Wall clock time and date at job start Mon Mar 30 2020 03:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00296 * 2 1 4 4 H 1.48497 * 109.47311 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46800 * 300.00391 * 3 2 1 6 6 H 1.48500 * 109.46710 * 60.00035 * 3 2 1 7 7 C 1.37886 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99433 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00106 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.48769 * 59.95973 * 9 7 2 11 11 C 1.53046 * 109.50661 * 299.90211 * 9 7 2 12 12 N 1.46957 * 109.38065 * 181.63152 * 11 9 7 13 13 C 1.46956 * 110.88202 * 59.28891 * 12 11 9 14 14 C 1.53049 * 109.37889 * 300.71439 * 13 12 11 15 15 N 1.46955 * 109.48652 * 179.97438 * 9 7 2 16 16 C 1.46896 * 111.00423 * 303.17941 * 15 9 7 17 17 C 1.50698 * 109.47514 * 170.15480 * 16 15 9 18 18 C 1.34520 * 125.78943 * 89.99416 * 17 16 15 19 19 C 1.41387 * 106.83865 * 180.02562 * 18 17 16 20 20 C 1.34512 * 106.84014 * 0.02562 * 19 18 17 21 21 O 1.34301 * 108.42328 * 359.73855 * 20 19 18 22 22 H 0.97000 * 119.99936 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.49193 * 301.59153 * 11 9 7 24 24 H 1.09002 * 109.49198 * 61.63418 * 11 9 7 25 25 H 1.00901 * 110.98799 * 295.43214 * 12 11 9 26 26 H 1.09002 * 109.49189 * 180.73281 * 13 12 11 27 27 H 1.09002 * 109.48707 * 60.69040 * 13 12 11 28 28 H 1.09005 * 109.48797 * 178.36083 * 14 13 12 29 29 H 1.08999 * 109.49048 * 298.39592 * 14 13 12 30 30 H 1.09001 * 109.46837 * 290.15725 * 16 15 9 31 31 H 1.08999 * 109.46902 * 50.15299 * 16 15 9 32 32 H 1.07997 * 126.57631 * 359.97145 * 18 17 16 33 33 H 1.07997 * 126.57868 * 179.97438 * 19 18 17 34 34 H 1.07998 * 125.78795 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6233 -2.5567 -0.8899 11 6 0.3731 -2.5824 1.2504 12 7 -0.3305 -3.8725 1.2674 13 6 0.6240 -4.9898 1.2663 14 6 1.5020 -4.9065 0.0154 15 7 2.2056 -3.6165 -0.0018 16 6 3.1173 -3.5288 -1.1502 17 6 4.2243 -4.5388 -0.9912 18 6 4.2029 -5.8067 -1.4404 19 6 5.4371 -6.3916 -1.0748 20 6 6.1386 -5.4464 -0.4237 21 8 5.4013 -4.3247 -0.3808 22 1 -0.4850 0.8400 0.0004 23 1 0.9979 -2.4975 2.1394 24 1 -0.3547 -1.7711 1.2386 25 1 -0.9722 -3.9444 0.4920 26 1 0.0790 -5.9338 1.2659 27 1 1.2517 -4.9327 2.1556 28 1 2.2299 -5.7178 0.0273 29 1 0.8772 -4.9918 -0.8737 30 1 2.5665 -3.7348 -2.0679 31 1 3.5439 -2.5269 -1.1997 32 1 3.3972 -6.2860 -1.9764 33 1 5.7553 -7.4033 -1.2785 34 1 7.1288 -5.5675 -0.0100 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220122073.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:14 Heat of formation + Delta-G solvation = 29.094577 kcal Electronic energy + Delta-G solvation = -17158.599783 eV Core-core repulsion = 14479.263117 eV Total energy + Delta-G solvation = -2679.336666 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.20567 -38.33038 -33.95556 -33.12356 -32.50687 -29.83936 -29.51423 -26.14075 -25.09581 -22.61350 -21.89322 -21.29330 -20.01622 -19.36668 -16.97171 -16.54228 -15.86420 -15.12517 -14.84306 -14.32901 -13.95845 -13.75742 -13.38810 -13.13474 -12.61068 -12.48876 -12.38794 -11.98664 -11.65187 -11.08003 -10.99220 -10.82540 -10.55552 -10.47603 -10.10617 -9.78450 -9.63500 -9.29333 -8.59269 -8.15695 -7.59397 -7.26854 -6.12924 -4.16689 2.07307 2.88767 3.25413 3.34022 3.37900 3.38902 4.33840 4.82688 5.07817 5.16362 5.28695 5.29858 5.37144 5.71961 5.82389 5.88565 5.98344 6.08048 6.18173 6.22693 6.26373 6.49328 6.55130 6.74679 6.78332 6.91066 7.14727 7.46680 7.56087 7.69386 7.82638 8.00866 8.04476 8.31543 8.46121 8.89035 9.48359 10.94244 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.022886 B = 0.008868 C = 0.006762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.142549 B = 3156.785857 C = 4139.735391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.282 1.282 7 C -0.510 4.510 8 H 0.066 0.934 9 C 0.188 3.812 10 H 0.000 1.000 11 C 0.066 3.934 12 N -0.697 5.697 13 C 0.064 3.936 14 C 0.013 3.987 15 N -0.525 5.525 16 C 0.130 3.870 17 C 0.028 3.972 18 C -0.229 4.229 19 C -0.215 4.215 20 C -0.056 4.056 21 O -0.167 6.167 22 H 0.263 0.737 23 H 0.056 0.944 24 H 0.108 0.892 25 H 0.328 0.672 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.019 0.981 30 H 0.053 0.947 31 H 0.107 0.893 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.854 -9.669 -1.901 11.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.208 1.208 7 C -0.549 4.549 8 H 0.084 0.916 9 C 0.081 3.919 10 H 0.018 0.982 11 C -0.063 4.063 12 N -0.325 5.325 13 C -0.067 4.067 14 C -0.117 4.117 15 N -0.251 5.251 16 C 0.003 3.997 17 C -0.023 4.023 18 C -0.249 4.249 19 C -0.234 4.234 20 C -0.124 4.124 21 O -0.062 6.062 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.126 0.874 25 H 0.143 0.857 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.125 0.875 32 H 0.158 0.842 33 H 0.159 0.841 34 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 5.956 -9.211 -0.622 10.987 hybrid contribution 0.389 0.471 -1.802 1.902 sum 6.345 -8.740 -2.424 11.069 Atomic orbital electron populations 1.69858 1.05894 1.26828 1.50420 1.24939 0.94928 0.99294 0.94797 0.86426 0.80132 0.83224 0.77614 1.19645 1.21069 1.20836 1.21124 0.93402 0.89412 1.50953 0.91580 1.19945 0.89651 0.87676 0.94627 0.98212 1.22325 0.97306 0.89145 0.97501 1.60955 1.18933 1.03812 1.48777 1.21982 0.93501 0.94208 0.96995 1.22898 0.97101 0.93665 0.98027 1.62137 1.20546 1.02536 1.39905 1.20503 0.88990 0.97411 0.92811 1.22817 0.86361 0.96647 0.96491 1.21522 0.99761 0.94718 1.08877 1.21714 0.95833 1.00745 1.05139 1.23914 0.98370 0.84731 1.05378 1.84081 1.24946 1.36250 1.60884 0.92727 0.92527 0.87365 0.85650 0.91964 0.91000 0.91445 0.96279 0.92916 0.87495 0.84191 0.84081 0.78724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.41 11.35 55.43 0.63 -23.78 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 3 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -13.51 7.80 -34.44 -0.27 -13.78 16 8 H 0.07 1.77 6.51 -52.49 -0.34 1.43 16 9 C 0.19 4.58 1.94 -68.81 -0.13 4.45 16 10 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 11 C 0.07 1.57 5.76 -3.77 -0.02 1.55 16 12 N -0.70 -14.11 6.91 -113.64 -0.79 -14.90 16 13 C 0.06 1.15 6.72 -3.77 -0.03 1.13 16 14 C 0.01 0.25 5.36 -3.77 -0.02 0.23 16 15 N -0.53 -11.28 4.51 -229.33 -1.03 -12.31 16 16 C 0.13 2.59 5.29 -4.98 -0.03 2.57 16 17 C 0.03 0.51 6.23 -35.62 -0.22 0.29 16 18 C -0.23 -3.59 9.32 -39.70 -0.37 -3.96 16 19 C -0.22 -2.96 10.91 -39.70 -0.43 -3.40 16 20 C -0.06 -0.78 12.09 29.42 0.36 -0.43 16 21 O -0.17 -2.99 10.65 5.71 0.06 -2.93 16 22 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 23 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 24 H 0.11 2.83 6.13 -51.93 -0.32 2.51 16 25 H 0.33 6.37 8.89 -39.29 -0.35 6.02 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.07 1.17 6.14 -51.93 -0.32 0.85 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 1.00 8.12 -51.93 -0.42 0.58 16 31 H 0.11 2.30 5.99 -51.93 -0.31 1.99 16 32 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 33 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 34 H 0.20 1.89 8.06 -52.49 -0.42 1.46 16 LS Contribution 275.97 15.07 4.16 4.16 Total: -1.00 -28.05 275.97 -7.83 -35.88 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -4.58 Total: 7.85 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -1.26 Total: -9.78 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -1.19 Total: -50.99 kcal Atomic # 8 Polarization: -2.99 SS G_CDS: 0.06 Total: -2.93 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.05 -7.83 -35.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220122073.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.971 kcal (2) G-P(sol) polarization free energy of solvation -28.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds