Wall clock time and date at job start Mon Mar 30 2020 03:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30795 * 1 3 3 Si 1.86808 * 119.99690 * 2 1 4 4 H 1.48503 * 109.47010 * 240.00010 * 3 2 1 5 5 H 1.48500 * 109.46848 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47005 * 120.00172 * 3 2 1 7 7 C 1.40169 * 120.00414 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00151 * 180.02562 * 7 2 1 9 9 C 1.39852 * 119.99809 * 359.97438 * 7 2 1 10 10 C 1.39415 * 126.87243 * 359.97438 * 9 7 2 11 11 N 1.33324 * 107.08352 * 179.97438 * 10 9 7 12 12 C 1.30804 * 109.25037 * 0.02562 * 11 10 9 13 13 C 1.50698 * 125.15219 * 180.02562 * 12 11 10 14 14 C 1.52998 * 109.47438 * 90.01622 * 13 12 11 15 15 H 1.09009 * 109.45350 * 54.97575 * 14 13 12 16 16 C 1.53032 * 109.46482 * 174.94468 * 14 13 12 17 17 C 1.53123 * 109.28121 * 179.19636 * 16 14 13 18 18 C 1.53124 * 109.16220 * 302.35028 * 17 16 14 19 19 C 1.53035 * 109.27475 * 57.64849 * 18 17 16 20 20 N 1.46846 * 109.52744 * 300.82106 * 19 18 17 21 21 O 1.34017 * 109.69313 * 0.25928 * 12 11 10 22 22 H 0.97000 * 120.00526 * 0.02562 * 1 2 3 23 23 H 1.08007 * 126.46022 * 359.97438 * 10 9 7 24 24 H 1.09004 * 109.47402 * 330.02264 * 13 12 11 25 25 H 1.08991 * 109.47383 * 210.01966 * 13 12 11 26 26 H 1.09001 * 109.50949 * 299.14218 * 16 14 13 27 27 H 1.09005 * 109.50313 * 59.22075 * 16 14 13 28 28 H 1.09001 * 109.51952 * 62.25288 * 17 16 14 29 29 H 1.09002 * 109.52604 * 182.38110 * 17 16 14 30 30 H 1.08993 * 109.50112 * 297.71243 * 18 17 16 31 31 H 1.08992 * 109.50394 * 177.58991 * 18 17 16 32 32 H 1.09008 * 109.45841 * 180.80263 * 19 18 17 33 33 H 1.09003 * 109.46290 * 60.84246 * 19 18 17 34 34 H 1.00895 * 111.00020 * 297.64567 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6179 0.0000 4 1 3.0957 1.6965 -1.2125 5 1 1.2768 2.7465 -0.0006 6 1 3.0956 1.6965 1.2124 7 6 2.0089 -1.2138 -0.0005 8 1 3.0889 -1.2138 -0.0001 9 6 1.3097 -2.4250 -0.0005 10 6 -0.0745 -2.5919 0.0005 11 7 -0.3108 -3.9040 -0.0005 12 6 0.8282 -4.5473 -0.0015 13 6 0.9776 -6.0469 -0.0033 14 6 1.0284 -6.5527 -1.4464 15 1 1.8229 -6.0355 -1.9846 16 6 1.3062 -8.0576 -1.4498 17 6 1.3362 -8.5629 -2.8949 18 6 0.0020 -8.2335 -3.5704 19 6 -0.2379 -6.7235 -3.5054 20 7 -0.2587 -6.2897 -2.1026 21 8 1.8419 -3.6708 0.0045 22 1 -0.4851 0.8400 -0.0004 23 1 -0.8157 -1.8063 0.0018 24 1 0.1280 -6.4974 0.5098 25 1 1.8991 -6.3208 0.5103 26 1 2.2689 -8.2511 -0.9766 27 1 0.5198 -8.5741 -0.8994 28 1 2.1479 -8.0750 -3.4346 29 1 1.4918 -9.6417 -2.9005 30 1 -0.8052 -8.7527 -3.0539 31 1 0.0330 -8.5526 -4.6121 32 1 -1.1938 -6.4872 -3.9729 33 1 0.5625 -6.2055 -4.0339 34 1 -1.0167 -6.7267 -1.6002 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260956077.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:41 Heat of formation + Delta-G solvation = -11.255689 kcal Electronic energy + Delta-G solvation = -16627.576943 eV Core-core repulsion = 13946.490558 eV Total energy + Delta-G solvation = -2681.086384 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.80339 -38.68380 -33.98921 -33.05646 -32.22095 -31.41851 -29.08759 -27.29763 -24.14994 -23.09153 -21.53325 -20.60392 -20.17319 -19.19516 -17.46107 -15.56347 -15.36190 -14.88911 -14.86915 -14.36576 -14.34547 -13.92027 -13.37741 -12.89681 -12.60284 -12.00217 -11.94099 -11.78829 -11.48620 -11.32507 -11.21967 -10.87651 -10.81522 -10.54208 -10.50101 -10.35050 -10.17231 -9.52004 -9.22018 -8.46456 -7.86912 -7.12844 -6.79072 -4.39482 2.90255 3.02968 3.06619 3.49137 3.82904 4.49279 4.53313 4.76329 4.86822 4.98394 5.04886 5.24391 5.29060 5.50108 5.55566 5.64267 5.75781 5.85205 6.00445 6.02250 6.04849 6.15207 6.17515 6.30587 6.37455 6.58401 6.99793 7.37293 7.45219 7.65255 7.74983 7.82715 8.33009 8.51027 8.72934 8.87136 9.96612 10.16449 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.047250 B = 0.005356 C = 0.005292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.448272 B = 5226.332890 C = 5289.476831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.069 3.931 3 Si 0.938 3.062 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.426 4.426 8 H 0.081 0.919 9 C 0.137 3.863 10 C -0.171 4.171 11 N -0.442 5.442 12 C 0.032 3.968 13 C 0.014 3.986 14 C 0.094 3.906 15 H 0.079 0.921 16 C -0.153 4.153 17 C -0.118 4.118 18 C -0.158 4.158 19 C 0.059 3.941 20 N -0.662 5.662 21 O -0.248 6.248 22 H 0.284 0.716 23 H 0.190 0.810 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.431 -10.508 -4.082 11.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.149 4.149 3 Si 0.762 3.238 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.456 4.456 8 H 0.099 0.901 9 C 0.085 3.915 10 C -0.316 4.316 11 N -0.170 5.170 12 C -0.167 4.167 13 C -0.024 4.024 14 C -0.017 4.017 15 H 0.097 0.903 16 C -0.193 4.193 17 C -0.155 4.155 18 C -0.198 4.198 19 C -0.071 4.071 20 N -0.290 5.290 21 O -0.140 6.140 22 H 0.095 0.905 23 H 0.206 0.794 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.843 -10.049 -4.218 10.931 hybrid contribution 0.994 0.108 0.011 1.000 sum 1.837 -9.941 -4.207 10.950 Atomic orbital electron populations 1.69595 1.07511 1.29304 1.35287 1.25791 0.95027 1.01166 0.92896 0.85878 0.79418 0.78612 0.79907 1.18862 1.19997 1.18855 1.18288 0.94618 0.87030 1.45708 0.90124 1.20661 0.92958 0.81571 0.96332 1.24112 0.94981 0.90956 1.21582 1.69548 1.27456 1.06965 1.13047 1.24289 0.81222 0.92411 1.18819 1.19441 1.01961 0.85879 0.95149 1.21629 0.92650 0.92055 0.95406 0.90307 1.22328 1.02208 0.98090 0.96651 1.21536 0.97653 1.00222 0.96130 1.22304 0.97665 0.99195 1.00609 1.22002 1.02056 0.91918 0.91158 1.60464 1.04367 1.62518 1.01684 1.84279 1.38012 1.16661 1.75029 0.90483 0.79399 0.90265 0.91002 0.91488 0.91995 0.92003 0.92446 0.92240 0.91999 0.91062 0.91322 0.84299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.82 10.32 55.56 0.57 -20.25 16 2 C 0.07 1.76 5.50 -17.27 -0.09 1.66 16 3 Si 0.94 18.89 29.56 -169.99 -5.03 13.86 16 4 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.43 -11.91 9.45 -38.25 -0.36 -12.27 16 8 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 9 C 0.14 4.06 7.08 -38.54 -0.27 3.79 16 10 C -0.17 -5.05 10.89 -16.47 -0.18 -5.23 16 11 N -0.44 -12.17 11.23 -10.02 -0.11 -12.28 16 12 C 0.03 0.82 7.27 -12.72 -0.09 0.72 16 13 C 0.01 0.26 5.47 -27.89 -0.15 0.11 16 14 C 0.09 1.51 2.41 -67.73 -0.16 1.35 16 15 H 0.08 1.43 8.14 -51.92 -0.42 1.01 16 16 C -0.15 -1.88 5.36 -26.65 -0.14 -2.02 16 17 C -0.12 -1.31 6.00 -26.60 -0.16 -1.47 16 18 C -0.16 -1.75 6.08 -26.65 -0.16 -1.91 16 19 C 0.06 0.81 6.55 -3.84 -0.03 0.78 16 20 N -0.66 -11.00 6.22 -106.76 -0.66 -11.66 16 21 O -0.25 -6.95 10.81 3.12 0.03 -6.91 16 22 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 23 H 0.19 5.67 5.76 -52.48 -0.30 5.37 16 24 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 25 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.34 5.28 8.79 -39.29 -0.35 4.93 16 LS Contribution 281.79 15.07 4.25 4.25 Total: -1.00 -30.80 281.79 -7.60 -38.40 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -4.84 Total: 9.08 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -1.81 Total: -14.48 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: -0.20 Total: -44.19 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: 0.03 Total: -6.91 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.80 -7.60 -38.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260956077.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.146 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds