.27 3.72 29.85 0.11 -0.16 16 5 C -0.50 -26.03 7.25 25.60 0.19 -25.85 16 6 H 0.07 3.83 4.45 -2.91 -0.01 3.81 16 7 C 0.02 1.26 5.47 84.65 0.46 1.72 16 8 N -0.94 -56.92 13.96 21.45 0.30 -56.62 16 9 Si 0.92 43.71 27.47 68.60 1.88 45.59 16 10 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 11 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 12 H -0.25 -11.01 6.54 99.48 0.65 -10.35 16 13 N -0.49 -16.41 3.90 -694.82 -2.71 -19.11 16 14 C 0.02 0.61 8.55 127.69 1.09 1.71 16 15 C 0.08 3.17 2.62 38.59 0.10 3.27 16 16 C -0.17 -6.41 7.89 22.46 0.18 -6.24 16 17 C 0.01 0.56 11.17 84.63 0.95 1.51 16 18 N -0.48 -21.14 10.36 -195.59 -2.03 -23.16 16 19 C 0.00 0.18 11.02 84.72 0.93 1.12 16 20 C 0.23 9.43 4.57 38.31 0.18 9.61 16 21 N -0.84 -29.84 8.91 -50.72 -0.45 -30.29 16 22 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.07 1.69 8.10 -2.39 -0.02 1.67 16 24 H 0.07 1.55 6.74 -2.39 -0.02 1.53 16 25 H 0.02 0.95 7.20 -2.39 -0.02 0.94 16 26 H 0.01 0.40 7.57 -2.39 -0.02 0.39 16 27 H 0.25 14.85 8.31 -92.70 -0.77 14.08 16 28 H 0.03 0.73 7.01 -2.38 -0.02 0.72 16 29 H 0.09 1.96 6.08 -2.39 -0.01 1.94 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.13 4.37 7.17 -2.91 -0.02 4.35 16 32 H 0.16 5.29 8.06 -2.91 -0.02 5.26 16 33 H 0.14 5.74 8.06 -2.91 -0.02 5.71 16 34 H 0.40 13.83 8.22 -92.71 -0.76 13.07 16 35 H 0.40 12.69 8.86 -92.70 -0.82 11.87 16 Total: -1.00 -65.41 277.46 1.34 -64.07 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: -0.53 Total: 32.38 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 4.87 Total: -12.85 kcal Atomic # 7 Polarization: -124.30 SS G_CDS: -4.89 Total: -129.19 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.59 kcal Total: -65.41 1.34 -64.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695909461.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.872 kcal (2) G-P(sol) polarization free energy of solvation -65.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds