Wall clock time and date at job start Mon Mar 30 2020 03:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27725 * 3 2 1 5 5 H 1.48495 * 109.47159 * 0.27736 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27720 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 H 1.08995 * 109.48964 * 59.99760 * 9 7 2 11 11 C 1.53044 * 109.48832 * 180.02562 * 9 7 2 12 12 N 1.46964 * 109.36345 * 178.34342 * 11 9 7 13 13 C 1.46895 * 111.00090 * 176.82981 * 12 11 9 14 14 C 1.50701 * 109.47046 * 57.77762 * 13 12 11 15 15 C 1.34516 * 125.79096 * 89.71576 * 14 13 12 16 16 C 1.41378 * 106.84173 * 179.89313 * 15 14 13 17 17 C 1.34509 * 106.84145 * 0.36886 * 16 15 14 18 18 O 1.34301 * 108.42287 * 359.77486 * 17 16 15 19 19 C 1.46951 * 110.89938 * 300.71473 * 12 11 9 20 20 C 1.53054 * 109.36702 * 59.30636 * 19 12 11 21 21 N 1.46957 * 109.36194 * 301.59924 * 20 19 12 22 22 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 23 23 H 1.08994 * 109.49163 * 298.33216 * 11 9 7 24 24 H 1.08997 * 109.48881 * 58.40337 * 11 9 7 25 25 H 1.08994 * 109.47590 * 177.77577 * 13 12 11 26 26 H 1.09001 * 109.47122 * 297.78182 * 13 12 11 27 27 H 1.08004 * 126.57637 * 0.02562 * 15 14 13 28 28 H 1.08006 * 126.57909 * 180.16697 * 16 15 14 29 29 H 1.08002 * 125.78738 * 179.79009 * 17 16 15 30 30 H 1.08999 * 109.49177 * 299.33886 * 19 12 11 31 31 H 1.09005 * 109.49159 * 179.27512 * 19 12 11 32 32 H 1.09006 * 109.48680 * 181.62950 * 20 19 12 33 33 H 1.09001 * 109.48612 * 61.56666 * 20 19 12 34 34 H 1.00900 * 111.00289 * 295.44791 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6993 -1.2159 5 1 1.2843 2.7464 0.0068 6 1 3.1081 1.6934 1.2091 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 1 0.6205 -2.5551 -0.8932 11 6 2.2452 -3.6628 -0.0122 12 7 1.5082 -4.9336 0.0279 13 6 2.4263 -6.0774 -0.0527 14 6 3.4174 -6.0068 1.0803 15 6 3.2580 -6.5510 2.3001 16 6 4.4232 -6.2459 3.0403 17 6 5.2216 -5.5266 2.2312 18 8 4.6073 -5.3849 1.0454 19 6 0.6693 -5.0154 1.2317 20 6 -0.3249 -3.8518 1.2375 21 7 0.4122 -2.5810 1.1981 22 1 -0.4849 0.8401 0.0041 23 1 2.8487 -3.6205 -0.9188 24 1 2.8940 -3.5915 0.8607 25 1 1.8584 -7.0050 0.0187 26 1 2.9588 -6.0497 -1.0034 27 1 2.4044 -7.1148 2.6467 28 1 4.6310 -6.5325 4.0607 29 1 6.1922 -5.1305 2.4912 30 1 1.3000 -4.9593 2.1189 31 1 0.1242 -5.9594 1.2317 32 1 -0.9288 -3.8940 2.1440 33 1 -0.9735 -3.9233 0.3644 34 1 0.9650 -2.4575 2.0331 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220121769.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:20 Heat of formation + Delta-G solvation = 29.842786 kcal Electronic energy + Delta-G solvation = -17200.363839 eV Core-core repulsion = 14521.059618 eV Total energy + Delta-G solvation = -2679.304221 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.43122 -38.36688 -34.29746 -32.76269 -32.27852 -29.95100 -29.58906 -26.22581 -25.11068 -22.85787 -21.84231 -21.24032 -20.37607 -19.30404 -17.23020 -16.54778 -15.92832 -15.11299 -14.66450 -14.36866 -14.11107 -13.61844 -13.48953 -13.27366 -12.69509 -12.58065 -12.47487 -12.03586 -11.81538 -11.26847 -10.90267 -10.83910 -10.66077 -10.48918 -10.10119 -9.79180 -9.61602 -8.94419 -8.40970 -8.34233 -7.99094 -6.78407 -5.84797 -3.99441 1.88758 2.73854 3.19145 3.37005 3.41863 3.44070 4.38214 4.56140 4.86441 5.11755 5.14727 5.29946 5.37868 5.60640 5.72828 5.83170 5.90043 5.98808 6.05062 6.07522 6.22004 6.27993 6.40441 6.43148 6.62325 6.82489 6.85744 7.23883 7.37360 7.50183 7.73221 7.94546 8.26081 8.63070 8.96067 9.15396 9.69016 11.19783 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.028428 B = 0.007706 C = 0.006685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.706163 B = 3632.845134 C = 4187.185521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.084 3.916 3 Si 0.884 3.116 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.052 0.948 9 C 0.228 3.772 10 H 0.046 0.954 11 C 0.029 3.971 12 N -0.520 5.520 13 C 0.127 3.873 14 C -0.031 4.031 15 C -0.213 4.213 16 C -0.217 4.217 17 C -0.046 4.046 18 O -0.170 6.170 19 C 0.013 3.987 20 C 0.059 3.941 21 N -0.648 5.648 22 H 0.256 0.744 23 H 0.066 0.934 24 H 0.026 0.974 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.142 0.858 28 H 0.143 0.857 29 H 0.198 0.802 30 H 0.031 0.969 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.396 -12.284 3.943 13.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.123 4.123 3 Si 0.711 3.289 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.579 4.579 8 H 0.070 0.930 9 C 0.120 3.880 10 H 0.064 0.936 11 C -0.100 4.100 12 N -0.242 5.242 13 C -0.002 4.002 14 C -0.084 4.084 15 C -0.233 4.233 16 C -0.236 4.236 17 C -0.114 4.114 18 O -0.065 6.065 19 C -0.118 4.118 20 C -0.073 4.073 21 N -0.276 5.276 22 H 0.066 0.934 23 H 0.084 0.916 24 H 0.044 0.956 25 H 0.116 0.884 26 H 0.106 0.894 27 H 0.160 0.840 28 H 0.161 0.839 29 H 0.215 0.785 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.444 -11.637 2.964 12.804 hybrid contribution 1.857 0.125 1.401 2.329 sum 6.301 -11.512 4.365 13.830 Atomic orbital electron populations 1.70104 1.05646 1.25797 1.46517 1.24937 0.94620 0.98522 0.94177 0.86834 0.79759 0.83791 0.78481 1.20365 1.21330 1.20439 1.20870 0.92261 0.90206 1.54593 0.92957 1.19157 0.88727 0.89838 0.90269 0.93576 1.23152 0.97522 0.89446 0.99890 1.62645 1.20859 1.02526 1.38182 1.21080 0.89150 0.96358 0.93627 1.23830 0.86724 0.98082 0.99749 1.21567 1.00496 1.07094 0.94173 1.21767 0.95702 1.04871 1.01300 1.24001 0.99772 1.03580 0.84066 1.84114 1.27831 1.59800 1.34712 1.23051 0.96732 1.01090 0.90881 1.22089 0.95934 0.88249 1.00979 1.61058 1.32744 1.28482 1.05277 0.93369 0.91589 0.95613 0.88418 0.89400 0.83992 0.83870 0.78540 0.95044 0.91926 0.92358 0.91273 0.86598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.76 12.78 55.43 0.71 -24.05 16 2 C 0.08 2.37 5.39 -17.82 -0.10 2.27 16 3 Si 0.88 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.54 -14.98 8.69 -34.44 -0.30 -15.28 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.23 5.78 2.45 -68.81 -0.17 5.61 16 10 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 11 C 0.03 0.62 4.40 -3.77 -0.02 0.61 16 12 N -0.52 -9.52 4.92 -235.92 -1.16 -10.67 16 13 C 0.13 1.91 5.93 -4.98 -0.03 1.88 16 14 C -0.03 -0.49 4.87 -35.62 -0.17 -0.67 16 15 C -0.21 -3.08 9.46 -39.70 -0.38 -3.45 16 16 C -0.22 -2.92 10.91 -39.71 -0.43 -3.35 16 17 C -0.05 -0.63 12.09 29.41 0.36 -0.27 16 18 O -0.17 -2.81 10.06 5.70 0.06 -2.76 16 19 C 0.01 0.22 5.20 -3.77 -0.02 0.20 16 20 C 0.06 1.16 6.72 -3.77 -0.03 1.13 16 21 N -0.65 -15.54 5.88 -107.81 -0.63 -16.18 16 22 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 23 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 24 H 0.03 0.59 6.75 -51.93 -0.35 0.24 16 25 H 0.10 1.22 8.10 -51.93 -0.42 0.80 16 26 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.14 1.81 8.06 -52.48 -0.42 1.39 16 28 H 0.14 1.55 8.06 -52.48 -0.42 1.13 16 29 H 0.20 1.94 8.06 -52.49 -0.42 1.52 16 30 H 0.03 0.56 6.50 -51.93 -0.34 0.23 16 31 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.32 7.61 8.79 -39.29 -0.35 7.27 16 LS Contribution 279.77 15.07 4.22 4.22 Total: -1.00 -30.22 279.77 -7.91 -38.13 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -4.80 Total: 6.26 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -1.28 Total: -11.33 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: -1.09 Total: -50.90 kcal Atomic # 8 Polarization: -2.81 SS G_CDS: 0.06 Total: -2.76 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.22 -7.91 -38.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220121769.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.975 kcal (2) G-P(sol) polarization free energy of solvation -30.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds