Wall clock time and date at job start Mon Mar 30 2020 03:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47114 * 2 1 4 4 N 1.31943 * 120.05440 * 275.01836 * 3 2 1 5 5 C 1.32245 * 120.08780 * 179.72456 * 4 3 2 6 6 C 1.38208 * 120.18690 * 0.54916 * 5 4 3 7 7 N 1.32218 * 120.10459 * 359.72720 * 6 5 4 8 8 C 1.32683 * 119.91546 * 359.97438 * 7 6 5 9 9 N 1.38998 * 120.10012 * 179.97438 * 8 7 6 10 10 C 1.46904 * 110.99967 * 306.89212 * 9 8 7 11 11 C 1.46903 * 110.99646 * 70.83990 * 9 8 7 12 12 H 1.09002 * 109.46848 * 55.00723 * 11 9 8 13 13 C 1.52999 * 109.47370 * 295.00113 * 11 9 8 14 14 C 1.50700 * 109.46968 * 175.00365 * 11 9 8 15 15 H 1.08005 * 120.00344 * 35.23536 * 14 11 9 16 16 C 1.37877 * 119.99935 * 215.24064 * 14 11 9 17 17 N 1.31512 * 120.00048 * 178.42118 * 16 14 11 18 18 Si 1.86801 * 120.00049 * 358.42020 * 16 14 11 19 19 H 1.48496 * 109.47056 * 86.39690 * 18 16 14 20 20 H 1.48497 * 109.47039 * 206.39691 * 18 16 14 21 21 H 1.48498 * 109.46937 * 326.39800 * 18 16 14 22 22 H 1.08997 * 109.47396 * 300.00514 * 1 2 3 23 23 H 1.09007 * 109.47123 * 60.00036 * 1 2 3 24 24 H 1.08993 * 109.47407 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47399 * 240.00258 * 2 1 3 26 26 H 1.09003 * 109.46846 * 119.99567 * 2 1 3 27 27 H 1.07995 * 119.90816 * 180.25390 * 5 4 3 28 28 H 1.07997 * 119.94981 * 179.75132 * 6 5 4 29 29 H 1.08996 * 109.47241 * 58.81899 * 10 9 8 30 30 H 1.09002 * 109.47007 * 178.82986 * 10 9 8 31 31 H 1.09005 * 109.46617 * 298.82111 * 10 9 8 32 32 H 1.08998 * 109.47019 * 305.85002 * 13 11 9 33 33 H 1.09003 * 109.46625 * 65.84640 * 13 11 9 34 34 H 1.08997 * 109.47273 * 185.84708 * 13 11 9 35 35 H 0.97006 * 120.00296 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.1584 2.0772 -1.1377 5 6 2.5940 3.3258 -1.1379 6 6 2.9297 3.9450 0.0512 7 7 2.8114 3.2926 1.1951 8 6 2.3692 2.0416 1.2007 9 7 2.2439 1.3519 2.4010 10 6 3.5001 1.3867 3.1618 11 6 1.1304 1.8822 3.1990 12 1 0.2162 1.8621 2.6056 13 6 1.4391 3.3228 3.6115 14 6 0.9477 1.0349 4.4318 15 1 1.8075 0.6041 4.9233 16 6 -0.3172 0.8095 4.9322 17 7 -0.4794 0.0448 5.9897 18 14 -1.8005 1.5905 4.1080 19 1 -2.2691 0.7173 3.0021 20 1 -2.8898 1.7560 5.1035 21 1 -1.4217 2.9190 3.5632 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.6922 3.8617 -2.0704 28 1 3.2888 4.9635 0.0461 29 1 3.7756 2.4223 3.3612 30 1 3.3681 0.8576 4.1056 31 1 4.2888 0.9059 2.5830 32 1 2.4052 3.3574 4.1151 33 1 1.4686 3.9562 2.7249 34 1 0.6636 3.6811 4.2884 35 1 -1.3692 -0.1135 6.3420 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699511157.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:12 Heat of formation + Delta-G solvation = 41.733238 kcal Electronic energy + Delta-G solvation = -17349.998138 eV Core-core repulsion = 14768.928188 eV Total energy + Delta-G solvation = -2581.069950 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.27743 -38.94091 -35.88544 -34.92507 -33.64382 -31.79444 -30.29442 -27.37584 -27.27514 -25.89442 -24.27434 -22.69122 -21.49492 -19.06746 -18.81808 -17.59048 -17.17201 -16.70976 -15.88409 -15.65705 -15.11356 -14.88753 -14.79184 -14.53242 -14.06571 -13.78797 -13.43237 -13.19688 -13.15926 -12.77831 -12.56136 -12.38731 -12.34147 -12.09196 -11.93995 -11.83271 -11.75380 -11.08129 -10.80081 -10.06307 -9.89808 -9.29437 -8.29221 -6.31789 -0.13826 0.20037 1.29934 1.32310 1.40521 2.31061 2.67020 2.78582 3.13610 3.28978 3.48204 3.71064 4.10497 4.22962 4.35424 4.41435 4.45724 4.50754 4.55164 4.64530 4.76724 4.79459 4.90140 5.02058 5.05832 5.11812 5.21429 5.30583 5.38404 5.48350 5.56236 6.05273 6.15201 6.37721 6.63819 6.73411 6.91712 7.31833 8.86276 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.026617 B = 0.009814 C = 0.008885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.696371 B = 2852.515336 C = 3150.688207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.059 4.059 3 C 0.092 3.908 4 N -0.450 5.450 5 C 0.044 3.956 6 C 0.048 3.952 7 N -0.483 5.483 8 C 0.234 3.766 9 N -0.480 5.480 10 C 0.042 3.958 11 C 0.195 3.805 12 H 0.029 0.971 13 C -0.158 4.158 14 C -0.497 4.497 15 H 0.053 0.947 16 C 0.026 3.974 17 N -0.939 5.939 18 Si 0.924 3.076 19 H -0.264 1.264 20 H -0.284 1.284 21 H -0.259 1.259 22 H 0.027 0.973 23 H 0.059 0.941 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.210 0.790 28 H 0.200 0.800 29 H 0.037 0.963 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.036 0.964 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.914 6.247 -14.669 16.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.098 4.098 3 C -0.049 4.049 4 N -0.165 5.165 5 C -0.116 4.116 6 C -0.114 4.114 7 N -0.201 5.201 8 C 0.004 3.996 9 N -0.203 5.203 10 C -0.105 4.105 11 C 0.089 3.911 12 H 0.047 0.953 13 C -0.217 4.217 14 C -0.536 4.536 15 H 0.071 0.929 16 C -0.172 4.172 17 N -0.579 5.579 18 Si 0.749 3.251 19 H -0.189 1.189 20 H -0.210 1.210 21 H -0.183 1.183 22 H 0.046 0.954 23 H 0.078 0.922 24 H 0.096 0.904 25 H 0.111 0.889 26 H 0.103 0.897 27 H 0.226 0.774 28 H 0.217 0.783 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.681 5.645 -14.622 16.358 hybrid contribution -0.605 1.028 0.572 1.323 sum 4.076 6.674 -14.050 16.080 Atomic orbital electron populations 1.21619 0.94416 1.02760 1.00589 1.20329 0.96250 0.89248 1.03960 1.22172 0.96420 0.98670 0.87681 1.68302 1.10881 1.09187 1.28117 1.24330 0.94970 0.91129 1.01220 1.24281 0.96786 1.02384 0.87933 1.68717 1.11778 1.08097 1.31532 1.21094 0.95925 0.88730 0.93845 1.60491 1.06548 1.50154 1.03086 1.22212 0.89494 1.00412 0.98383 1.19520 0.88800 0.91378 0.91364 0.95330 1.22483 1.00736 0.98445 1.00061 1.21035 0.93572 1.30258 1.08703 0.92931 1.25610 1.01254 0.94935 0.95418 1.69994 1.23736 1.39079 1.25069 0.86104 0.79802 0.80218 0.78983 1.18858 1.20966 1.18306 0.95389 0.92228 0.90411 0.88899 0.89655 0.77366 0.78287 0.94431 0.91422 0.91704 0.92976 0.93222 0.94537 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 9.89 71.98 0.71 -3.56 16 2 C -0.06 -1.86 6.09 29.85 0.18 -1.68 16 3 C 0.09 3.09 6.07 42.80 0.26 3.35 16 4 N -0.45 -13.14 10.41 -182.76 -1.90 -15.04 16 5 C 0.04 0.97 11.21 84.62 0.95 1.92 16 6 C 0.05 1.16 11.22 84.63 0.95 2.11 16 7 N -0.48 -16.24 7.19 -192.64 -1.38 -17.63 16 8 C 0.23 8.70 5.22 133.02 0.69 9.40 16 9 N -0.48 -20.16 3.61 -706.38 -2.55 -22.71 16 10 C 0.04 1.65 8.65 127.69 1.10 2.75 16 11 C 0.20 9.24 1.90 44.17 0.08 9.32 16 12 H 0.03 1.41 4.99 -2.39 -0.01 1.40 16 13 C -0.16 -6.95 8.11 71.98 0.58 -6.37 16 14 C -0.50 -27.54 8.65 25.60 0.22 -27.32 16 15 H 0.05 3.17 6.27 -2.91 -0.02 3.16 16 16 C 0.03 1.51 5.47 84.66 0.46 1.97 16 17 N -0.94 -57.17 13.96 21.45 0.30 -56.87 16 18 Si 0.92 44.08 26.57 68.60 1.82 45.90 16 19 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 21 H -0.26 -11.86 6.71 99.48 0.67 -11.19 16 22 H 0.03 1.03 7.61 -2.39 -0.02 1.02 16 23 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 24 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.08 2.96 7.31 -2.39 -0.02 2.94 16 27 H 0.21 2.59 8.06 -2.91 -0.02 2.56 16 28 H 0.20 3.06 8.06 -2.91 -0.02 3.04 16 29 H 0.04 1.44 6.00 -2.39 -0.01 1.43 16 30 H 0.07 2.90 6.04 -2.39 -0.01 2.89 16 31 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 32 H 0.05 2.24 6.19 -2.39 -0.01 2.23 16 33 H 0.05 2.03 6.12 -2.39 -0.01 2.02 16 34 H 0.04 1.64 7.63 -2.39 -0.02 1.62 16 35 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 Total: -1.00 -65.87 280.28 3.53 -62.34 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 1.04 Total: 12.10 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 6.20 Total: -8.10 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -5.54 Total: -112.24 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.82 Total: 45.90 kcal Total: -65.87 3.53 -62.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699511157.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.074 kcal (2) G-P(sol) polarization free energy of solvation -65.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds