Wall clock time and date at job start Mon Mar 30 2020 03:37:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52999 * 109.46626 * 2 1
4 4 O 1.42895 * 109.47000 * 120.00066 * 2 1 3
5 5 C 1.35680 * 116.99448 * 149.99923 * 4 2 1
6 6 N 1.32275 * 119.68838 * 0.02562 * 5 4 2
7 7 C 1.31934 * 121.64907 * 179.97438 * 6 5 4
8 8 C 1.38089 * 120.83452 * 359.97438 * 7 6 5
9 9 C 1.38786 * 119.28835 * 359.97438 * 8 7 6
10 10 C 1.38422 * 118.48078 * 359.74693 * 9 8 7
11 11 C 1.50700 * 120.43989 * 180.24363 * 10 9 8
12 12 N 1.46500 * 109.47610 * 260.25386 * 11 10 9
13 13 C 1.36938 * 120.00334 * 180.02562 * 12 11 10
14 14 H 1.07998 * 119.99875 * 0.02562 * 13 12 11
15 15 C 1.38815 * 120.00117 * 179.97438 * 13 12 11
16 16 N 1.31622 * 119.99944 * 0.02562 * 15 13 12
17 17 Si 1.86791 * 120.00127 * 179.97438 * 15 13 12
18 18 H 1.48504 * 109.46868 * 0.02562 * 17 15 13
19 19 H 1.48498 * 109.47175 * 120.00063 * 17 15 13
20 20 H 1.48499 * 109.47390 * 240.00241 * 17 15 13
21 21 H 1.09001 * 109.46801 * 59.99811 * 1 2 3
22 22 H 1.09001 * 109.46998 * 179.97438 * 1 2 3
23 23 H 1.09000 * 109.47050 * 299.99699 * 1 2 3
24 24 H 1.09000 * 109.47050 * 240.00301 * 2 1 3
25 25 H 1.09002 * 109.46719 * 180.02562 * 3 2 1
26 26 H 1.08993 * 109.47839 * 299.99931 * 3 2 1
27 27 H 1.09000 * 109.47160 * 60.00369 * 3 2 1
28 28 H 1.08005 * 119.58071 * 179.97438 * 7 6 5
29 29 H 1.08004 * 120.35525 * 180.02562 * 8 7 6
30 30 H 1.07993 * 120.76093 * 180.02562 * 9 8 7
31 31 H 1.09003 * 109.47529 * 20.25497 * 11 10 9
32 32 H 1.09000 * 109.46875 * 140.25241 * 11 10 9
33 33 H 0.97004 * 119.99747 * 359.97438 * 12 11 10
34 34 H 0.96994 * 119.99937 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 8 2.0064 -0.6736 1.1667
5 6 3.1987 -1.3130 1.0651
6 7 3.8593 -1.2891 -0.0806
7 6 5.0217 -1.8970 -0.2223
8 6 5.5938 -2.5845 0.8298
9 6 4.9328 -2.6323 2.0491
10 6 3.7179 -1.9795 2.1674
11 6 2.9650 -1.9982 3.4727
12 7 1.9050 -3.0076 3.4108
13 6 1.0843 -3.2057 4.4889
14 1 1.2181 -2.6174 5.3847
15 6 0.0796 -4.1617 4.4300
16 7 -0.0838 -4.8783 3.3381
17 14 -1.0395 -4.4324 5.9009
18 1 -0.6507 -3.5073 6.9956
19 1 -2.4469 -4.1688 5.5072
20 1 -0.9111 -5.8358 6.3691
21 1 -0.3633 0.5139 -0.8900
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3633 0.5138 0.8900
24 1 1.8934 -0.5138 -0.8900
25 1 3.1300 1.4425 -0.0005
26 1 1.6767 1.9564 -0.8899
27 1 1.6766 1.9563 0.8900
28 1 5.5322 -1.8564 -1.1733
29 1 6.5459 -3.0789 0.7053
30 1 5.3587 -3.1627 2.8879
31 1 3.6508 -2.2409 4.2844
32 1 2.5232 -1.0179 3.6513
33 1 1.7841 -3.5351 2.6058
34 1 -0.7856 -5.5466 3.2971
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000042391801.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:05
Heat of formation + Delta-G solvation = -18.694566 kcal
Electronic energy + Delta-G solvation = -16701.585602 eV
Core-core repulsion = 14020.176644 eV
Total energy + Delta-G solvation = -2681.408958 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-41.64787 -39.13407 -36.80024 -34.39099 -33.96541 -32.47079 -30.95967 -28.17822
-27.41988 -24.96912 -24.70097 -22.73557 -21.97597 -19.45384 -19.21755 -17.76468
-16.89157 -16.51334 -16.37769 -15.65491 -15.45557 -15.23249 -14.76690 -14.55211
-14.06134 -13.92670 -13.74424 -13.25541 -13.18221 -13.11502 -12.83332 -12.81972
-12.43928 -12.05406 -11.88002 -11.85995 -11.69806 -11.00266 -10.70819 -10.46844
-9.30420 -9.00328 -7.94099 -5.23634 0.22429 0.39507 1.46325 1.48024
1.58286 2.18641 2.55672 2.86907 3.37453 3.39695 3.90218 4.00028
4.03501 4.08553 4.14895 4.22986 4.27620 4.37153 4.67540 4.67798
4.80913 4.83526 4.85791 4.92320 4.99582 5.15640 5.23656 5.26424
5.42614 5.47934 5.65371 6.25834 6.45093 6.93754 7.32247 8.05003
8.31677 9.29742
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.022408 B = 0.007673 C = 0.006237
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1249.242742 B = 3648.334044 C = 4487.958582
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.072 3.928
3 C -0.154 4.154
4 O -0.313 6.313
5 C 0.316 3.684
6 N -0.556 5.556
7 C 0.128 3.872
8 C -0.204 4.204
9 C -0.036 4.036
10 C -0.184 4.184
11 C 0.207 3.793
12 N -0.733 5.733
13 C -0.242 4.242
14 H 0.077 0.923
15 C -0.077 4.077
16 N -0.970 5.970
17 Si 0.977 3.023
18 H -0.265 1.265
19 H -0.294 1.294
20 H -0.291 1.291
21 H 0.106 0.894
22 H 0.040 0.960
23 H 0.057 0.943
24 H 0.081 0.919
25 H 0.050 0.950
26 H 0.095 0.905
27 H 0.057 0.943
28 H 0.195 0.805
29 H 0.175 0.825
30 H 0.153 0.847
31 H 0.038 0.962
32 H 0.019 0.981
33 H 0.370 0.630
34 H 0.250 0.750
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.236 9.489 -8.485 16.334
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C 0.017 3.983
3 C -0.212 4.212
4 O -0.221 6.221
5 C 0.138 3.862
6 N -0.280 5.280
7 C -0.028 4.028
8 C -0.224 4.224
9 C -0.061 4.061
10 C -0.187 4.187
11 C 0.080 3.920
12 N -0.375 5.375
13 C -0.374 4.374
14 H 0.095 0.905
15 C -0.268 4.268
16 N -0.621 5.621
17 Si 0.805 3.195
18 H -0.189 1.189
19 H -0.221 1.221
20 H -0.218 1.218
21 H 0.125 0.875
22 H 0.060 0.940
23 H 0.077 0.923
24 H 0.099 0.901
25 H 0.069 0.931
26 H 0.114 0.886
27 H 0.076 0.924
28 H 0.212 0.788
29 H 0.192 0.808
30 H 0.171 0.829
31 H 0.056 0.944
32 H 0.037 0.963
33 H 0.201 0.799
34 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges 9.609 10.045 -8.768 16.435
hybrid contribution -0.585 -0.948 1.011 1.504
sum 9.024 9.097 -7.757 14.978
Atomic orbital electron populations
1.21894 0.92481 1.02167 1.03743 1.22531 0.95089 0.93476 0.87249
1.22120 1.01142 0.94465 1.03453 1.86438 1.31955 1.64374 1.39303
1.19813 0.86129 0.90369 0.89877 1.67311 1.11794 1.25237 1.23658
1.23100 0.88910 0.90434 1.00321 1.22318 1.03568 1.03611 0.92887
1.21682 0.91680 0.93315 0.99466 1.20243 0.98463 1.03866 0.96097
1.19389 0.89029 0.91817 0.91716 1.42472 1.36201 1.42887 1.15910
1.19698 1.08521 1.15064 0.94111 0.90501 1.25599 1.01413 0.99434
1.00397 1.69858 1.35959 1.27323 1.29006 0.85024 0.78151 0.77397
0.78889 1.18918 1.22111 1.21758 0.87517 0.94028 0.92339 0.90098
0.93061 0.88623 0.92422 0.78813 0.80783 0.82922 0.94449 0.96350
0.79927 0.94088
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.25 9.56 71.98 0.69 -3.56 16
2 C 0.07 2.29 3.11 30.60 0.10 2.38 16
3 C -0.15 -3.87 9.53 71.98 0.69 -3.19 16
4 O -0.31 -12.72 9.02 -89.98 -0.81 -13.53 16
5 C 0.32 12.17 7.43 84.78 0.63 12.80 16
6 N -0.56 -18.03 8.65 -308.93 -2.67 -20.70 16
7 C 0.13 3.14 11.18 84.64 0.95 4.09 16
8 C -0.20 -4.74 10.11 22.37 0.23 -4.51 16
9 C -0.04 -1.07 9.81 22.44 0.22 -0.85 16
10 C -0.18 -7.06 5.28 -19.67 -0.10 -7.17 16
11 C 0.21 9.29 6.07 85.63 0.52 9.81 16
12 N -0.73 -40.30 5.59 -347.17 -1.94 -42.25 16
13 C -0.24 -14.23 9.99 84.03 0.84 -13.39 16
14 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16
15 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16
16 N -0.97 -61.81 13.06 21.65 0.28 -61.53 16
17 Si 0.98 47.60 29.55 68.60 2.03 49.63 16
18 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16
19 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16
20 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16
21 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16
22 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16
23 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16
24 H 0.08 2.56 6.98 -2.39 -0.02 2.54 16
25 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16
26 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16
27 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16
28 H 0.20 3.01 8.06 -2.91 -0.02 2.99 16
29 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16
30 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16
31 H 0.04 1.58 8.03 -2.39 -0.02 1.56 16
32 H 0.02 0.87 7.87 -2.39 -0.02 0.85 16
33 H 0.37 22.04 7.66 -92.71 -0.71 21.33 16
34 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16
Total: -1.00 -72.26 294.47 2.48 -69.78
By element:
Atomic # 1 Polarization: 25.91 SS G_CDS: 0.38 Total: 26.29 kcal
Atomic # 6 Polarization: -12.90 SS G_CDS: 5.21 Total: -7.69 kcal
Atomic # 7 Polarization: -120.15 SS G_CDS: -4.33 Total: -124.48 kcal
Atomic # 8 Polarization: -12.72 SS G_CDS: -0.81 Total: -13.53 kcal
Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal
Total: -72.26 2.48 -69.78 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000042391801.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.087 kcal
(2) G-P(sol) polarization free energy of solvation -72.257 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.170 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.782 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.695 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds