Wall clock time and date at job start Mon Mar 30 2020 03:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35252 * 126.06800 * 2 1 4 4 N 1.34960 * 107.85876 * 180.02562 * 3 2 1 5 5 C 1.46503 * 125.96928 * 180.02562 * 4 3 2 6 6 N 1.40077 * 108.05638 * 359.77114 * 4 3 2 7 7 C 1.31218 * 108.16924 * 0.38714 * 6 4 3 8 8 N 1.39988 * 125.97420 * 179.88546 * 7 6 4 9 9 C 1.46498 * 120.00085 * 354.17499 * 8 7 6 10 10 C 1.53003 * 109.47418 * 185.28629 * 9 8 7 11 11 C 1.50691 * 115.56318 * 268.78568 * 10 9 8 12 12 H 1.07997 * 120.00173 * 142.22236 * 11 10 9 13 13 C 1.37884 * 120.00154 * 322.21476 * 11 10 9 14 14 N 1.31517 * 119.99599 * 342.80503 * 13 11 10 15 15 Si 1.86793 * 120.00269 * 162.80759 * 13 11 10 16 16 H 1.48494 * 109.47218 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47415 * 119.99977 * 15 13 11 18 18 H 1.48500 * 109.47070 * 240.00099 * 15 13 11 19 19 C 1.52998 * 117.49380 * 54.47320 * 10 9 8 20 20 C 1.52994 * 60.03235 * 107.47620 * 19 10 9 21 21 H 1.08999 * 109.46897 * 274.19177 * 1 2 3 22 22 H 1.09003 * 109.46857 * 34.19140 * 1 2 3 23 23 H 1.08997 * 109.47005 * 154.19100 * 1 2 3 24 24 H 1.07994 * 126.06946 * 0.02562 * 3 2 1 25 25 H 1.09000 * 109.47672 * 89.99693 * 5 4 3 26 26 H 1.09011 * 109.46777 * 210.00084 * 5 4 3 27 27 H 1.09001 * 109.46979 * 329.99089 * 5 4 3 28 28 H 0.97000 * 120.00181 * 174.17756 * 8 7 6 29 29 H 1.09004 * 109.47213 * 65.28985 * 9 8 7 30 30 H 1.08998 * 109.47603 * 305.29311 * 9 8 7 31 31 H 0.96996 * 119.99698 * 185.05893 * 14 13 11 32 32 H 1.09006 * 117.49845 * 214.97954 * 19 10 9 33 33 H 1.09000 * 117.50218 * 359.96962 * 19 10 9 34 34 H 1.09003 * 117.49912 * 107.50227 * 20 19 10 35 35 H 1.08998 * 117.49824 * 252.51558 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0933 0.0000 4 7 3.5853 0.6715 -0.0006 5 6 4.7732 1.5290 -0.0002 6 7 3.5816 -0.7292 0.0044 7 6 2.3338 -1.1351 -0.0006 8 7 1.9022 -2.4668 -0.0004 9 6 2.8776 -3.5529 -0.1229 10 6 2.1415 -4.8901 -0.2282 11 6 1.8857 -5.5962 1.0782 12 1 0.9581 -6.1274 1.2324 13 6 2.8361 -5.5643 2.0768 14 7 4.0752 -5.2259 1.7945 15 14 2.3636 -6.0017 3.8302 16 1 0.9195 -6.3437 3.8831 17 1 3.1656 -7.1666 4.2831 18 1 2.6299 -4.8419 4.7186 19 6 1.0847 -5.0301 -1.3256 20 6 2.4242 -5.7575 -1.4574 21 1 -0.3633 0.0751 1.0249 22 1 -0.3633 0.8501 -0.5775 23 1 -0.3633 -0.9251 -0.4474 24 1 1.9721 2.1211 0.0004 25 1 5.0681 1.7410 1.0275 26 1 5.5887 1.0202 -0.5147 27 1 4.5469 2.4635 -0.5135 28 1 0.9573 -2.6704 0.0809 29 1 3.5236 -3.5620 0.7551 30 1 3.4820 -3.3995 -1.0169 31 1 4.7593 -5.2741 2.4805 32 1 0.2043 -5.6330 -1.1027 33 1 0.9134 -4.1695 -1.9723 34 1 2.4252 -6.8389 -1.3211 35 1 3.1345 -5.3752 -2.1905 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697771186.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:40 Heat of formation + Delta-G solvation = 87.828391 kcal Electronic energy + Delta-G solvation = -16550.802738 eV Core-core repulsion = 13971.731623 eV Total energy + Delta-G solvation = -2579.071114 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.86790 -38.87743 -35.82975 -34.24118 -33.37751 -31.93980 -28.61466 -27.82626 -26.89125 -25.13810 -22.99053 -21.69983 -20.81814 -20.70013 -18.31630 -17.62548 -16.74293 -16.31041 -16.23888 -15.86668 -15.48967 -14.63259 -14.27630 -14.09472 -13.95326 -13.76896 -13.50760 -13.07818 -13.01602 -12.88070 -12.67550 -12.64740 -12.28888 -12.08562 -11.35241 -11.23263 -11.05843 -10.75271 -10.63327 -10.05674 -9.33327 -8.31767 -8.06645 -6.18020 1.21035 1.37491 1.42446 1.52570 1.80408 2.19824 2.39427 2.84242 3.04329 3.65229 3.88540 4.17493 4.27304 4.51746 4.55135 4.55677 4.63489 4.71588 4.75251 4.89508 4.92440 4.94461 5.03272 5.08231 5.18656 5.27600 5.39407 5.53627 5.58795 5.66698 6.01421 6.39027 6.44462 6.54968 6.79349 6.88944 7.41367 7.45864 8.89473 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.022565 B = 0.007489 C = 0.006883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.545848 B = 3737.722161 C = 4066.779414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.306 4.306 3 C 0.085 3.915 4 N -0.391 5.391 5 C 0.104 3.896 6 N -0.409 5.409 7 C 0.322 3.678 8 N -0.708 5.708 9 C 0.185 3.815 10 C 0.012 3.988 11 C -0.508 4.508 12 H 0.060 0.940 13 C 0.027 3.973 14 N -0.898 5.898 15 Si 0.950 3.050 16 H -0.262 1.262 17 H -0.280 1.280 18 H -0.287 1.287 19 C -0.176 4.176 20 C -0.199 4.199 21 H 0.058 0.942 22 H 0.083 0.917 23 H 0.049 0.951 24 H 0.218 0.782 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.123 0.877 28 H 0.406 0.594 29 H 0.069 0.931 30 H 0.005 0.995 31 H 0.261 0.739 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.218 14.564 -3.244 15.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.321 4.321 3 C -0.063 4.063 4 N -0.174 5.174 5 C -0.037 4.037 6 N -0.243 5.243 7 C 0.064 3.936 8 N -0.349 5.349 9 C 0.061 3.939 10 C 0.011 3.989 11 C -0.545 4.545 12 H 0.078 0.922 13 C -0.174 4.174 14 N -0.535 5.535 15 Si 0.776 3.224 16 H -0.186 1.186 17 H -0.205 1.205 18 H -0.213 1.213 19 C -0.213 4.213 20 C -0.238 4.238 21 H 0.077 0.923 22 H 0.102 0.898 23 H 0.068 0.932 24 H 0.235 0.765 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.141 0.859 28 H 0.243 0.757 29 H 0.087 0.913 30 H 0.023 0.977 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.528 14.306 -3.155 14.866 hybrid contribution -0.736 -0.564 0.854 1.261 sum -3.264 13.742 -2.301 14.311 Atomic orbital electron populations 1.19935 0.87781 1.02367 1.01591 1.20177 0.98245 0.90207 1.23450 1.22783 0.83243 1.00740 0.99489 1.48278 1.06859 1.03203 1.59052 1.22024 0.84673 0.93131 1.03824 1.77480 1.18828 0.90795 1.37238 1.19712 0.91511 0.87013 0.95411 1.43930 1.09012 0.99564 1.82381 1.20568 0.90110 0.84127 0.99073 1.19226 0.97609 0.93043 0.89041 1.20792 1.02810 1.33106 0.97757 0.92228 1.25679 0.94566 0.94810 1.02376 1.70030 1.01246 1.47684 1.34562 0.85626 0.78976 0.77418 0.80371 1.18626 1.20539 1.21307 1.22813 0.92402 1.02231 1.03885 1.22952 0.99090 0.98216 1.03534 0.92333 0.89788 0.93219 0.76515 0.90569 0.90666 0.85853 0.75689 0.91284 0.97673 0.92934 0.89522 0.89592 0.90738 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.46 10.24 71.24 0.73 -0.73 16 2 C -0.31 -9.93 6.12 -20.02 -0.12 -10.05 16 3 C 0.08 2.22 11.39 83.52 0.95 3.17 16 4 N -0.39 -12.27 4.01 -369.59 -1.48 -13.76 16 5 C 0.10 2.06 11.47 127.77 1.46 3.52 16 6 N -0.41 -17.91 12.24 -54.55 -0.67 -18.57 16 7 C 0.32 13.66 7.87 133.39 1.05 14.71 16 8 N -0.71 -31.87 5.61 -343.93 -1.93 -33.80 16 9 C 0.19 9.63 5.80 86.38 0.50 10.13 16 10 C 0.01 0.59 1.84 -52.91 -0.10 0.49 16 11 C -0.51 -27.95 9.00 25.60 0.23 -27.72 16 12 H 0.06 3.23 7.87 -2.91 -0.02 3.20 16 13 C 0.03 1.48 5.04 84.66 0.43 1.90 16 14 N -0.90 -52.81 11.09 21.45 0.24 -52.57 16 15 Si 0.95 44.17 29.58 68.60 2.03 46.20 16 16 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 19 C -0.18 -7.48 9.46 30.59 0.29 -7.20 16 20 C -0.20 -9.35 9.88 30.62 0.30 -9.05 16 21 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.05 1.30 7.62 -2.39 -0.02 1.28 16 24 H 0.22 3.11 8.06 -2.91 -0.02 3.09 16 25 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 27 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.41 16.97 7.66 -92.71 -0.71 16.26 16 29 H 0.07 4.14 5.35 -2.39 -0.01 4.13 16 30 H 0.00 0.27 7.87 -2.39 -0.02 0.25 16 31 H 0.26 14.70 8.32 -92.71 -0.77 13.93 16 32 H 0.09 3.48 8.14 -2.38 -0.02 3.46 16 33 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 34 H 0.07 3.50 8.14 -2.39 -0.02 3.49 16 35 H 0.07 3.13 8.03 -2.39 -0.02 3.11 16 Total: -1.00 -70.59 297.87 4.28 -66.31 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.37 Total: 27.03 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: 5.73 Total: -20.83 kcal Atomic # 7 Polarization: -114.86 SS G_CDS: -3.84 Total: -118.70 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -70.59 4.28 -66.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697771186.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.134 kcal (2) G-P(sol) polarization free energy of solvation -70.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds