Wall clock time and date at job start Mon Mar 30 2020 03:11:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 N 1.28138 * 119.06177 * 2 1
4 4 C 1.30700 * 123.98991 * 179.97438 * 3 2 1
5 5 C 1.50700 * 119.32699 * 179.97438 * 4 3 2
6 6 C 1.53006 * 109.47329 * 0.02766 * 5 4 3
7 7 C 1.53008 * 109.46914 * 120.02124 * 5 4 3
8 8 C 1.52996 * 109.47600 * 240.02311 * 5 4 3
9 9 C 1.39245 * 121.34027 * 0.02562 * 4 3 2
10 10 C 1.40943 * 117.82070 * 0.26834 * 9 4 3
11 11 C 1.40387 * 121.64554 * 179.70367 * 10 9 4
12 12 H 1.08006 * 120.00132 * 204.10073 * 11 10 9
13 13 C 1.40260 * 120.00082 * 24.10143 * 11 10 9
14 14 N 1.30678 * 120.00052 * 13.06893 * 13 11 10
15 15 Si 1.86797 * 120.00247 * 193.06217 * 13 11 10
16 16 H 1.48503 * 109.47071 * 0.02562 * 15 13 11
17 17 H 1.48504 * 109.47223 * 120.00203 * 15 13 11
18 18 H 1.48498 * 109.47698 * 240.00147 * 15 13 11
19 19 C 1.34852 * 119.06232 * 179.97438 * 2 1 3
20 20 O 1.21781 * 120.86692 * 359.97438 * 19 2 1
21 21 H 1.09001 * 109.46976 * 359.97438 * 1 2 3
22 22 H 1.08996 * 109.47597 * 120.00261 * 1 2 3
23 23 H 1.09000 * 109.47264 * 240.00086 * 1 2 3
24 24 H 1.08993 * 109.47203 * 59.99434 * 6 5 4
25 25 H 1.09000 * 109.47327 * 179.97438 * 6 5 4
26 26 H 1.09003 * 109.46584 * 299.99709 * 6 5 4
27 27 H 1.09001 * 109.46668 * 60.00125 * 7 5 4
28 28 H 1.09002 * 109.46721 * 179.97438 * 7 5 4
29 29 H 1.08999 * 109.46818 * 300.00304 * 7 5 4
30 30 H 1.09003 * 109.47018 * 59.99858 * 8 5 4
31 31 H 1.09000 * 109.47327 * 180.02562 * 8 5 4
32 32 H 1.09001 * 109.47059 * 300.00535 * 8 5 4
33 33 H 1.08003 * 121.08509 * 180.02562 * 9 4 3
34 34 H 0.97004 * 120.00497 * 180.02562 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.0874 1.1201 0.0000
4 6 3.3896 1.2323 0.0005
5 6 4.0121 2.6047 -0.0002
6 6 2.9091 3.6652 -0.0006
7 6 4.8795 2.7719 1.2492
8 6 4.8797 2.7708 -1.2494
9 6 4.2133 0.1097 0.0005
10 6 3.5974 -1.1581 -0.0058
11 6 4.3506 -2.3428 -0.0125
12 1 3.9196 -3.2546 -0.3990
13 6 5.6628 -2.3424 0.4829
14 7 6.0986 -1.3251 1.1778
15 14 6.7875 -3.7961 0.1495
16 1 6.0599 -4.8107 -0.6546
17 1 7.9832 -3.3351 -0.6008
18 1 7.2137 -4.3982 1.4383
19 6 2.1200 -1.1787 0.0005
20 8 1.5098 -2.2326 0.0015
21 1 -0.3633 1.0277 0.0005
22 1 -0.3634 -0.5138 -0.8899
23 1 -0.3634 -0.5138 0.8900
24 1 2.2911 3.5469 0.8893
25 1 3.3594 4.6578 -0.0006
26 1 2.2911 3.5461 -0.8906
27 1 5.6653 2.0164 1.2495
28 1 5.3302 3.7644 1.2484
29 1 4.2614 2.6536 2.1391
30 1 4.2617 2.6517 -2.1394
31 1 5.3303 3.7633 -1.2495
32 1 5.6655 2.0153 -1.2490
33 1 5.2889 0.2072 0.0013
34 1 7.0063 -1.3246 1.5201
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000082451556.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:11:56
Heat of formation + Delta-G solvation = -2.736099 kcal
Electronic energy + Delta-G solvation = -17262.984589 eV
Core-core repulsion = 14582.267642 eV
Total energy + Delta-G solvation = -2680.716947 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.02687 -37.16076 -35.53754 -34.56809 -31.84318 -29.65916 -27.20990 -26.64392
-26.46528 -25.82949 -22.45952 -21.71742 -19.30445 -17.36633 -16.41980 -15.68604
-15.16571 -14.96982 -14.69198 -13.98216 -13.52548 -13.29154 -12.89702 -12.26141
-12.01064 -11.87220 -11.82117 -11.61926 -11.53353 -11.36088 -11.14716 -11.01177
-10.89018 -10.58119 -10.33319 -10.27424 -10.07349 -9.65301 -9.29648 -8.33978
-8.08034 -7.11829 -6.91759 -4.49052 2.35392 2.97621 2.99898 3.04944
3.29959 3.68706 3.83656 4.38442 5.20887 5.32661 5.49428 5.66848
5.69021 5.98054 6.01039 6.11165 6.14143 6.16921 6.28416 6.37289
6.43501 6.49706 6.63213 6.70762 6.79394 6.90483 6.95992 6.97718
7.22880 7.52989 7.62963 8.01542 8.27760 8.52501 8.56958 9.24592
9.90629 10.02166
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.021058 B = 0.010678 C = 0.007567
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1329.341619 B = 2621.669688 C = 3699.442350
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.105 3.895
2 N -0.361 5.361
3 N -0.381 5.381
4 C 0.140 3.860
5 C 0.002 3.998
6 C -0.122 4.122
7 C -0.131 4.131
8 C -0.132 4.132
9 C -0.278 4.278
10 C 0.036 3.964
11 C -0.382 4.382
12 H 0.090 0.910
13 C 0.065 3.935
14 N -0.759 5.759
15 Si 0.921 3.079
16 H -0.256 1.256
17 H -0.268 1.268
18 H -0.271 1.271
19 C 0.460 3.540
20 O -0.574 6.574
21 H 0.081 0.919
22 H 0.061 0.939
23 H 0.061 0.939
24 H 0.054 0.946
25 H 0.040 0.960
26 H 0.054 0.946
27 H 0.067 0.933
28 H 0.047 0.953
29 H 0.049 0.951
30 H 0.050 0.950
31 H 0.050 0.950
32 H 0.061 0.939
33 H 0.135 0.865
34 H 0.286 0.714
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.706 6.707 -1.256 6.860
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.037 4.037
2 N -0.178 5.178
3 N -0.206 5.206
4 C -0.023 4.023
5 C 0.000 4.000
6 C -0.180 4.180
7 C -0.189 4.189
8 C -0.190 4.190
9 C -0.305 4.305
10 C 0.024 3.976
11 C -0.414 4.414
12 H 0.108 0.892
13 C -0.156 4.156
14 N -0.383 5.383
15 Si 0.744 3.256
16 H -0.180 1.180
17 H -0.193 1.193
18 H -0.196 1.196
19 C 0.257 3.743
20 O -0.456 6.456
21 H 0.099 0.901
22 H 0.080 0.920
23 H 0.079 0.921
24 H 0.073 0.927
25 H 0.060 0.940
26 H 0.073 0.927
27 H 0.086 0.914
28 H 0.066 0.934
29 H 0.069 0.931
30 H 0.069 0.931
31 H 0.069 0.931
32 H 0.080 0.920
33 H 0.153 0.847
34 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -0.320 6.716 -1.121 6.816
hybrid contribution 1.085 -1.231 0.063 1.642
sum 0.764 5.485 -1.058 5.639
Atomic orbital electron populations
1.21563 0.77774 1.02525 1.01857 1.45661 1.06917 1.02906 1.62283
1.70166 1.12138 1.10229 1.28045 1.20746 0.88223 0.95128 0.98186
1.19122 0.94552 0.90606 0.95717 1.21634 0.97825 0.96149 1.02360
1.21803 0.99766 1.00774 0.96589 1.21804 0.99536 1.00829 0.96793
1.21561 1.00358 0.89372 1.19258 1.19847 0.87833 0.95304 0.94609
1.19480 0.95647 0.96212 1.30062 0.89220 1.26091 0.98584 0.98052
0.92896 1.69762 1.17556 1.29455 1.21557 0.86030 0.79400 0.80751
0.79414 1.17965 1.19299 1.19560 1.20416 0.90594 0.83374 0.79947
1.90660 1.70112 1.30395 1.54462 0.90057 0.92001 0.92066 0.92686
0.94048 0.92724 0.91361 0.93395 0.93135 0.93089 0.93125 0.92026
0.84698 0.90289
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 1.98 10.24 59.85 0.61 2.59 16
2 N -0.36 -8.66 3.62 -68.01 -0.25 -8.91 16
3 N -0.38 -8.76 9.34 33.53 0.31 -8.45 16
4 C 0.14 3.17 5.66 -82.70 -0.47 2.70 16
5 C 0.00 0.04 0.85 -155.66 -0.13 -0.09 16
6 C -0.12 -1.96 7.68 37.16 0.29 -1.68 16
7 C -0.13 -2.22 8.28 37.16 0.31 -1.92 16
8 C -0.13 -2.13 8.28 37.16 0.31 -1.82 16
9 C -0.28 -6.97 7.48 -38.18 -0.29 -7.26 16
10 C 0.04 0.99 5.79 -104.17 -0.60 0.39 16
11 C -0.38 -10.30 8.89 -38.01 -0.34 -10.64 16
12 H 0.09 2.44 7.82 -52.48 -0.41 2.03 16
13 C 0.07 1.58 5.29 -17.28 -0.09 1.49 16
14 N -0.76 -18.34 10.77 55.56 0.60 -17.75 16
15 Si 0.92 18.02 29.58 -169.99 -5.03 13.00 16
16 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16
17 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16
18 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16
19 C 0.46 12.58 7.70 -12.34 -0.10 12.48 16
20 O -0.57 -16.63 16.73 5.12 0.09 -16.54 16
21 H 0.08 1.30 8.05 -51.93 -0.42 0.89 16
22 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16
23 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
24 H 0.05 0.92 8.05 -51.93 -0.42 0.50 16
25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16
26 H 0.05 0.90 8.05 -51.93 -0.42 0.48 16
27 H 0.07 1.25 7.37 -51.93 -0.38 0.87 16
28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16
30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16
31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
32 H 0.06 1.05 7.37 -51.93 -0.38 0.67 16
33 H 0.14 3.39 5.24 -52.48 -0.28 3.12 16
34 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16
LS Contribution 284.74 15.07 4.29 4.29
Total: -1.00 -29.71 284.74 -5.28 -34.99
By element:
Atomic # 1 Polarization: 7.91 SS G_CDS: -4.80 Total: 3.11 kcal
Atomic # 6 Polarization: -3.25 SS G_CDS: -0.50 Total: -3.75 kcal
Atomic # 7 Polarization: -35.77 SS G_CDS: 0.67 Total: -35.10 kcal
Atomic # 8 Polarization: -16.63 SS G_CDS: 0.09 Total: -16.54 kcal
Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 13.00 kcal
Total LS contribution 4.29 Total: 4.29 kcal
Total: -29.71 -5.28 -34.99 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000082451556.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.258 kcal
(2) G-P(sol) polarization free energy of solvation -29.709 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.548 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.284 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.994 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.736 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds