Wall clock time and date at job start Mon Mar 30 2020 03:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47043 * 2 1 4 4 N 1.46896 * 109.46884 * 119.99697 * 2 1 3 5 5 C 1.50699 * 109.47138 * 239.99706 * 2 1 3 6 6 C 1.39870 * 126.03648 * 279.97555 * 5 2 1 7 7 N 1.30839 * 108.20181 * 179.97438 * 6 5 2 8 8 N 1.40090 * 108.20688 * 0.02562 * 7 6 5 9 9 C 1.46496 * 126.03886 * 179.97438 * 8 7 6 10 10 C 1.52990 * 109.47365 * 304.35349 * 9 8 7 11 11 C 1.50702 * 115.56507 * 279.68918 * 10 9 8 12 12 H 1.08002 * 119.99605 * 140.07236 * 11 10 9 13 13 C 1.37873 * 120.00096 * 320.07880 * 11 10 9 14 14 N 1.31520 * 119.99415 * 342.61939 * 13 11 10 15 15 Si 1.86791 * 120.00346 * 162.62268 * 13 11 10 16 16 H 1.48504 * 109.47272 * 89.99886 * 15 13 11 17 17 H 1.48505 * 109.47478 * 209.99622 * 15 13 11 18 18 H 1.48501 * 109.47121 * 330.00009 * 15 13 11 19 19 C 1.53003 * 117.49710 * 133.99674 * 10 9 8 20 20 C 1.53000 * 60.00130 * 252.50965 * 19 10 9 21 21 C 1.34957 * 107.92011 * 0.26324 * 8 7 6 22 22 H 1.08998 * 109.47428 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47436 * 300.00606 * 1 2 3 24 24 H 1.09001 * 109.47229 * 60.00474 * 1 2 3 25 25 H 1.00896 * 111.00270 * 59.99723 * 4 2 1 26 26 H 1.00903 * 111.00071 * 183.95289 * 4 2 1 27 27 H 1.07997 * 125.90155 * 359.97438 * 6 5 2 28 28 H 1.09008 * 109.46715 * 184.35261 * 9 8 7 29 29 H 1.09005 * 109.46945 * 64.36034 * 9 8 7 30 30 H 0.97004 * 119.99887 * 185.11214 * 14 13 11 31 31 H 1.08995 * 117.50228 * 0.02562 * 19 10 9 32 32 H 1.09008 * 117.49550 * 145.02151 * 19 10 9 33 33 H 1.08999 * 117.50082 * 252.50565 * 20 19 10 34 34 H 1.09005 * 117.49432 * 107.48749 * 20 19 10 35 35 H 1.07999 * 126.11906 * 179.73857 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0323 -0.7105 -1.2304 6 6 2.1219 -2.0957 -1.4018 7 7 2.6020 -2.3296 -2.5962 8 7 2.8340 -1.0986 -3.2234 9 6 3.3703 -0.9065 -4.5731 10 6 4.7128 -1.6298 -4.6962 11 6 5.8998 -0.9001 -4.1219 12 1 6.6585 -1.4454 -3.5803 13 6 6.0169 0.4636 -4.2877 14 7 5.3085 1.0770 -5.2106 15 14 7.1818 1.4399 -3.2019 16 1 8.5217 1.4975 -3.8395 17 1 6.6573 2.8182 -3.0269 18 1 7.2925 0.7803 -1.8760 19 6 4.9443 -2.4818 -5.9458 20 6 4.7049 -3.1564 -4.5936 21 6 2.4822 -0.1209 -2.3622 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.6961 -1.6478 1.2229 26 1 3.0262 -0.6500 1.2559 27 1 1.8430 -2.8432 -0.6739 28 1 3.5127 0.1581 -4.7593 29 1 2.6704 -1.3127 -5.3034 30 1 5.4446 2.0228 -5.3777 31 1 4.1403 -2.5266 -6.6804 32 1 5.9551 -2.5144 -6.3526 33 1 5.5580 -3.6329 -4.1108 34 1 3.7431 -3.6453 -4.4385 35 1 2.5454 0.9416 -2.5450 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722440989.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:31 Heat of formation + Delta-G solvation = 94.780041 kcal Electronic energy + Delta-G solvation = -16820.411853 eV Core-core repulsion = 14241.642185 eV Total energy + Delta-G solvation = -2578.769668 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.56517 -36.83873 -35.47652 -32.34273 -31.47029 -29.47326 -28.21676 -26.13676 -25.30874 -22.22607 -21.16576 -20.60094 -19.54443 -18.88135 -16.52206 -15.86042 -15.64482 -14.84358 -14.45264 -14.13692 -13.90563 -13.64427 -13.29629 -12.78366 -12.24264 -12.00877 -11.69972 -11.63290 -11.41848 -11.09571 -11.04625 -10.81872 -10.53686 -10.36517 -9.93579 -9.64670 -9.27999 -8.82698 -8.65865 -8.57823 -8.23830 -7.64269 -6.27672 -4.24198 2.67672 3.15577 3.24397 3.31264 3.35474 3.40920 4.23835 4.84183 4.86334 5.12894 5.42613 5.45114 5.59267 5.66605 5.72842 5.97347 6.02276 6.05130 6.18887 6.34063 6.36763 6.39874 6.56463 6.59656 6.76045 6.82207 6.97044 7.21335 7.31976 7.33574 7.39311 7.65120 7.74545 7.89500 8.23525 8.49261 8.69643 9.33323 10.77066 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.021967 B = 0.009113 C = 0.007357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.311239 B = 3071.839850 C = 3805.238440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.169 3.831 3 H 0.077 0.923 4 N -0.841 5.841 5 C -0.300 4.300 6 C 0.026 3.974 7 N -0.287 5.287 8 N -0.325 5.325 9 C 0.152 3.848 10 C 0.035 3.965 11 C -0.482 4.482 12 H 0.061 0.939 13 C 0.069 3.931 14 N -0.884 5.884 15 Si 0.890 3.110 16 H -0.279 1.279 17 H -0.282 1.282 18 H -0.272 1.272 19 C -0.194 4.194 20 C -0.186 4.186 21 C 0.074 3.926 22 H 0.050 0.950 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.335 0.665 26 H 0.341 0.659 27 H 0.164 0.836 28 H 0.138 0.862 29 H 0.052 0.948 30 H 0.266 0.734 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.925 -0.776 5.999 9.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.057 3.943 3 H 0.095 0.905 4 N -0.368 5.368 5 C -0.314 4.314 6 C -0.159 4.159 7 N -0.109 5.109 8 N -0.104 5.104 9 C 0.032 3.968 10 C 0.034 3.966 11 C -0.519 4.519 12 H 0.079 0.921 13 C -0.133 4.133 14 N -0.522 5.522 15 Si 0.717 3.283 16 H -0.205 1.205 17 H -0.208 1.208 18 H -0.196 1.196 19 C -0.233 4.233 20 C -0.224 4.224 21 C -0.077 4.077 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.147 0.853 26 H 0.153 0.847 27 H 0.181 0.819 28 H 0.155 0.845 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.019 -0.893 5.372 8.884 hybrid contribution 1.062 0.496 0.214 1.192 sum -5.957 -0.397 5.586 8.176 Atomic orbital electron populations 1.21757 0.94834 1.01581 1.01082 1.19557 0.94230 0.96510 0.84047 0.90530 1.59143 1.16466 1.21059 1.40106 1.20798 1.17185 0.93966 0.99464 1.23341 1.01688 0.95176 0.95680 1.77266 1.20169 1.05330 1.08129 1.48944 1.45196 1.02540 1.13688 1.21866 0.93096 1.06235 0.75561 1.19033 0.92985 0.87829 0.96774 1.20526 1.05691 0.91739 1.33905 0.92096 1.24950 0.95971 0.97612 0.94766 1.69766 1.41151 1.11394 1.29927 0.86605 0.80841 0.79307 0.81584 1.20474 1.20765 1.19645 1.23011 1.00451 1.08765 0.91063 1.22800 1.00811 0.98018 1.00735 1.22257 0.99060 0.95580 0.90766 0.93090 0.92604 0.92587 0.85318 0.84672 0.81891 0.84457 0.93018 0.92405 0.91669 0.90175 0.90997 0.90157 0.82089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 9.47 37.16 0.35 -1.28 16 2 C 0.17 2.32 3.80 -68.87 -0.26 2.06 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 4 N -0.84 -10.57 9.14 -5.66 -0.05 -10.63 16 5 C -0.30 -5.01 5.08 -105.05 -0.53 -5.54 16 6 C 0.03 0.46 11.40 -17.36 -0.20 0.26 16 7 N -0.29 -5.96 11.03 30.62 0.34 -5.62 16 8 N -0.32 -6.92 3.67 -61.37 -0.23 -7.14 16 9 C 0.15 3.45 6.21 -4.05 -0.03 3.43 16 10 C 0.03 0.85 1.86 -155.66 -0.29 0.56 16 11 C -0.48 -12.87 8.98 -34.44 -0.31 -13.18 16 12 H 0.06 1.68 7.87 -52.49 -0.41 1.27 16 13 C 0.07 1.79 5.11 -17.82 -0.09 1.70 16 14 N -0.88 -23.01 11.14 55.43 0.62 -22.39 16 15 Si 0.89 20.38 29.58 -169.99 -5.03 15.35 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 C -0.19 -4.40 9.88 -26.73 -0.26 -4.66 16 20 C -0.19 -4.21 9.17 -26.73 -0.25 -4.45 16 21 C 0.07 1.40 11.36 -17.22 -0.20 1.20 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.33 3.83 8.19 -39.29 -0.32 3.51 16 26 H 0.34 4.37 9.06 -39.29 -0.36 4.01 16 27 H 0.16 2.31 7.66 -52.49 -0.40 1.91 16 28 H 0.14 3.30 5.45 -51.92 -0.28 3.01 16 29 H 0.05 1.12 7.95 -51.93 -0.41 0.70 16 30 H 0.27 6.59 8.32 -40.82 -0.34 6.25 16 31 H 0.06 1.37 8.08 -51.93 -0.42 0.95 16 32 H 0.08 1.83 8.14 -51.92 -0.42 1.41 16 33 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 34 H 0.08 1.77 7.47 -51.93 -0.39 1.38 16 35 H 0.16 2.79 8.06 -52.49 -0.42 2.36 16 LS Contribution 295.16 15.07 4.45 4.45 Total: -1.00 -27.42 295.16 -7.05 -34.48 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -5.09 Total: 11.41 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -2.06 Total: -19.90 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.68 Total: -45.79 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.42 -7.05 -34.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722440989.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.258 kcal (2) G-P(sol) polarization free energy of solvation -27.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds