Wall clock time and date at job start Mon Mar 30 2020 03:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00078 * 2 1 4 4 H 1.48493 * 109.47417 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47063 * 300.00557 * 3 2 1 6 6 H 1.48504 * 109.46844 * 59.99950 * 3 2 1 7 7 C 1.37874 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99974 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99781 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.48440 * 300.03984 * 9 7 2 11 11 C 1.53050 * 109.50705 * 60.09521 * 9 7 2 12 12 N 1.46961 * 109.35965 * 178.37852 * 11 9 7 13 13 C 1.46957 * 110.88145 * 300.67993 * 12 11 9 14 14 C 1.53048 * 109.36551 * 59.32074 * 13 12 11 15 15 N 1.46953 * 109.36529 * 301.60065 * 14 13 12 16 16 C 1.46903 * 111.00280 * 183.18914 * 15 14 13 17 17 C 1.50704 * 109.46973 * 46.19862 * 16 15 14 18 18 C 1.34515 * 125.79063 * 90.00036 * 17 16 15 19 19 C 1.41385 * 106.83992 * 180.02562 * 18 17 16 20 20 C 1.34512 * 106.83926 * 0.23220 * 19 18 17 21 21 O 1.34305 * 108.42433 * 359.63135 * 20 19 18 22 22 H 0.97001 * 119.99816 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.49083 * 298.34468 * 11 9 7 24 24 H 1.09000 * 109.48661 * 58.39218 * 11 9 7 25 25 H 1.00892 * 110.99847 * 64.54749 * 12 11 9 26 26 H 1.08993 * 109.48870 * 179.29321 * 13 12 11 27 27 H 1.09004 * 109.48681 * 299.35337 * 13 12 11 28 28 H 1.08998 * 109.48957 * 181.63237 * 14 13 12 29 29 H 1.08994 * 109.49107 * 61.56779 * 14 13 12 30 30 H 1.08996 * 109.47126 * 286.20119 * 16 15 14 31 31 H 1.09000 * 109.47165 * 166.19974 * 16 15 14 32 32 H 1.08001 * 126.57926 * 0.06103 * 18 17 16 33 33 H 1.08002 * 126.57514 * 179.97438 * 19 18 17 34 34 H 1.07998 * 125.78467 * 179.77218 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6234 -2.5574 0.8875 11 6 0.3730 -2.5812 -1.2527 12 7 -0.3306 -3.8714 -1.2702 13 6 0.6241 -4.9886 -1.2707 14 6 1.5020 -4.9065 -0.0197 15 7 2.2056 -3.6164 -0.0021 16 6 3.1178 -3.5298 1.1461 17 6 3.9128 -4.8057 1.2533 18 6 5.0984 -5.0456 0.6649 19 6 5.4792 -6.3571 1.0307 20 6 4.5011 -6.8420 1.8166 21 8 3.5573 -5.8962 1.9520 22 1 -0.4850 0.8401 0.0004 23 1 -0.3550 -1.7701 -1.2399 24 1 0.9978 -2.4952 -2.1417 25 1 -0.9719 -3.9440 -0.4948 26 1 0.0791 -5.9325 -1.2711 27 1 1.2517 -4.9303 -2.1600 28 1 2.2301 -5.7176 -0.0325 29 1 0.8773 -4.9921 0.8693 30 1 2.5403 -3.3839 2.0588 31 1 3.7973 -2.6889 1.0077 32 1 5.6532 -4.3665 0.0345 33 1 6.3804 -6.8724 0.7326 34 1 4.4797 -7.8244 2.2646 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220122004.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:11 Heat of formation + Delta-G solvation = 28.752943 kcal Electronic energy + Delta-G solvation = -17186.983197 eV Core-core repulsion = 14507.631717 eV Total energy + Delta-G solvation = -2679.351480 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.29782 -38.29908 -33.92742 -33.07558 -32.62842 -29.84873 -29.50704 -26.12272 -25.05284 -22.69109 -21.85110 -21.39222 -20.02079 -19.31527 -17.02472 -16.56859 -15.93202 -15.13302 -14.77184 -14.49400 -13.88665 -13.72152 -13.47269 -12.99427 -12.57561 -12.47994 -12.20606 -12.09090 -11.66624 -11.18042 -11.02808 -10.81315 -10.54991 -10.45728 -10.15604 -9.82673 -9.64678 -9.33684 -8.59955 -8.19994 -7.55792 -7.25675 -6.13041 -4.17222 2.00864 2.90093 3.24728 3.30193 3.33441 3.37117 4.33006 4.85381 5.00752 5.16817 5.28553 5.29775 5.34409 5.75089 5.86232 5.95093 5.98318 6.07108 6.21170 6.25492 6.29222 6.47286 6.56713 6.74676 6.79585 6.88109 7.15021 7.44307 7.52006 7.69267 7.83028 8.00400 8.04301 8.31590 8.45385 8.88082 9.47974 10.94212 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.025717 B = 0.008296 C = 0.006652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.509549 B = 3374.198965 C = 4208.383275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.510 4.510 8 H 0.065 0.935 9 C 0.187 3.813 10 H 0.000 1.000 11 C 0.066 3.934 12 N -0.697 5.697 13 C 0.064 3.936 14 C 0.019 3.981 15 N -0.524 5.524 16 C 0.143 3.857 17 C 0.009 3.991 18 C -0.207 4.207 19 C -0.213 4.213 20 C -0.059 4.059 21 O -0.181 6.181 22 H 0.263 0.737 23 H 0.108 0.892 24 H 0.057 0.943 25 H 0.328 0.672 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.019 0.981 30 H 0.041 0.959 31 H 0.110 0.890 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.662 -10.024 2.023 11.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.549 4.549 8 H 0.083 0.917 9 C 0.080 3.920 10 H 0.018 0.982 11 C -0.063 4.063 12 N -0.325 5.325 13 C -0.067 4.067 14 C -0.111 4.111 15 N -0.250 5.250 16 C 0.016 3.984 17 C -0.041 4.041 18 C -0.226 4.226 19 C -0.232 4.232 20 C -0.127 4.127 21 O -0.077 6.077 22 H 0.073 0.927 23 H 0.126 0.874 24 H 0.075 0.925 25 H 0.144 0.856 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.060 0.940 31 H 0.128 0.872 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 5.414 -9.867 1.048 11.303 hybrid contribution 0.613 0.694 1.643 1.886 sum 6.027 -9.173 2.690 11.301 Atomic orbital electron populations 1.69859 1.05913 1.26830 1.50382 1.24945 0.94932 0.99316 0.94804 0.86420 0.80054 0.83237 0.77611 1.19677 1.20853 1.21083 1.21097 0.93367 0.89391 1.51013 0.91683 1.20003 0.89668 0.87720 0.94658 0.98226 1.22327 0.97320 0.89146 0.97486 1.60954 1.18945 1.03800 1.48773 1.21989 0.93516 0.94214 0.96958 1.22818 0.97078 0.93243 0.98004 1.62456 1.20696 1.02572 1.39315 1.20596 0.95278 0.88865 0.93696 1.22862 0.96389 0.88951 0.95939 1.21558 0.97801 0.97691 1.05598 1.21788 1.01434 0.96557 1.03444 1.23882 0.89668 0.94523 1.04578 1.84065 1.43682 1.21830 1.58140 0.92720 0.87379 0.92481 0.85635 0.92020 0.90948 0.91910 0.96250 0.94039 0.87179 0.83554 0.83956 0.78763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.42 11.35 55.43 0.63 -23.79 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 3 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -13.38 8.02 -34.44 -0.28 -13.66 16 8 H 0.07 1.70 6.50 -52.49 -0.34 1.36 16 9 C 0.19 4.57 1.90 -68.81 -0.13 4.43 16 10 H 0.00 0.01 8.14 -51.93 -0.42 -0.42 16 11 C 0.07 1.57 5.76 -3.76 -0.02 1.55 16 12 N -0.70 -14.27 6.91 -113.64 -0.79 -15.05 16 13 C 0.06 1.17 6.72 -3.77 -0.03 1.15 16 14 C 0.02 0.36 5.06 -3.77 -0.02 0.34 16 15 N -0.52 -11.27 4.66 -229.32 -1.07 -12.34 16 16 C 0.14 2.84 5.24 -4.97 -0.03 2.82 16 17 C 0.01 0.16 5.02 -35.62 -0.18 -0.02 16 18 C -0.21 -3.32 10.81 -39.70 -0.43 -3.75 16 19 C -0.21 -2.90 10.91 -39.70 -0.43 -3.33 16 20 C -0.06 -0.78 12.09 29.42 0.36 -0.42 16 21 O -0.18 -3.02 9.93 5.70 0.06 -2.96 16 22 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 23 H 0.11 2.83 6.13 -51.93 -0.32 2.51 16 24 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 25 H 0.33 6.50 8.89 -39.30 -0.35 6.15 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.06 1.17 6.22 -51.93 -0.32 0.84 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 31 H 0.11 2.22 6.68 -51.93 -0.35 1.87 16 32 H 0.15 2.23 8.06 -52.49 -0.42 1.80 16 33 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.20 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 276.23 15.07 4.16 4.16 Total: -1.00 -27.78 276.23 -7.92 -35.70 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -4.62 Total: 7.99 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -1.28 Total: -9.34 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: -1.23 Total: -51.18 kcal Atomic # 8 Polarization: -3.02 SS G_CDS: 0.06 Total: -2.96 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.78 -7.92 -35.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220122004.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.449 kcal (2) G-P(sol) polarization free energy of solvation -27.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds