Wall clock time and date at job start Mon Mar 30 2020 03:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38256 * 119.56061 * 2 1 4 4 C 1.38537 * 119.22227 * 179.74841 * 3 2 1 5 5 C 1.39142 * 118.37337 * 0.49201 * 4 3 2 6 6 O 1.35911 * 120.46996 * 179.76171 * 5 4 3 7 7 C 1.42895 * 117.00161 * 359.71840 * 6 5 4 8 8 C 1.53006 * 109.47036 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47184 * 179.97438 * 8 7 6 10 10 H 1.08005 * 119.99819 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00046 * 179.97438 * 9 8 7 12 12 N 1.31518 * 119.99944 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99979 * 180.02562 * 11 9 8 14 14 H 1.48510 * 109.46866 * 90.00390 * 13 11 9 15 15 H 1.48502 * 109.47245 * 210.00175 * 13 11 9 16 16 H 1.48494 * 109.47271 * 330.00312 * 13 11 9 17 17 C 1.38710 * 119.05125 * 359.48330 * 5 4 3 18 18 C 1.50695 * 119.65387 * 180.25210 * 17 5 4 19 19 N 1.46901 * 109.47292 * 90.00434 * 18 17 5 20 20 N 1.31838 * 120.68509 * 0.28207 * 17 5 4 21 21 H 1.08998 * 109.47140 * 270.02652 * 1 2 3 22 22 H 1.09002 * 109.46878 * 30.02334 * 1 2 3 23 23 H 1.08998 * 109.47389 * 150.02309 * 1 2 3 24 24 H 1.07999 * 120.38462 * 0.02562 * 3 2 1 25 25 H 1.08002 * 120.81416 * 180.25221 * 4 3 2 26 26 H 1.09001 * 109.46798 * 60.00447 * 7 6 5 27 27 H 1.08993 * 109.47318 * 299.99913 * 7 6 5 28 28 H 1.09001 * 109.46801 * 300.00369 * 8 7 6 29 29 H 1.09001 * 109.46998 * 59.99965 * 8 7 6 30 30 H 0.96997 * 119.99752 * 179.97438 * 12 11 9 31 31 H 1.09005 * 109.47272 * 210.00054 * 18 17 5 32 32 H 1.08994 * 109.47753 * 330.00150 * 18 17 5 33 33 H 1.00908 * 110.99849 * 56.04047 * 19 18 17 34 34 H 1.00894 * 111.00172 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1891 1.2026 0.0000 4 6 3.5744 1.1944 0.0053 5 6 4.2284 -0.0337 0.0000 6 8 5.5863 -0.0914 0.0000 7 6 6.2885 1.1531 -0.0006 8 6 7.7955 0.8883 -0.0011 9 6 8.5361 2.2007 -0.0024 10 1 7.9869 3.1307 -0.0023 11 6 9.9148 2.2143 -0.0025 12 7 10.5836 1.0819 -0.0021 13 14 10.8328 3.8411 -0.0033 14 1 11.0763 4.2728 1.3967 15 1 12.1320 3.6761 -0.7034 16 1 10.0201 4.8678 -0.7036 17 6 3.4747 -1.1982 0.0005 18 6 4.1690 -2.5357 0.0005 19 7 4.3951 -2.9701 1.3855 20 7 2.1573 -1.1470 0.0004 21 1 -0.3633 0.0005 1.0276 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3634 -0.8902 -0.5135 24 1 1.6482 2.1374 0.0004 25 1 4.1331 2.1187 0.0095 26 1 6.0196 1.7223 0.8892 27 1 6.0196 1.7216 -0.8908 28 1 8.0647 0.3195 0.8889 29 1 8.0641 0.3191 -0.8911 30 1 11.5535 1.0914 -0.0025 31 1 3.5463 -3.2683 -0.5130 32 1 5.1261 -2.4483 -0.5137 33 1 3.5287 -2.9966 1.9021 34 1 4.8594 -3.8654 1.4124 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085972421.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:14 Heat of formation + Delta-G solvation = -20.998943 kcal Electronic energy + Delta-G solvation = -16124.942220 eV Core-core repulsion = 13443.433337 eV Total energy + Delta-G solvation = -2681.508884 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.50345 -37.89459 -34.94912 -33.42054 -31.88570 -31.64419 -30.18001 -27.34347 -25.18229 -24.93018 -22.42525 -21.38648 -20.56290 -17.82845 -16.69181 -16.24651 -16.04727 -15.53411 -14.80189 -14.57782 -14.45987 -14.05597 -13.89811 -13.13399 -12.88310 -12.54775 -12.46158 -12.28960 -12.05835 -11.57992 -11.48924 -10.96177 -10.92004 -10.60497 -9.93940 -9.72199 -9.55275 -9.49453 -9.27344 -8.54206 -8.45761 -7.88342 -6.10990 -4.15874 1.23989 1.47488 3.26800 3.32698 3.35216 3.71628 3.83447 4.30482 4.40719 4.74062 4.87910 4.94602 5.12147 5.25459 5.27882 5.48859 5.54865 5.60973 5.68488 5.82962 5.96721 5.98718 6.04021 6.21087 6.36181 6.61794 6.68165 7.20347 7.45472 7.54679 7.63522 7.74072 7.95789 8.15822 8.22423 8.89533 9.48477 11.00486 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.035401 B = 0.005087 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.741618 B = 5502.919323 C = 6197.573641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.066 3.934 3 C -0.128 4.128 4 C -0.172 4.172 5 C 0.115 3.885 6 O -0.297 6.297 7 C 0.062 3.938 8 C 0.027 3.973 9 C -0.528 4.528 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.888 5.888 13 Si 0.898 3.102 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.273 1.273 17 C 0.091 3.909 18 C 0.125 3.875 19 N -0.838 5.838 20 N -0.448 5.448 21 H 0.070 0.930 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.132 0.868 25 H 0.142 0.858 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.030 0.970 29 H 0.028 0.972 30 H 0.263 0.737 31 H 0.040 0.960 32 H 0.094 0.906 33 H 0.339 0.661 34 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.716 -3.110 -0.012 17.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.072 4.072 3 C -0.148 4.148 4 C -0.199 4.199 5 C 0.065 3.935 6 O -0.208 6.208 7 C -0.012 4.012 8 C -0.010 4.010 9 C -0.566 4.566 10 H 0.076 0.924 11 C -0.141 4.141 12 N -0.526 5.526 13 Si 0.726 3.274 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.198 1.198 17 C -0.049 4.049 18 C -0.006 4.006 19 N -0.369 5.369 20 N -0.159 5.159 21 H 0.089 0.911 22 H 0.088 0.912 23 H 0.090 0.910 24 H 0.150 0.850 25 H 0.160 0.840 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.112 0.888 33 H 0.151 0.849 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.381 -3.465 0.033 16.743 hybrid contribution 0.428 1.262 -0.217 1.350 sum -15.953 -2.203 -0.184 16.106 Atomic orbital electron populations 1.20545 0.89066 1.02847 1.02470 1.20963 0.96675 0.88190 1.01324 1.21743 0.93903 0.99066 1.00061 1.21833 0.95372 0.98059 1.04600 1.19994 0.85406 0.93887 0.94230 1.86248 1.12991 1.35366 1.86155 1.23401 0.95731 0.82521 0.99545 1.19108 0.84835 0.98047 0.98999 1.20961 0.91375 0.91859 1.52395 0.92429 1.24979 0.97595 0.96646 0.94879 1.69976 1.07490 1.25576 1.49585 0.86494 0.79213 0.83477 0.78236 1.20474 1.21031 1.19796 1.20455 0.88175 0.93908 1.02369 1.20402 0.99187 0.90464 0.90506 1.58587 1.29375 1.35798 1.13102 1.67225 1.08008 1.29505 1.11171 0.91116 0.91208 0.91016 0.84999 0.84011 0.93090 0.93207 0.95173 0.95395 0.92687 0.94225 0.88795 0.84924 0.84269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.88 10.17 36.00 0.37 -0.52 16 2 C 0.07 0.90 6.78 -82.58 -0.56 0.34 16 3 C -0.13 -1.71 9.74 -39.46 -0.38 -2.09 16 4 C -0.17 -2.72 9.14 -39.14 -0.36 -3.07 16 5 C 0.12 2.07 6.67 -39.07 -0.26 1.81 16 6 O -0.30 -6.09 9.19 -19.46 -0.18 -6.27 16 7 C 0.06 1.33 4.70 37.16 0.17 1.50 16 8 C 0.03 0.71 5.34 -27.88 -0.15 0.56 16 9 C -0.53 -14.65 9.11 -34.44 -0.31 -14.96 16 10 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 13 Si 0.90 21.19 29.54 -169.99 -5.02 16.16 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 17 C 0.09 1.52 6.31 -82.42 -0.52 1.00 16 18 C 0.13 1.86 6.86 -4.98 -0.03 1.83 16 19 N -0.84 -11.54 9.61 -11.41 -0.11 -11.65 16 20 N -0.45 -6.96 10.18 -5.62 -0.06 -7.02 16 21 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 25 H 0.14 2.10 6.45 -52.49 -0.34 1.76 16 26 H 0.05 1.04 7.69 -51.93 -0.40 0.64 16 27 H 0.05 1.00 7.71 -51.93 -0.40 0.60 16 28 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 1.50 7.52 -51.93 -0.39 1.10 16 33 H 0.34 4.30 8.99 -39.29 -0.35 3.94 16 34 H 0.34 3.87 9.08 -39.29 -0.36 3.51 16 LS Contribution 293.72 15.07 4.43 4.43 Total: -1.00 -31.03 293.72 -7.07 -38.11 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -4.74 Total: 3.81 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -2.14 Total: -11.96 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.57 Total: -44.28 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.18 Total: -6.27 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.03 -7.07 -38.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085972421.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.107 kcal (2) G-P(sol) polarization free energy of solvation -31.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds