Wall clock time and date at job start Mon Mar 30 2020 03:37:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52999 * 109.46626 * 2 1
4 4 O 1.42895 * 109.47000 * 120.00066 * 2 1 3
5 5 C 1.35680 * 116.99448 * 149.99923 * 4 2 1
6 6 N 1.32275 * 119.68838 * 0.02562 * 5 4 2
7 7 C 1.31934 * 121.64907 * 179.97438 * 6 5 4
8 8 C 1.38089 * 120.83452 * 359.97438 * 7 6 5
9 9 C 1.38786 * 119.28835 * 359.97438 * 8 7 6
10 10 C 1.38422 * 118.48078 * 359.74693 * 9 8 7
11 11 C 1.50700 * 120.43989 * 180.24363 * 10 9 8
12 12 N 1.46500 * 109.47610 * 260.25386 * 11 10 9
13 13 C 1.36938 * 120.00334 * 180.02562 * 12 11 10
14 14 H 1.07998 * 119.99875 * 0.02562 * 13 12 11
15 15 C 1.38815 * 120.00117 * 179.97438 * 13 12 11
16 16 N 1.31622 * 119.99944 * 0.02562 * 15 13 12
17 17 Si 1.86791 * 120.00127 * 179.97438 * 15 13 12
18 18 H 1.48504 * 109.46868 * 0.02562 * 17 15 13
19 19 H 1.48498 * 109.47175 * 120.00063 * 17 15 13
20 20 H 1.48499 * 109.47390 * 240.00241 * 17 15 13
21 21 H 1.09001 * 109.46801 * 59.99811 * 1 2 3
22 22 H 1.09001 * 109.46998 * 179.97438 * 1 2 3
23 23 H 1.09000 * 109.47050 * 299.99699 * 1 2 3
24 24 H 1.09000 * 109.47050 * 240.00301 * 2 1 3
25 25 H 1.09002 * 109.46719 * 180.02562 * 3 2 1
26 26 H 1.08993 * 109.47839 * 299.99931 * 3 2 1
27 27 H 1.09000 * 109.47160 * 60.00369 * 3 2 1
28 28 H 1.08005 * 119.58071 * 179.97438 * 7 6 5
29 29 H 1.08004 * 120.35525 * 180.02562 * 8 7 6
30 30 H 1.07993 * 120.76093 * 180.02562 * 9 8 7
31 31 H 1.09003 * 109.47529 * 20.25497 * 11 10 9
32 32 H 1.09000 * 109.46875 * 140.25241 * 11 10 9
33 33 H 0.97004 * 119.99747 * 359.97438 * 12 11 10
34 34 H 0.96994 * 119.99937 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 8 2.0064 -0.6736 1.1667
5 6 3.1987 -1.3130 1.0651
6 7 3.8593 -1.2891 -0.0806
7 6 5.0217 -1.8970 -0.2223
8 6 5.5938 -2.5845 0.8298
9 6 4.9328 -2.6323 2.0491
10 6 3.7179 -1.9795 2.1674
11 6 2.9650 -1.9982 3.4727
12 7 1.9050 -3.0076 3.4108
13 6 1.0843 -3.2057 4.4889
14 1 1.2181 -2.6174 5.3847
15 6 0.0796 -4.1617 4.4300
16 7 -0.0838 -4.8783 3.3381
17 14 -1.0395 -4.4324 5.9009
18 1 -0.6507 -3.5073 6.9956
19 1 -2.4469 -4.1688 5.5072
20 1 -0.9111 -5.8358 6.3691
21 1 -0.3633 0.5139 -0.8900
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3633 0.5138 0.8900
24 1 1.8934 -0.5138 -0.8900
25 1 3.1300 1.4425 -0.0005
26 1 1.6767 1.9564 -0.8899
27 1 1.6766 1.9563 0.8900
28 1 5.5322 -1.8564 -1.1733
29 1 6.5459 -3.0789 0.7053
30 1 5.3587 -3.1627 2.8879
31 1 3.6508 -2.2409 4.2844
32 1 2.5232 -1.0179 3.6513
33 1 1.7841 -3.5351 2.6058
34 1 -0.7856 -5.5466 3.2971
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000042391801.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:05
Heat of formation + Delta-G solvation = 4.107480 kcal
Electronic energy + Delta-G solvation = -16700.596831 eV
Core-core repulsion = 14020.176644 eV
Total energy + Delta-G solvation = -2680.420187 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.37832 -37.87006 -34.94789 -32.98039 -32.44607 -30.83051 -29.41141 -27.06923
-25.65875 -23.56224 -22.96375 -21.25724 -20.73034 -18.11611 -17.16000 -16.49506
-15.45686 -15.15736 -14.65323 -14.23246 -14.07668 -13.61252 -13.16931 -12.99496
-12.73796 -12.57946 -12.13933 -12.11149 -12.05204 -11.70906 -11.24576 -10.83361
-10.77459 -10.66635 -10.49849 -10.03440 -9.77516 -9.37932 -9.23628 -8.82562
-8.02227 -6.84630 -5.69550 -2.97884 1.46890 1.61748 3.41314 3.47147
3.52412 3.54924 4.08613 4.55256 4.67255 5.06801 5.14918 5.19796
5.29204 5.38048 5.45064 5.49412 5.63708 5.69901 5.90946 5.93338
6.01837 6.02284 6.17409 6.25360 6.32692 6.42357 6.45643 6.64552
6.84412 6.92393 7.70801 7.75665 8.16724 8.48020 9.59583 10.16982
10.53077 11.53338
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.022408 B = 0.007673 C = 0.006237
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1249.242742 B = 3648.334044 C = 4487.958582
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.081 3.919
3 C -0.165 4.165
4 O -0.280 6.280
5 C 0.337 3.663
6 N -0.547 5.547
7 C 0.126 3.874
8 C -0.219 4.219
9 C -0.034 4.034
10 C -0.148 4.148
11 C 0.201 3.799
12 N -0.722 5.722
13 C -0.234 4.234
14 H 0.071 0.929
15 C -0.015 4.015
16 N -0.932 5.932
17 Si 0.907 3.093
18 H -0.280 1.280
19 H -0.292 1.292
20 H -0.292 1.292
21 H 0.070 0.930
22 H 0.068 0.932
23 H 0.065 0.935
24 H 0.085 0.915
25 H 0.058 0.942
26 H 0.066 0.934
27 H 0.060 0.940
28 H 0.152 0.848
29 H 0.131 0.869
30 H 0.138 0.862
31 H 0.027 0.973
32 H 0.033 0.967
33 H 0.384 0.616
34 H 0.253 0.747
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.782 9.024 -7.890 14.860
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C 0.024 3.976
3 C -0.223 4.223
4 O -0.186 6.186
5 C 0.158 3.842
6 N -0.271 5.271
7 C -0.029 4.029
8 C -0.239 4.239
9 C -0.060 4.060
10 C -0.152 4.152
11 C 0.074 3.926
12 N -0.366 5.366
13 C -0.365 4.365
14 H 0.089 0.911
15 C -0.211 4.211
16 N -0.581 5.581
17 Si 0.738 3.262
18 H -0.206 1.206
19 H -0.219 1.219
20 H -0.220 1.220
21 H 0.089 0.911
22 H 0.087 0.913
23 H 0.084 0.916
24 H 0.103 0.897
25 H 0.077 0.923
26 H 0.084 0.916
27 H 0.079 0.921
28 H 0.169 0.831
29 H 0.149 0.851
30 H 0.156 0.844
31 H 0.045 0.955
32 H 0.051 0.949
33 H 0.217 0.783
34 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges 8.127 9.541 -8.190 14.972
hybrid contribution -0.263 -0.833 0.921 1.270
sum 7.864 8.708 -7.269 13.802
Atomic orbital electron populations
1.21876 0.92976 1.03547 1.02328 1.22270 0.94640 0.92265 0.88399
1.22206 1.01723 0.96155 1.02222 1.86493 1.31139 1.63645 1.37327
1.19689 0.85855 0.89601 0.89095 1.67234 1.10660 1.24532 1.24702
1.22246 0.90032 0.92228 0.98439 1.21876 1.02587 1.04916 0.94541
1.21386 0.92750 0.94161 0.97662 1.20358 0.96798 1.00873 0.97136
1.19428 0.89937 0.93996 0.89271 1.42290 1.35195 1.42088 1.17059
1.19283 1.08335 1.15474 0.93428 0.91071 1.24731 0.99599 0.99280
0.97460 1.69690 1.35164 1.26489 1.26807 0.86115 0.80680 0.77445
0.81961 1.20560 1.21939 1.21952 0.91149 0.91327 0.91615 0.89722
0.92331 0.91551 0.92070 0.83073 0.85096 0.84379 0.95514 0.94914
0.78284 0.93682
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.16 9.56 37.16 0.36 -1.80 16
2 C 0.08 1.26 3.11 -26.73 -0.08 1.18 16
3 C -0.17 -2.15 9.53 37.16 0.35 -1.79 16
4 O -0.28 -5.47 9.02 -18.74 -0.17 -5.64 16
5 C 0.34 6.40 7.43 -17.12 -0.13 6.27 16
6 N -0.55 -9.19 8.65 -13.33 -0.12 -9.31 16
7 C 0.13 1.75 11.18 -17.56 -0.20 1.55 16
8 C -0.22 -2.92 10.11 -39.43 -0.40 -3.32 16
9 C -0.03 -0.53 9.81 -39.31 -0.39 -0.92 16
10 C -0.15 -2.83 5.28 -104.32 -0.55 -3.38 16
11 C 0.20 4.39 6.07 -5.19 -0.03 4.36 16
12 N -0.72 -19.29 5.59 -61.08 -0.34 -19.63 16
13 C -0.23 -6.75 9.99 -15.06 -0.15 -6.90 16
14 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16
15 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16
16 N -0.93 -29.00 13.06 55.49 0.72 -28.28 16
17 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16
18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
19 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16
20 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16
21 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
22 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16
23 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16
24 H 0.08 1.34 6.98 -51.93 -0.36 0.97 16
25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
28 H 0.15 1.54 8.06 -52.48 -0.42 1.12 16
29 H 0.13 1.32 8.06 -52.48 -0.42 0.89 16
30 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16
31 H 0.03 0.56 8.03 -51.93 -0.42 0.14 16
32 H 0.03 0.74 7.87 -51.93 -0.41 0.33 16
33 H 0.38 11.01 7.66 -40.82 -0.31 10.69 16
34 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16
LS Contribution 294.47 15.07 4.44 4.44
Total: -1.00 -32.52 294.47 -6.65 -39.17
By element:
Atomic # 1 Polarization: 11.54 SS G_CDS: -4.85 Total: 6.68 kcal
Atomic # 6 Polarization: -3.98 SS G_CDS: -1.31 Total: -5.29 kcal
Atomic # 7 Polarization: -57.48 SS G_CDS: 0.27 Total: -57.21 kcal
Atomic # 8 Polarization: -5.47 SS G_CDS: -0.17 Total: -5.64 kcal
Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal
Total LS contribution 4.44 Total: 4.44 kcal
Total: -32.52 -6.65 -39.17 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000042391801.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.277 kcal
(2) G-P(sol) polarization free energy of solvation -32.520 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.757 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.169 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.107 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds