Wall clock time and date at job start Mon Mar 30 2020 04:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47532 * 2 1 4 4 C 1.52999 * 109.47033 * 239.99963 * 2 1 3 5 5 C 1.50697 * 109.47638 * 175.00023 * 4 2 1 6 6 H 1.08006 * 119.99303 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00599 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99896 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00293 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47231 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46848 * 119.99886 * 9 7 5 12 12 H 1.48503 * 109.47194 * 239.99951 * 9 7 5 13 13 N 1.46902 * 109.47118 * 120.00284 * 2 1 3 14 14 C 1.46896 * 110.99945 * 58.95468 * 13 2 1 15 15 C 1.46893 * 110.99788 * 294.99440 * 13 2 1 16 16 C 1.50706 * 109.47176 * 189.99911 * 15 13 2 17 17 C 1.38619 * 120.44480 * 95.00275 * 16 15 13 18 18 C 1.38573 * 118.39661 * 180.02562 * 17 16 15 19 19 N 1.32349 * 119.10937 * 0.02562 * 18 17 16 20 20 C 1.31782 * 120.81593 * 359.97438 * 19 18 17 21 21 N 1.31808 * 121.75476 * 359.71667 * 20 19 18 22 22 H 1.08999 * 109.46972 * 59.99699 * 1 2 3 23 23 H 1.09000 * 109.46670 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46324 * 299.99966 * 1 2 3 25 25 H 1.08996 * 109.47501 * 295.00440 * 4 2 1 26 26 H 1.09006 * 109.47371 * 55.00030 * 4 2 1 27 27 H 0.97001 * 120.00081 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.47186 * 296.04216 * 14 13 2 29 29 H 1.08993 * 109.47654 * 56.04425 * 14 13 2 30 30 H 1.09000 * 109.47132 * 176.04519 * 14 13 2 31 31 H 1.09001 * 109.46739 * 70.00320 * 15 13 2 32 32 H 1.09000 * 109.47767 * 310.00579 * 15 13 2 33 33 H 1.07995 * 120.80051 * 0.02562 * 17 16 15 34 34 H 1.08003 * 120.44481 * 180.02562 * 18 17 16 35 35 H 1.07994 * 119.12178 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3128 6 1 4.0789 -0.0855 -0.5397 7 6 4.2303 -1.1927 -2.3584 8 7 3.5763 -1.8370 -3.3001 9 14 6.0919 -1.0603 -2.4375 10 1 6.5838 -0.2911 -1.2664 11 1 6.6861 -2.4212 -2.4202 12 1 6.4860 -0.3640 -3.6886 13 7 2.0197 -0.6926 1.1994 14 6 1.5284 -2.0761 1.2459 15 6 1.6489 0.0391 2.4180 16 6 2.3680 -0.5573 3.6005 17 6 3.5658 -0.0155 4.0404 18 6 4.1911 -0.5978 5.1313 19 7 3.6283 -1.6451 5.7129 20 6 2.4884 -2.1333 5.2669 21 7 1.8623 -1.6019 4.2359 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3632 0.5139 0.8900 25 1 1.7516 -1.7715 -1.2057 26 1 1.6054 -0.2617 -2.1370 27 1 4.0606 -2.2438 -4.0356 28 1 0.4420 -2.0731 1.3347 29 1 1.8167 -2.5950 0.3318 30 1 1.9618 -2.5869 2.1057 31 1 0.5724 -0.0346 2.5725 32 1 1.9298 1.0870 2.3124 33 1 4.0010 0.8397 3.5449 34 1 5.1253 -0.2024 5.5021 35 1 2.0532 -2.9885 5.7624 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710008487.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:54 Heat of formation + Delta-G solvation = 52.379445 kcal Electronic energy + Delta-G solvation = -16589.564753 eV Core-core repulsion = 14008.956457 eV Total energy + Delta-G solvation = -2580.608296 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.91484 -37.90407 -34.10377 -32.80658 -32.19083 -30.35125 -27.71348 -27.11798 -24.82857 -24.22014 -23.17816 -21.71982 -18.78095 -17.43093 -16.76976 -16.19900 -15.77055 -15.34015 -14.56053 -14.39149 -14.12523 -13.85879 -13.50091 -13.03685 -12.47890 -12.17180 -11.75979 -11.51912 -11.43648 -10.98976 -10.80171 -10.79482 -10.66730 -10.50354 -10.38592 -9.99430 -9.54917 -9.25169 -9.09445 -8.99064 -8.28214 -7.57376 -5.91218 -3.89285 1.02308 1.13039 3.36227 3.43917 3.48535 3.80163 4.13378 4.23336 4.53853 4.55444 4.76169 5.13682 5.15669 5.42252 5.47062 5.59253 5.69249 5.77709 5.90392 5.91989 5.99337 6.10559 6.20595 6.44834 6.47126 6.68249 6.75343 6.92735 7.08760 7.48353 7.60799 7.84140 7.95481 8.09782 8.16557 8.54609 9.16840 9.72718 11.20761 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023480 B = 0.007246 C = 0.006068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.206430 B = 3863.061090 C = 4612.978346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.087 3.913 3 H 0.072 0.928 4 C 0.028 3.972 5 C -0.491 4.491 6 H 0.061 0.939 7 C 0.050 3.950 8 N -0.903 5.903 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.287 1.287 13 N -0.508 5.508 14 C 0.027 3.973 15 C 0.094 3.906 16 C 0.196 3.804 17 C -0.206 4.206 18 C 0.142 3.858 19 N -0.531 5.531 20 C 0.288 3.712 21 N -0.516 5.516 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.040 0.960 25 H 0.022 0.978 26 H 0.021 0.979 27 H 0.257 0.743 28 H 0.020 0.980 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.148 0.852 34 H 0.165 0.835 35 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.257 3.507 14.040 14.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.020 4.020 3 H 0.090 0.910 4 C -0.010 4.010 5 C -0.530 4.530 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.544 5.544 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.213 1.213 13 N -0.231 5.231 14 C -0.121 4.121 15 C -0.035 4.035 16 C 0.049 3.951 17 C -0.229 4.229 18 C -0.023 4.023 19 N -0.245 5.245 20 C 0.000 4.000 21 N -0.230 5.230 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.067 0.933 28 H 0.038 0.962 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.166 0.834 34 H 0.182 0.818 35 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -3.114 2.627 14.306 14.875 hybrid contribution 0.599 0.643 -0.510 1.016 sum -2.515 3.271 13.796 14.400 Atomic orbital electron populations 1.22534 0.99546 1.01579 1.00767 1.21971 0.90244 0.98432 0.91392 0.91028 1.19254 0.96429 0.95540 0.89728 1.21204 0.91772 1.33029 1.06977 0.92101 1.25009 0.98032 0.95865 0.95995 1.69971 1.35145 1.36916 1.12357 0.86585 0.86436 0.77584 0.77668 1.19803 1.21350 1.21334 1.62182 1.59065 1.02165 0.99728 1.22412 0.96757 0.90023 1.02885 1.21087 0.97063 0.97661 0.87652 1.21711 0.91196 0.89104 0.93048 1.22789 0.97275 1.03745 0.99065 1.23173 0.98227 0.90047 0.90864 1.68362 1.11966 1.12254 1.31922 1.24879 0.87923 0.97393 0.89805 1.68288 1.35578 1.10532 1.08648 0.92376 0.92692 0.94080 0.96016 0.96126 0.93335 0.96175 0.89967 0.92479 0.93068 0.89295 0.83396 0.81758 0.79187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.10 8.50 37.16 0.32 -2.78 16 2 C 0.09 1.72 2.29 -67.71 -0.16 1.56 16 3 H 0.07 1.40 8.03 -51.93 -0.42 0.98 16 4 C 0.03 0.68 4.27 -27.88 -0.12 0.57 16 5 C -0.49 -13.57 8.84 -34.44 -0.30 -13.88 16 6 H 0.06 1.68 7.74 -52.48 -0.41 1.27 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 9 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 13 N -0.51 -9.53 4.46 -236.34 -1.05 -10.58 16 14 C 0.03 0.51 8.47 60.06 0.51 1.02 16 15 C 0.09 1.43 4.76 -4.98 -0.02 1.41 16 16 C 0.20 2.92 5.71 -82.24 -0.47 2.45 16 17 C -0.21 -2.69 9.84 -39.32 -0.39 -3.08 16 18 C 0.14 1.72 11.30 -17.21 -0.19 1.53 16 19 N -0.53 -7.16 10.44 -14.58 -0.15 -7.32 16 20 C 0.29 3.82 12.29 -92.15 -1.13 2.69 16 21 N -0.52 -7.73 9.02 -10.79 -0.10 -7.82 16 22 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.05 0.94 6.48 -51.93 -0.34 0.60 16 24 H 0.04 0.60 6.75 -51.93 -0.35 0.25 16 25 H 0.02 0.58 6.09 -51.93 -0.32 0.26 16 26 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.02 0.35 6.51 -51.93 -0.34 0.01 16 29 H 0.08 1.76 6.03 -51.93 -0.31 1.45 16 30 H 0.06 1.06 6.38 -51.93 -0.33 0.73 16 31 H 0.05 0.76 6.94 -51.93 -0.36 0.40 16 32 H 0.09 1.20 7.92 -51.93 -0.41 0.79 16 33 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.17 1.43 8.06 -52.48 -0.42 1.01 16 35 H 0.19 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 287.41 15.07 4.33 4.33 Total: -1.00 -31.31 287.41 -8.14 -39.45 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -4.83 Total: -1.47 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -2.06 Total: -7.17 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.57 Total: -52.08 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.31 -8.14 -39.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710008487.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.831 kcal (2) G-P(sol) polarization free energy of solvation -31.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds