Wall clock time and date at job start Mon Mar 30 2020 03:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35450 * 126.77809 * 2 1 4 4 C 1.41379 * 103.98886 * 180.02562 * 3 2 1 5 5 C 1.50694 * 126.80265 * 179.97438 * 4 3 2 6 6 H 1.09006 * 109.45311 * 245.02908 * 5 4 3 7 7 C 1.53035 * 109.46295 * 125.05687 * 5 4 3 8 8 C 1.53122 * 109.27869 * 180.80234 * 7 5 4 9 9 H 1.08999 * 109.57539 * 297.71436 * 8 7 5 10 10 C 1.50697 * 109.52085 * 177.55545 * 8 7 5 11 11 H 1.07998 * 120.00471 * 268.57904 * 10 8 7 12 12 C 1.37883 * 119.99909 * 88.58028 * 10 8 7 13 13 N 1.31509 * 119.99789 * 353.32279 * 12 10 8 14 14 Si 1.86798 * 120.00082 * 173.31844 * 12 10 8 15 15 H 1.48505 * 109.47004 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47203 * 239.99847 * 14 12 10 17 17 H 1.48506 * 109.46913 * 119.99822 * 14 12 10 18 18 C 1.53119 * 109.15928 * 57.65219 * 8 7 5 19 19 C 1.53032 * 109.28131 * 302.34613 * 18 8 7 20 20 N 1.46844 * 109.52502 * 59.17586 * 19 18 8 21 21 N 1.30175 * 106.39186 * 0.26151 * 4 3 2 22 22 O 1.20920 * 111.60720 * 359.53731 * 21 4 3 23 23 H 1.09007 * 109.46823 * 90.00535 * 1 2 3 24 24 H 1.09003 * 109.47106 * 210.00320 * 1 2 3 25 25 H 1.08994 * 109.47239 * 330.00494 * 1 2 3 26 26 H 1.08006 * 128.00227 * 359.97438 * 3 2 1 27 27 H 1.08999 * 109.50405 * 60.85927 * 7 5 4 28 28 H 1.09000 * 109.49872 * 300.74252 * 7 5 4 29 29 H 0.97005 * 119.99916 * 354.56569 * 13 12 10 30 30 H 1.09009 * 109.50219 * 62.28948 * 18 8 7 31 31 H 1.09002 * 109.50332 * 182.36164 * 18 8 7 32 32 H 1.08997 * 109.46714 * 179.19587 * 19 18 8 33 33 H 1.09001 * 109.45949 * 299.16481 * 19 18 8 34 34 H 1.00907 * 110.99931 * 62.36230 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5373 -0.0006 5 6 4.9211 1.3000 -0.0014 6 1 5.4533 1.1094 -0.9334 7 6 5.7810 0.8435 1.1793 8 6 7.0916 1.6352 1.1862 9 1 7.6484 1.4276 0.2724 10 6 7.9168 1.2327 2.3811 11 1 7.8212 1.7742 3.3106 12 6 8.7940 0.1729 2.2878 13 7 8.8165 -0.5683 1.2018 14 14 9.9504 -0.2099 3.7040 15 1 9.7283 0.7653 4.8018 16 1 11.3560 -0.1159 3.2346 17 1 9.6855 -1.5837 4.2018 18 6 6.7747 3.1312 1.2636 19 6 5.8860 3.5214 0.0805 20 7 4.6451 2.7373 0.1191 21 7 3.4764 -0.7564 -0.0066 22 8 2.3096 -1.0736 -0.0006 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5137 26 1 2.0345 2.1271 -0.0004 27 1 5.9987 -0.2200 1.0813 28 1 5.2436 1.0212 2.1109 29 1 8.1639 -0.4197 0.4996 30 1 6.2530 3.3448 2.1967 31 1 7.7025 3.7022 1.2266 32 1 5.6467 4.5831 0.1405 33 1 6.4137 3.3204 -0.8519 34 1 4.1181 2.9353 0.9566 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259759321.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:59 Heat of formation + Delta-G solvation = 40.464762 kcal Electronic energy + Delta-G solvation = -16855.242550 eV Core-core repulsion = 14176.398933 eV Total energy + Delta-G solvation = -2678.843617 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.63403 -38.41499 -34.25571 -33.34321 -33.07551 -30.21204 -29.74880 -27.67272 -24.97953 -23.62006 -22.54050 -21.73421 -19.68926 -19.58521 -17.32460 -17.16975 -16.62401 -15.08853 -14.45120 -14.12762 -13.74522 -13.71257 -13.52215 -13.40951 -13.32456 -12.64717 -12.39107 -12.02259 -11.81022 -11.24326 -11.02990 -10.81858 -10.66558 -10.64255 -10.13549 -9.81016 -9.67597 -9.32815 -9.08442 -8.76472 -8.39870 -7.75974 -6.35208 -4.07601 1.71402 2.57658 3.34050 3.43194 3.46661 3.59978 4.22401 4.52047 4.63501 4.95753 5.15833 5.28051 5.33533 5.41035 5.50121 5.53817 5.74509 5.85486 5.89700 5.96860 6.03834 6.09672 6.28039 6.39567 6.46363 6.73620 6.84220 6.94315 7.24272 7.46588 7.60398 7.69174 8.21872 8.44164 8.62489 8.86928 9.64699 11.02458 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.030396 B = 0.006703 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.954554 B = 4176.093026 C = 4803.871873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.055 4.055 3 C -0.215 4.215 4 C 0.036 3.964 5 C 0.158 3.842 6 H 0.091 0.909 7 C -0.127 4.127 8 C 0.032 3.968 9 H 0.033 0.967 10 C -0.594 4.594 11 H 0.048 0.952 12 C 0.021 3.979 13 N -0.910 5.910 14 Si 1.069 2.931 15 H -0.290 1.290 16 H -0.286 1.286 17 H -0.288 1.288 18 C -0.141 4.141 19 C 0.058 3.942 20 N -0.678 5.678 21 N -0.360 5.360 22 O 0.095 5.905 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.170 0.830 27 H 0.063 0.937 28 H 0.045 0.955 29 H 0.271 0.729 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.703 4.871 -2.533 15.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.119 4.119 3 C -0.236 4.236 4 C -0.123 4.123 5 C 0.047 3.953 6 H 0.109 0.891 7 C -0.167 4.167 8 C 0.014 3.986 9 H 0.051 0.949 10 C -0.632 4.632 11 H 0.066 0.934 12 C -0.184 4.184 13 N -0.545 5.545 14 Si 0.898 3.102 15 H -0.216 1.216 16 H -0.212 1.212 17 H -0.215 1.215 18 C -0.180 4.180 19 C -0.072 4.072 20 N -0.307 5.307 21 N -0.064 5.064 22 O 0.028 5.972 23 H 0.102 0.898 24 H 0.098 0.902 25 H 0.106 0.894 26 H 0.188 0.812 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.731 2.932 -2.770 13.354 hybrid contribution -1.216 1.544 0.499 2.028 sum -13.947 4.476 -2.271 14.822 Atomic orbital electron populations 1.20241 0.84487 1.04210 1.03641 1.24475 0.96228 0.86728 1.04462 1.22338 0.91164 1.00754 1.09348 1.23672 0.97425 0.89779 1.01435 1.19964 0.88039 0.86268 1.00990 0.89118 1.22466 0.97603 1.02051 0.94619 1.18893 0.91843 0.89586 0.98321 0.94916 1.21953 1.25580 1.17815 0.97890 0.93406 1.25818 0.98312 0.92995 1.01268 1.70720 1.36941 1.39108 1.07754 0.83552 0.76115 0.75810 0.74712 1.21583 1.21195 1.21478 1.22279 0.99000 0.99948 0.96782 1.22061 0.89613 0.96328 0.99169 1.60733 1.20979 1.04994 1.43965 1.73855 0.96253 1.16423 1.19852 1.84837 1.11402 1.33146 1.67803 0.89843 0.90197 0.89402 0.81203 0.91844 0.93629 0.91729 0.93440 0.92419 0.91567 0.91435 0.84802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.45 36.01 0.38 -0.15 16 2 C -0.06 -0.72 7.49 -35.30 -0.26 -0.99 16 3 C -0.21 -3.11 10.22 -39.38 -0.40 -3.52 16 4 C 0.04 0.66 6.49 -82.10 -0.53 0.13 16 5 C 0.16 3.06 2.97 -68.88 -0.20 2.86 16 6 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 7 C -0.13 -2.94 4.52 -26.65 -0.12 -3.06 16 8 C 0.03 0.80 1.79 -91.65 -0.16 0.64 16 9 H 0.03 0.88 6.99 -51.93 -0.36 0.52 16 10 C -0.59 -16.72 8.31 -34.44 -0.29 -17.01 16 11 H 0.05 1.35 7.82 -52.49 -0.41 0.94 16 12 C 0.02 0.60 5.45 -17.82 -0.10 0.50 16 13 N -0.91 -27.87 13.55 55.43 0.75 -27.12 16 14 Si 1.07 25.68 29.91 -169.99 -5.08 20.59 16 15 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 C -0.14 -2.87 5.34 -26.65 -0.14 -3.01 16 19 C 0.06 0.97 6.55 -3.84 -0.03 0.94 16 20 N -0.68 -11.24 6.02 -108.00 -0.65 -11.89 16 21 N -0.36 -7.04 12.06 33.42 0.40 -6.64 16 22 O 0.09 1.57 11.20 17.17 0.19 1.76 16 23 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.17 2.06 8.02 -52.48 -0.42 1.64 16 27 H 0.06 1.67 7.67 -51.93 -0.40 1.27 16 28 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.27 8.30 6.37 -40.82 -0.26 8.04 16 30 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.34 5.23 8.56 -39.29 -0.34 4.89 16 LS Contribution 282.35 15.07 4.25 4.25 Total: -1.00 -31.62 282.35 -6.79 -38.41 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.79 Total: 3.30 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -1.86 Total: -22.67 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.50 Total: -45.65 kcal Atomic # 8 Polarization: 1.57 SS G_CDS: 0.19 Total: 1.76 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.08 Total: 20.59 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.62 -6.79 -38.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259759321.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.872 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds