Wall clock time and date at job start Mon Mar 30 2020 03:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47114 * 2 1 4 4 N 1.31943 * 120.05440 * 275.01836 * 3 2 1 5 5 C 1.32245 * 120.08780 * 179.72456 * 4 3 2 6 6 C 1.38208 * 120.18690 * 0.54916 * 5 4 3 7 7 N 1.32218 * 120.10459 * 359.72720 * 6 5 4 8 8 C 1.32683 * 119.91546 * 359.97438 * 7 6 5 9 9 N 1.38998 * 120.10012 * 179.97438 * 8 7 6 10 10 C 1.46904 * 110.99967 * 306.89212 * 9 8 7 11 11 C 1.46903 * 110.99646 * 70.83990 * 9 8 7 12 12 H 1.09002 * 109.46848 * 55.00723 * 11 9 8 13 13 C 1.52999 * 109.47370 * 295.00113 * 11 9 8 14 14 C 1.50700 * 109.46968 * 175.00365 * 11 9 8 15 15 H 1.08005 * 120.00344 * 35.23536 * 14 11 9 16 16 C 1.37877 * 119.99935 * 215.24064 * 14 11 9 17 17 N 1.31512 * 120.00048 * 178.42118 * 16 14 11 18 18 Si 1.86801 * 120.00049 * 358.42020 * 16 14 11 19 19 H 1.48496 * 109.47056 * 86.39690 * 18 16 14 20 20 H 1.48497 * 109.47039 * 206.39691 * 18 16 14 21 21 H 1.48498 * 109.46937 * 326.39800 * 18 16 14 22 22 H 1.08997 * 109.47396 * 300.00514 * 1 2 3 23 23 H 1.09007 * 109.47123 * 60.00036 * 1 2 3 24 24 H 1.08993 * 109.47407 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47399 * 240.00258 * 2 1 3 26 26 H 1.09003 * 109.46846 * 119.99567 * 2 1 3 27 27 H 1.07995 * 119.90816 * 180.25390 * 5 4 3 28 28 H 1.07997 * 119.94981 * 179.75132 * 6 5 4 29 29 H 1.08996 * 109.47241 * 58.81899 * 10 9 8 30 30 H 1.09002 * 109.47007 * 178.82986 * 10 9 8 31 31 H 1.09005 * 109.46617 * 298.82111 * 10 9 8 32 32 H 1.08998 * 109.47019 * 305.85002 * 13 11 9 33 33 H 1.09003 * 109.46625 * 65.84640 * 13 11 9 34 34 H 1.08997 * 109.47273 * 185.84708 * 13 11 9 35 35 H 0.97006 * 120.00296 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.1584 2.0772 -1.1377 5 6 2.5940 3.3258 -1.1379 6 6 2.9297 3.9450 0.0512 7 7 2.8114 3.2926 1.1951 8 6 2.3692 2.0416 1.2007 9 7 2.2439 1.3519 2.4010 10 6 3.5001 1.3867 3.1618 11 6 1.1304 1.8822 3.1990 12 1 0.2162 1.8621 2.6056 13 6 1.4391 3.3228 3.6115 14 6 0.9477 1.0349 4.4318 15 1 1.8075 0.6041 4.9233 16 6 -0.3172 0.8095 4.9322 17 7 -0.4794 0.0448 5.9897 18 14 -1.8005 1.5905 4.1080 19 1 -2.2691 0.7173 3.0021 20 1 -2.8898 1.7560 5.1035 21 1 -1.4217 2.9190 3.5632 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.6922 3.8617 -2.0704 28 1 3.2888 4.9635 0.0461 29 1 3.7756 2.4223 3.3612 30 1 3.3681 0.8576 4.1056 31 1 4.2888 0.9059 2.5830 32 1 2.4052 3.3574 4.1151 33 1 1.4686 3.9562 2.7249 34 1 0.6636 3.6811 4.2884 35 1 -1.3692 -0.1135 6.3420 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699511157.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:13 Heat of formation + Delta-G solvation = 61.137130 kcal Electronic energy + Delta-G solvation = -17349.156722 eV Core-core repulsion = 14768.928188 eV Total energy + Delta-G solvation = -2580.228534 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.98807 -37.36904 -34.62833 -33.11160 -32.07232 -30.13500 -28.88774 -25.86083 -25.32686 -24.61092 -22.79254 -21.43318 -19.74886 -17.53604 -17.10190 -16.18210 -15.67760 -15.21670 -14.30440 -14.14083 -13.63755 -13.50621 -13.29282 -12.86902 -12.45361 -12.14919 -11.93686 -11.56341 -11.43288 -11.21024 -11.08995 -10.96311 -10.66207 -10.52886 -10.48855 -10.28425 -9.80649 -9.17835 -8.72727 -8.63893 -8.62183 -7.73779 -6.14945 -4.14153 1.08419 1.44465 3.23092 3.31888 3.34134 3.94098 4.17707 4.34635 4.45256 4.68847 4.89697 5.19502 5.34818 5.46890 5.52483 5.73556 5.82200 5.96105 6.04411 6.20487 6.25067 6.30425 6.41143 6.56860 6.58872 6.65732 6.68769 6.72486 6.92969 7.18554 7.47119 7.58194 7.82639 7.94841 8.15423 8.51867 8.89083 9.46187 10.97173 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.026617 B = 0.009814 C = 0.008885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.696371 B = 2852.515336 C = 3150.688207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.061 4.061 3 C 0.103 3.897 4 N -0.440 5.440 5 C 0.024 3.976 6 C 0.045 3.955 7 N -0.461 5.461 8 C 0.267 3.733 9 N -0.473 5.473 10 C 0.034 3.966 11 C 0.187 3.813 12 H 0.039 0.961 13 C -0.169 4.169 14 C -0.500 4.500 15 H 0.083 0.917 16 C 0.078 3.922 17 N -0.893 5.893 18 Si 0.868 3.132 19 H -0.272 1.272 20 H -0.287 1.287 21 H -0.267 1.267 22 H 0.059 0.941 23 H 0.048 0.952 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.103 0.897 27 H 0.161 0.839 28 H 0.159 0.841 29 H 0.037 0.963 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.035 0.965 34 H 0.047 0.953 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.674 4.450 -11.720 13.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.100 4.100 3 C -0.040 4.040 4 N -0.155 5.155 5 C -0.135 4.135 6 C -0.116 4.116 7 N -0.179 5.179 8 C 0.035 3.965 9 N -0.196 5.196 10 C -0.114 4.114 11 C 0.083 3.917 12 H 0.057 0.943 13 C -0.229 4.229 14 C -0.538 4.538 15 H 0.101 0.899 16 C -0.125 4.125 17 N -0.530 5.530 18 Si 0.695 3.305 19 H -0.198 1.198 20 H -0.213 1.213 21 H -0.192 1.192 22 H 0.078 0.922 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.121 0.879 27 H 0.179 0.821 28 H 0.176 0.824 29 H 0.056 0.944 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.434 3.877 -11.673 13.074 hybrid contribution -0.696 1.487 -0.198 1.654 sum 3.738 5.364 -11.871 13.552 Atomic orbital electron populations 1.21664 0.94354 1.02106 1.01785 1.20360 0.96368 0.89410 1.03841 1.22128 0.96124 0.98117 0.87653 1.68212 1.10287 1.07881 1.29081 1.23501 0.98262 0.92232 0.99462 1.23553 0.98102 1.01016 0.88887 1.68836 1.11476 1.08325 1.29289 1.21278 0.92928 0.87717 0.94558 1.60800 1.07012 1.49207 1.02562 1.22317 0.89294 1.00638 0.99108 1.19786 0.87832 0.91435 0.92669 0.94343 1.22637 1.01206 0.99162 0.99864 1.20837 0.94565 1.30741 1.07663 0.89873 1.24899 0.98429 0.94269 0.94870 1.69867 1.23059 1.36890 1.23215 0.87015 0.83079 0.80639 0.79743 1.19754 1.21278 1.19207 0.92175 0.93307 0.91904 0.90992 0.87889 0.82139 0.82397 0.94401 0.89216 0.93609 0.92995 0.94564 0.93409 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.89 37.16 0.37 -1.92 16 2 C -0.06 -0.99 6.09 -27.88 -0.17 -1.16 16 3 C 0.10 1.84 6.07 -82.15 -0.50 1.34 16 4 N -0.44 -7.18 10.41 -9.12 -0.09 -7.28 16 5 C 0.02 0.33 11.21 -17.38 -0.19 0.14 16 6 C 0.05 0.65 11.22 -17.40 -0.20 0.45 16 7 N -0.46 -8.34 7.19 -12.24 -0.09 -8.42 16 8 C 0.27 5.14 5.22 -154.72 -0.81 4.33 16 9 N -0.47 -9.87 3.61 -174.62 -0.63 -10.50 16 10 C 0.03 0.65 8.65 60.07 0.52 1.17 16 11 C 0.19 4.40 1.90 -68.86 -0.13 4.27 16 12 H 0.04 0.95 4.99 -51.93 -0.26 0.69 16 13 C -0.17 -3.76 8.11 37.16 0.30 -3.46 16 14 C -0.50 -13.39 8.65 -34.44 -0.30 -13.69 16 15 H 0.08 2.38 6.27 -52.48 -0.33 2.05 16 16 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 17 N -0.89 -26.31 13.96 55.43 0.77 -25.53 16 18 Si 0.87 21.13 26.57 -169.99 -4.52 16.61 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.38 6.71 56.52 0.38 -6.00 16 22 H 0.06 1.14 7.61 -51.93 -0.39 0.74 16 23 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.10 1.77 7.31 -51.93 -0.38 1.39 16 27 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 28 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.04 0.73 6.00 -51.93 -0.31 0.41 16 30 H 0.09 1.84 6.04 -51.93 -0.31 1.52 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 1.12 6.19 -51.93 -0.32 0.80 16 33 H 0.04 0.77 6.12 -51.93 -0.32 0.45 16 34 H 0.05 1.09 7.63 -51.93 -0.40 0.69 16 35 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 280.28 15.07 4.22 4.22 Total: -1.00 -29.82 280.28 -6.25 -36.08 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -4.72 Total: 1.30 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -1.20 Total: -6.47 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: -0.04 Total: -51.74 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.52 Total: 16.61 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.82 -6.25 -36.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699511157.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.213 kcal (2) G-P(sol) polarization free energy of solvation -29.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds