Wall clock time and date at job start Mon Mar 30 2020 03:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30795 * 1 3 3 Si 1.86808 * 119.99690 * 2 1 4 4 H 1.48503 * 109.47010 * 240.00010 * 3 2 1 5 5 H 1.48500 * 109.46848 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47005 * 120.00172 * 3 2 1 7 7 C 1.40169 * 120.00414 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00151 * 180.02562 * 7 2 1 9 9 C 1.39852 * 119.99809 * 359.97438 * 7 2 1 10 10 C 1.39415 * 126.87243 * 359.97438 * 9 7 2 11 11 N 1.33324 * 107.08352 * 179.97438 * 10 9 7 12 12 C 1.30804 * 109.25037 * 0.02562 * 11 10 9 13 13 C 1.50698 * 125.15219 * 180.02562 * 12 11 10 14 14 C 1.52998 * 109.47438 * 90.01622 * 13 12 11 15 15 H 1.09009 * 109.45350 * 54.97575 * 14 13 12 16 16 C 1.53032 * 109.46482 * 174.94468 * 14 13 12 17 17 C 1.53123 * 109.28121 * 179.19636 * 16 14 13 18 18 C 1.53124 * 109.16220 * 302.35028 * 17 16 14 19 19 C 1.53035 * 109.27475 * 57.64849 * 18 17 16 20 20 N 1.46846 * 109.52744 * 300.82106 * 19 18 17 21 21 O 1.34017 * 109.69313 * 0.25928 * 12 11 10 22 22 H 0.97000 * 120.00526 * 0.02562 * 1 2 3 23 23 H 1.08007 * 126.46022 * 359.97438 * 10 9 7 24 24 H 1.09004 * 109.47402 * 330.02264 * 13 12 11 25 25 H 1.08991 * 109.47383 * 210.01966 * 13 12 11 26 26 H 1.09001 * 109.50949 * 299.14218 * 16 14 13 27 27 H 1.09005 * 109.50313 * 59.22075 * 16 14 13 28 28 H 1.09001 * 109.51952 * 62.25288 * 17 16 14 29 29 H 1.09002 * 109.52604 * 182.38110 * 17 16 14 30 30 H 1.08993 * 109.50112 * 297.71243 * 18 17 16 31 31 H 1.08992 * 109.50394 * 177.58991 * 18 17 16 32 32 H 1.09008 * 109.45841 * 180.80263 * 19 18 17 33 33 H 1.09003 * 109.46290 * 60.84246 * 19 18 17 34 34 H 1.00895 * 111.00020 * 297.64567 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6179 0.0000 4 1 3.0957 1.6965 -1.2125 5 1 1.2768 2.7465 -0.0006 6 1 3.0956 1.6965 1.2124 7 6 2.0089 -1.2138 -0.0005 8 1 3.0889 -1.2138 -0.0001 9 6 1.3097 -2.4250 -0.0005 10 6 -0.0745 -2.5919 0.0005 11 7 -0.3108 -3.9040 -0.0005 12 6 0.8282 -4.5473 -0.0015 13 6 0.9776 -6.0469 -0.0033 14 6 1.0284 -6.5527 -1.4464 15 1 1.8229 -6.0355 -1.9846 16 6 1.3062 -8.0576 -1.4498 17 6 1.3362 -8.5629 -2.8949 18 6 0.0020 -8.2335 -3.5704 19 6 -0.2379 -6.7235 -3.5054 20 7 -0.2587 -6.2897 -2.1026 21 8 1.8419 -3.6708 0.0045 22 1 -0.4851 0.8400 -0.0004 23 1 -0.8157 -1.8063 0.0018 24 1 0.1280 -6.4974 0.5098 25 1 1.8991 -6.3208 0.5103 26 1 2.2689 -8.2511 -0.9766 27 1 0.5198 -8.5741 -0.8994 28 1 2.1479 -8.0750 -3.4346 29 1 1.4918 -9.6417 -2.9005 30 1 -0.8052 -8.7527 -3.0539 31 1 0.0330 -8.5526 -4.6121 32 1 -1.1938 -6.4872 -3.9729 33 1 0.5625 -6.2055 -4.0339 34 1 -1.0167 -6.7267 -1.6002 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260956077.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:40 Heat of formation + Delta-G solvation = -34.385433 kcal Electronic energy + Delta-G solvation = -16628.579923 eV Core-core repulsion = 13946.490558 eV Total energy + Delta-G solvation = -2682.089365 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.92336 -39.82978 -35.99570 -34.85403 -33.89657 -32.50115 -30.97643 -28.89392 -25.97712 -24.24352 -22.85801 -22.75428 -21.33048 -21.03989 -19.55152 -17.47948 -16.90650 -16.53085 -16.12072 -16.00723 -15.59501 -15.11791 -14.99594 -14.60372 -13.97834 -13.80496 -13.36863 -13.11679 -12.96583 -12.76448 -12.72228 -12.43776 -12.10841 -12.05173 -11.95667 -11.59429 -11.44749 -11.41422 -11.23576 -10.63235 -9.29249 -9.03023 -8.74931 -6.53100 1.11674 1.37242 1.54380 1.67312 2.12845 2.52090 2.78897 3.13000 3.39264 3.77360 3.94914 3.96682 4.11636 4.30168 4.37215 4.47066 4.55782 4.71395 4.80216 4.90377 4.95242 4.96374 5.10242 5.15645 5.18100 5.19930 5.27974 5.42272 5.50820 5.65746 6.23079 6.27165 6.42384 6.56580 6.64101 6.71987 7.81718 8.23243 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.047250 B = 0.005356 C = 0.005292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.448272 B = 5226.332890 C = 5289.476831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.026 3.974 3 Si 1.022 2.978 4 H -0.256 1.256 5 H -0.259 1.259 6 H -0.254 1.254 7 C -0.461 4.461 8 H 0.087 0.913 9 C 0.107 3.893 10 C -0.211 4.211 11 N -0.462 5.462 12 C 0.052 3.948 13 C 0.012 3.988 14 C 0.101 3.899 15 H 0.051 0.949 16 C -0.142 4.142 17 C -0.117 4.117 18 C -0.148 4.148 19 C 0.058 3.942 20 N -0.693 5.693 21 O -0.264 6.264 22 H 0.296 0.704 23 H 0.175 0.825 24 H 0.097 0.903 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.282 -11.397 -4.303 12.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.189 4.189 3 Si 0.839 3.161 4 H -0.180 1.180 5 H -0.183 1.183 6 H -0.178 1.178 7 C -0.490 4.490 8 H 0.105 0.895 9 C 0.055 3.945 10 C -0.354 4.354 11 N -0.190 5.190 12 C -0.151 4.151 13 C -0.027 4.027 14 C -0.010 4.010 15 H 0.070 0.930 16 C -0.181 4.181 17 C -0.154 4.154 18 C -0.188 4.188 19 C -0.071 4.071 20 N -0.323 5.323 21 O -0.157 6.157 22 H 0.107 0.893 23 H 0.192 0.808 24 H 0.115 0.885 25 H 0.114 0.886 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.656 -10.941 -4.443 11.924 hybrid contribution 0.682 0.310 0.069 0.753 sum 2.338 -10.632 -4.373 11.731 Atomic orbital electron populations 1.69656 1.09280 1.31193 1.34249 1.27028 0.95954 1.04676 0.91232 0.84677 0.78096 0.72987 0.80348 1.18034 1.18256 1.17836 1.18780 0.95257 0.87740 1.47247 0.89497 1.21125 0.93368 0.82528 0.97509 1.23953 0.95042 0.91720 1.24682 1.69517 1.28498 1.06301 1.14669 1.25764 0.80143 0.94681 1.14474 1.19852 1.03942 0.81285 0.97576 1.21442 0.91807 0.94687 0.93051 0.93031 1.22209 1.03374 0.94564 0.97996 1.21554 0.97323 1.01528 0.95039 1.22198 0.98062 0.96652 1.01859 1.21999 1.01638 0.94069 0.89439 1.60415 1.04750 1.64021 1.03148 1.84290 1.39027 1.16810 1.75542 0.89251 0.80804 0.88461 0.88642 0.90211 0.90533 0.92674 0.90068 0.91247 0.90394 0.90813 0.92965 0.83760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.01 10.32 21.87 0.23 -43.79 16 2 C 0.03 1.33 5.50 85.32 0.47 1.80 16 3 Si 1.02 38.03 29.56 68.60 2.03 40.05 16 4 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 5 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 6 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 7 C -0.46 -26.48 9.45 23.13 0.22 -26.26 16 8 H 0.09 4.69 7.85 -2.91 -0.02 4.67 16 9 C 0.11 6.58 7.08 22.94 0.16 6.74 16 10 C -0.21 -13.08 10.89 84.75 0.92 -12.15 16 11 N -0.46 -26.26 11.23 -300.12 -3.37 -29.63 16 12 C 0.05 2.65 7.27 88.26 0.64 3.29 16 13 C 0.01 0.42 5.47 29.85 0.16 0.59 16 14 C 0.10 3.16 2.41 44.94 0.11 3.27 16 15 H 0.05 1.88 8.14 -2.38 -0.02 1.87 16 16 C -0.14 -3.07 5.36 30.65 0.16 -2.90 16 17 C -0.12 -2.25 6.00 30.68 0.18 -2.06 16 18 C -0.15 -2.90 6.08 30.65 0.19 -2.72 16 19 C 0.06 1.56 6.55 86.33 0.57 2.12 16 20 N -0.69 -22.77 6.22 -491.68 -3.06 -25.83 16 21 O -0.26 -15.21 10.81 -11.76 -0.13 -15.33 16 22 H 0.30 14.09 8.30 -92.71 -0.77 13.32 16 23 H 0.18 11.10 5.76 -2.91 -0.02 11.09 16 24 H 0.10 3.14 8.14 -2.38 -0.02 3.12 16 25 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 26 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.34 10.41 8.79 -89.70 -0.79 9.62 16 Total: -1.00 -69.74 281.79 -0.20 -69.94 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 0.31 Total: 32.86 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: 3.79 Total: -28.28 kcal Atomic # 7 Polarization: -93.04 SS G_CDS: -6.20 Total: -99.24 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.13 Total: -15.33 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.05 kcal Total: -69.74 -0.20 -69.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260956077.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.555 kcal (2) G-P(sol) polarization free energy of solvation -69.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds