Wall clock time and date at job start Mon Mar 30 2020 03:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35898 * 117.00181 * 2 1 4 4 C 1.38731 * 120.05788 * 179.97438 * 3 2 1 5 5 C 1.38140 * 119.94182 * 180.02562 * 4 3 2 6 6 C 1.38260 * 120.06083 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94604 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.46467 * 90.00389 * 7 6 5 9 9 C 1.53001 * 109.46882 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.47164 * 54.99936 * 9 8 7 11 11 O 1.42903 * 109.47171 * 294.99670 * 9 8 7 12 12 C 1.50707 * 109.47316 * 175.00354 * 9 8 7 13 13 H 1.07995 * 119.99310 * 359.97438 * 12 9 8 14 14 C 1.37872 * 119.99931 * 179.97438 * 12 9 8 15 15 N 1.31515 * 120.00169 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 119.99871 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.46975 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46997 * 119.99957 * 16 14 12 19 19 H 1.48498 * 109.47461 * 240.00253 * 16 14 12 20 20 C 1.38270 * 120.11186 * 0.25763 * 6 5 4 21 21 C 1.38152 * 120.05286 * 359.44883 * 20 6 5 22 22 H 1.08994 * 109.46868 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47230 * 299.99880 * 1 2 3 24 24 H 1.09002 * 109.46876 * 60.00034 * 1 2 3 25 25 H 1.08002 * 120.02300 * 0.02562 * 4 3 2 26 26 H 1.08007 * 119.96870 * 180.02562 * 5 4 3 27 27 H 1.09000 * 109.47587 * 330.00799 * 7 6 5 28 28 H 1.09000 * 109.47203 * 209.99892 * 7 6 5 29 29 H 1.09000 * 109.47347 * 60.00238 * 8 7 6 30 30 H 1.08997 * 109.47714 * 299.99778 * 8 7 6 31 31 H 0.96700 * 114.00311 * 300.00378 * 11 9 8 32 32 H 0.96998 * 119.99752 * 179.97438 * 15 14 12 33 33 H 1.07996 * 119.97212 * 179.69942 * 20 6 5 34 34 H 1.07990 * 120.03086 * 180.25187 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0561 2.5169 0.0011 6 6 3.3020 3.6757 0.0016 7 6 3.9862 5.0185 0.0028 8 6 4.2181 5.4738 -1.4394 9 6 4.9133 6.8367 -1.4384 10 1 5.8282 6.7775 -0.8488 11 8 4.0419 7.8155 -0.8684 12 6 5.2520 7.2291 -2.8535 13 1 4.9972 6.5718 -3.6716 14 6 5.8870 8.4270 -3.1035 15 7 6.1967 9.2276 -2.1071 16 14 6.3074 8.9130 -4.8575 17 1 5.8556 7.8476 -5.7882 18 1 5.6239 10.1874 -5.1955 19 1 7.7764 9.0906 -4.9835 20 6 1.9211 3.6048 0.0070 21 6 1.2915 2.3751 0.0003 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 4.0209 0.3798 0.0005 26 1 5.1346 2.5750 0.0011 27 1 4.9440 4.9379 0.5167 28 1 3.3580 5.7459 0.5169 29 1 3.2603 5.5545 -1.9535 30 1 4.8462 4.7464 -1.9536 31 1 3.2060 7.9219 -1.3429 32 1 6.6438 10.0703 -2.2831 33 1 1.3343 4.5114 0.0123 34 1 0.2130 2.3201 0.0004 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041213428.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:43 Heat of formation + Delta-G solvation = -81.379930 kcal Electronic energy + Delta-G solvation = -15968.672532 eV Core-core repulsion = 13252.252581 eV Total energy + Delta-G solvation = -2716.419951 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.120 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.06170 -37.77444 -35.97526 -32.68913 -32.05255 -30.96825 -29.25509 -27.57229 -26.07513 -23.41617 -22.50533 -20.94429 -20.04656 -18.12321 -16.81853 -16.21014 -15.79277 -15.23405 -14.58361 -14.37756 -14.31619 -14.00678 -13.59525 -13.28525 -12.83711 -12.66480 -12.08327 -11.90678 -11.76972 -11.31360 -10.97063 -10.94320 -10.80132 -10.68950 -10.48921 -10.04745 -9.92063 -8.94695 -8.87738 -8.54395 -8.19830 -7.78725 -5.97305 -4.15001 1.46507 1.57667 3.24126 3.28416 3.36665 3.40498 3.90047 4.41854 4.80883 4.93725 4.98840 5.03718 5.22489 5.28729 5.29701 5.49170 5.55517 5.73895 5.87116 6.06944 6.15976 6.29317 6.39484 6.43970 6.52962 6.62486 6.86195 6.89237 6.98973 7.14650 7.42479 7.78307 7.90224 8.24147 8.88701 9.42986 9.62629 11.06820 Molecular weight = 236.12amu Principal moments of inertia in cm(-1) A = 0.047190 B = 0.004363 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.199951 B = 6416.071636 C = 6552.188355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.107 3.893 4 C -0.150 4.150 5 C -0.082 4.082 6 C -0.099 4.099 7 C -0.077 4.077 8 C -0.133 4.133 9 C 0.226 3.774 10 H 0.055 0.945 11 O -0.567 6.567 12 C -0.570 4.570 13 H 0.055 0.945 14 C 0.077 3.923 15 N -0.861 5.861 16 Si 0.887 3.113 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.081 4.081 21 C -0.205 4.205 22 H 0.096 0.904 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.126 0.874 26 H 0.129 0.871 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.344 0.656 32 H 0.259 0.741 33 H 0.124 0.876 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.788 -14.707 4.578 18.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.063 3.937 4 C -0.168 4.168 5 C -0.100 4.100 6 C -0.099 4.099 7 C -0.115 4.115 8 C -0.171 4.171 9 C 0.169 3.831 10 H 0.073 0.927 11 O -0.370 6.370 12 C -0.608 4.608 13 H 0.074 0.926 14 C -0.128 4.128 15 N -0.497 5.497 16 Si 0.714 3.286 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.099 4.099 21 C -0.224 4.224 22 H 0.114 0.886 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.144 0.856 26 H 0.147 0.853 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.187 0.813 32 H 0.069 0.931 33 H 0.142 0.858 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.115 -14.680 5.071 18.008 hybrid contribution -0.438 0.337 -1.489 1.588 sum -9.553 -14.343 3.582 17.601 Atomic orbital electron populations 1.22994 0.78829 1.03514 1.01288 1.86034 1.21045 1.27314 1.89247 1.18979 0.92382 0.83917 0.98457 1.20384 0.91249 0.98544 1.06638 1.20935 1.00041 0.90967 0.98043 1.20167 0.93540 0.96212 1.00016 1.20648 0.99857 0.91589 0.99362 1.22338 1.00728 1.00710 0.93312 1.19415 0.88634 0.81700 0.93368 0.92729 1.86544 1.30873 1.63063 1.56477 1.21763 1.40776 1.04872 0.93430 0.92636 1.25061 0.94611 0.96426 0.96719 1.70090 1.38816 1.10377 1.30459 0.86646 0.78143 0.78504 0.85265 1.19730 1.20919 1.20895 1.20896 0.94283 0.96871 0.97873 1.21179 0.99634 0.92461 1.09145 0.88575 0.92836 0.92779 0.85597 0.85311 0.91606 0.90851 0.93215 0.92573 0.81301 0.93120 0.85772 0.85901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.00 10.50 -19.42 -0.20 -4.20 16 3 C 0.11 1.46 6.69 -39.21 -0.26 1.20 16 4 C -0.15 -2.05 9.99 -39.44 -0.39 -2.44 16 5 C -0.08 -1.18 9.69 -39.61 -0.38 -1.56 16 6 C -0.10 -1.54 5.13 -104.60 -0.54 -2.08 16 7 C -0.08 -1.34 5.24 -27.88 -0.15 -1.49 16 8 C -0.13 -2.70 4.81 -26.73 -0.13 -2.83 16 9 C 0.23 5.71 2.82 -27.88 -0.08 5.64 16 10 H 0.05 1.51 8.14 -51.93 -0.42 1.09 16 11 O -0.57 -14.48 12.26 -35.23 -0.43 -14.91 16 12 C -0.57 -15.83 8.76 -34.44 -0.30 -16.13 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.08 2.19 5.40 -17.82 -0.10 2.10 16 15 N -0.86 -25.70 12.84 55.43 0.71 -24.99 16 16 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C -0.08 -1.16 9.69 -39.60 -0.38 -1.54 16 21 C -0.21 -2.68 9.04 -39.43 -0.36 -3.03 16 22 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 24 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 25 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 26 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 27 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 28 H 0.07 1.29 7.76 -51.93 -0.40 0.89 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.34 7.78 9.04 45.56 0.41 8.19 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.12 1.29 6.30 -52.49 -0.33 0.96 16 LS Contribution 292.84 15.07 4.41 4.41 Total: -1.00 -31.55 292.84 -6.65 -38.20 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -4.04 Total: 6.12 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -2.08 Total: -20.95 kcal Atomic # 7 Polarization: -25.70 SS G_CDS: 0.71 Total: -24.99 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.64 Total: -19.11 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.55 -6.65 -38.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041213428.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.184 kcal (2) G-P(sol) polarization free energy of solvation -31.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds