Wall clock time and date at job start Mon Mar 30 2020 03:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40085 * 126.03688 * 2 1 4 4 C 1.30839 * 108.20364 * 180.02562 * 3 2 1 5 5 C 1.39875 * 108.20184 * 0.02562 * 4 3 2 6 6 C 1.34949 * 126.03292 * 180.02562 * 2 1 3 7 7 C 1.50692 * 126.12911 * 359.96407 * 6 2 1 8 8 H 1.09010 * 110.54942 * 142.13576 * 7 6 2 9 9 C 1.54991 * 110.62144 * 265.01215 * 7 6 2 10 10 C 1.54813 * 102.09532 * 155.52405 * 9 7 6 11 11 C 1.54106 * 104.18475 * 339.12566 * 10 9 7 12 12 C 1.53002 * 109.87658 * 117.39209 * 11 10 9 13 13 C 1.50697 * 109.87383 * 238.54245 * 11 10 9 14 14 H 1.07997 * 120.00549 * 359.97438 * 13 11 10 15 15 C 1.37878 * 119.99474 * 180.02562 * 13 11 10 16 16 N 1.31517 * 120.00429 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 119.99918 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47345 * 89.99329 * 17 15 13 19 19 H 1.48501 * 109.47254 * 209.99792 * 17 15 13 20 20 H 1.48503 * 109.47068 * 329.99445 * 17 15 13 21 21 O 1.43735 * 107.29366 * 357.96708 * 11 10 9 22 22 H 1.09006 * 109.46733 * 269.99752 * 1 2 3 23 23 H 1.08996 * 109.47043 * 29.99734 * 1 2 3 24 24 H 1.09000 * 109.46815 * 150.00063 * 1 2 3 25 25 H 1.08003 * 125.89926 * 180.26060 * 4 3 2 26 26 H 1.08001 * 126.03591 * 180.02562 * 5 4 3 27 27 H 1.08996 * 110.91197 * 273.73105 * 9 7 6 28 28 H 1.09001 * 110.90455 * 37.29492 * 9 7 6 29 29 H 1.09004 * 110.48567 * 97.79688 * 10 9 7 30 30 H 1.09000 * 110.48773 * 220.31523 * 10 9 7 31 31 H 1.08997 * 109.47305 * 59.99963 * 12 11 10 32 32 H 1.09001 * 109.46822 * 179.97438 * 12 11 10 33 33 H 1.08995 * 109.46856 * 299.99741 * 12 11 10 34 34 H 0.96997 * 119.99977 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5347 0.7321 -0.0006 5 6 3.5437 -0.6666 -0.0015 6 6 2.2589 -1.0913 -0.0005 7 6 1.7973 -2.5258 -0.0004 8 1 2.4469 -3.1368 -0.6273 9 6 1.7509 -3.0842 1.4447 10 6 0.7110 -4.2241 1.3188 11 6 -0.0906 -3.8659 0.0523 12 6 0.0896 -4.9582 -1.0037 13 6 -1.5504 -3.7164 0.3952 14 1 -1.8838 -3.8609 1.4121 15 6 -2.4605 -3.3962 -0.5898 16 7 -2.0546 -3.2207 -1.8284 17 14 -4.2700 -3.2102 -0.1648 18 1 -4.5491 -1.7995 0.2054 19 1 -5.0958 -3.5862 -1.3404 20 1 -4.6036 -4.0973 0.9785 21 8 0.4257 -2.6187 -0.4416 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 4.4055 1.3710 0.0033 26 1 4.4211 -1.2964 -0.0018 27 1 2.7236 -3.4760 1.7419 28 1 1.4101 -2.3219 2.1454 29 1 1.2112 -5.1847 1.1947 30 1 0.0593 -4.2443 2.1923 31 1 -0.2686 -5.9086 -0.6082 32 1 -0.4801 -4.6985 -1.8960 33 1 1.1456 -5.0459 -1.2592 34 1 -2.6948 -2.9950 -2.5212 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380144530.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:53 Heat of formation + Delta-G solvation = 33.526320 kcal Electronic energy + Delta-G solvation = -17555.821012 eV Core-core repulsion = 14876.676521 eV Total energy + Delta-G solvation = -2679.144491 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.76456 -38.38963 -33.28951 -32.48511 -31.20299 -30.85355 -28.64601 -26.10046 -25.53355 -24.54450 -21.39445 -20.66478 -19.50713 -19.18077 -16.86361 -16.05973 -15.30955 -14.65567 -14.62277 -14.07649 -13.65001 -13.20384 -13.07552 -12.91819 -12.34565 -12.04836 -11.97024 -11.59287 -11.33938 -10.98954 -10.96181 -10.72764 -10.55573 -10.39650 -10.20445 -9.90471 -9.62510 -9.21895 -8.74168 -8.60849 -8.23308 -7.95614 -6.08769 -4.25620 2.37975 3.14258 3.21981 3.24239 3.30681 3.32756 4.31484 4.65134 5.14183 5.20442 5.38567 5.46700 5.63428 5.78466 5.89333 6.01880 6.04961 6.09012 6.22988 6.24776 6.45818 6.52127 6.69878 6.70988 6.80534 6.90837 7.05207 7.14279 7.18213 7.55910 7.66634 8.01552 8.20689 8.23454 8.39417 8.85703 9.45337 10.92456 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.029402 B = 0.009156 C = 0.007804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.078034 B = 3057.387758 C = 3587.070493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.345 5.345 3 N -0.316 5.316 4 C 0.036 3.964 5 C -0.292 4.292 6 C 0.115 3.885 7 C 0.123 3.877 8 H 0.078 0.922 9 C -0.137 4.137 10 C -0.141 4.141 11 C 0.226 3.774 12 C -0.150 4.150 13 C -0.523 4.523 14 H 0.063 0.937 15 C 0.080 3.920 16 N -0.859 5.859 17 Si 0.887 3.113 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 O -0.342 6.342 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.142 0.858 25 H 0.176 0.824 26 H 0.141 0.859 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.036 0.964 32 H 0.091 0.909 33 H 0.011 0.989 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.023 1.227 3.310 7.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.126 5.126 3 N -0.138 5.138 4 C -0.149 4.149 5 C -0.322 4.322 6 C -0.015 4.015 7 C 0.063 3.937 8 H 0.095 0.905 9 C -0.175 4.175 10 C -0.179 4.179 11 C 0.189 3.811 12 C -0.208 4.208 13 C -0.560 4.560 14 H 0.081 0.919 15 C -0.125 4.125 16 N -0.496 5.496 17 Si 0.715 3.285 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.198 1.198 21 O -0.262 6.262 22 H 0.083 0.917 23 H 0.088 0.912 24 H 0.160 0.840 25 H 0.193 0.807 26 H 0.159 0.841 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.110 0.890 33 H 0.030 0.970 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.872 2.442 2.991 7.028 hybrid contribution -0.257 -0.638 0.332 0.764 sum 5.615 1.804 3.322 6.769 Atomic orbital electron populations 1.22469 0.72830 1.06564 1.03465 1.48551 1.07169 1.02562 1.54278 1.77252 1.01812 1.09218 1.25541 1.23622 0.95171 0.94804 1.01264 1.21027 0.95887 0.94944 1.20340 1.21114 0.90908 0.90188 0.99332 1.21486 0.89618 0.87675 0.94960 0.90459 1.23020 0.99339 0.98745 0.96410 1.23088 0.96917 0.96651 1.01215 1.19718 0.92580 0.81360 0.87458 1.22170 0.97631 0.97722 1.03257 1.21076 0.89884 1.50120 0.94929 0.91915 1.25028 0.98627 0.93937 0.94954 1.69948 1.34182 1.44996 1.00436 0.86685 0.85130 0.78605 0.78128 1.20478 1.21106 1.19810 1.89142 1.19153 1.41663 1.76212 0.91693 0.91167 0.84038 0.80702 0.84126 0.91581 0.91591 0.92548 0.91343 0.94465 0.88995 0.96962 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.71 11.02 59.85 0.66 2.37 16 2 N -0.34 -6.96 4.01 -63.88 -0.26 -7.21 16 3 N -0.32 -6.11 12.58 30.63 0.39 -5.72 16 4 C 0.04 0.59 12.03 -17.36 -0.21 0.38 16 5 C -0.29 -4.90 10.72 -40.01 -0.43 -5.33 16 6 C 0.11 2.21 6.13 -82.27 -0.50 1.70 16 7 C 0.12 2.39 3.74 -26.84 -0.10 2.29 16 8 H 0.08 1.44 8.12 -51.92 -0.42 1.01 16 9 C -0.14 -2.41 6.58 -24.72 -0.16 -2.58 16 10 C -0.14 -2.73 6.26 -25.20 -0.16 -2.89 16 11 C 0.23 5.20 0.74 -91.19 -0.07 5.13 16 12 C -0.15 -3.42 8.39 37.16 0.31 -3.11 16 13 C -0.52 -13.27 8.26 -34.44 -0.28 -13.56 16 14 H 0.06 1.58 7.34 -52.49 -0.39 1.20 16 15 C 0.08 2.06 5.26 -17.82 -0.09 1.96 16 16 N -0.86 -22.89 10.93 55.43 0.61 -22.28 16 17 Si 0.89 19.99 29.54 -169.99 -5.02 14.97 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 O -0.34 -7.92 6.73 -35.23 -0.24 -8.15 16 22 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 23 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 24 H 0.14 3.21 5.19 -51.93 -0.27 2.95 16 25 H 0.18 2.12 8.06 -52.48 -0.42 1.70 16 26 H 0.14 1.96 8.06 -52.49 -0.42 1.53 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.20 8.05 -51.93 -0.42 0.78 16 29 H 0.06 1.00 7.70 -51.93 -0.40 0.60 16 30 H 0.07 1.33 7.41 -51.93 -0.38 0.95 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 2.35 6.00 -51.93 -0.31 2.03 16 33 H 0.01 0.24 8.12 -51.93 -0.42 -0.18 16 34 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 279.15 15.07 4.21 4.21 Total: -1.00 -27.90 279.15 -6.04 -33.94 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -4.68 Total: 3.88 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -1.04 Total: -13.62 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.73 Total: -35.22 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.24 Total: -8.15 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.90 -6.04 -33.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380144530.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.463 kcal (2) G-P(sol) polarization free energy of solvation -27.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds