Wall clock time and date at job start Mon Mar 30 2020 03:11:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 N 1.28138 * 119.06177 * 2 1
4 4 C 1.30700 * 123.98991 * 179.97438 * 3 2 1
5 5 C 1.50700 * 119.32699 * 179.97438 * 4 3 2
6 6 C 1.53006 * 109.47329 * 0.02766 * 5 4 3
7 7 C 1.53008 * 109.46914 * 120.02124 * 5 4 3
8 8 C 1.52996 * 109.47600 * 240.02311 * 5 4 3
9 9 C 1.39245 * 121.34027 * 0.02562 * 4 3 2
10 10 C 1.40943 * 117.82070 * 0.26834 * 9 4 3
11 11 C 1.40387 * 121.64554 * 179.70367 * 10 9 4
12 12 H 1.08006 * 120.00132 * 204.10073 * 11 10 9
13 13 C 1.40260 * 120.00082 * 24.10143 * 11 10 9
14 14 N 1.30678 * 120.00052 * 13.06893 * 13 11 10
15 15 Si 1.86797 * 120.00247 * 193.06217 * 13 11 10
16 16 H 1.48503 * 109.47071 * 0.02562 * 15 13 11
17 17 H 1.48504 * 109.47223 * 120.00203 * 15 13 11
18 18 H 1.48498 * 109.47698 * 240.00147 * 15 13 11
19 19 C 1.34852 * 119.06232 * 179.97438 * 2 1 3
20 20 O 1.21781 * 120.86692 * 359.97438 * 19 2 1
21 21 H 1.09001 * 109.46976 * 359.97438 * 1 2 3
22 22 H 1.08996 * 109.47597 * 120.00261 * 1 2 3
23 23 H 1.09000 * 109.47264 * 240.00086 * 1 2 3
24 24 H 1.08993 * 109.47203 * 59.99434 * 6 5 4
25 25 H 1.09000 * 109.47327 * 179.97438 * 6 5 4
26 26 H 1.09003 * 109.46584 * 299.99709 * 6 5 4
27 27 H 1.09001 * 109.46668 * 60.00125 * 7 5 4
28 28 H 1.09002 * 109.46721 * 179.97438 * 7 5 4
29 29 H 1.08999 * 109.46818 * 300.00304 * 7 5 4
30 30 H 1.09003 * 109.47018 * 59.99858 * 8 5 4
31 31 H 1.09000 * 109.47327 * 180.02562 * 8 5 4
32 32 H 1.09001 * 109.47059 * 300.00535 * 8 5 4
33 33 H 1.08003 * 121.08509 * 180.02562 * 9 4 3
34 34 H 0.97004 * 120.00497 * 180.02562 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.0874 1.1201 0.0000
4 6 3.3896 1.2323 0.0005
5 6 4.0121 2.6047 -0.0002
6 6 2.9091 3.6652 -0.0006
7 6 4.8795 2.7719 1.2492
8 6 4.8797 2.7708 -1.2494
9 6 4.2133 0.1097 0.0005
10 6 3.5974 -1.1581 -0.0058
11 6 4.3506 -2.3428 -0.0125
12 1 3.9196 -3.2546 -0.3990
13 6 5.6628 -2.3424 0.4829
14 7 6.0986 -1.3251 1.1778
15 14 6.7875 -3.7961 0.1495
16 1 6.0599 -4.8107 -0.6546
17 1 7.9832 -3.3351 -0.6008
18 1 7.2137 -4.3982 1.4383
19 6 2.1200 -1.1787 0.0005
20 8 1.5098 -2.2326 0.0015
21 1 -0.3633 1.0277 0.0005
22 1 -0.3634 -0.5138 -0.8899
23 1 -0.3634 -0.5138 0.8900
24 1 2.2911 3.5469 0.8893
25 1 3.3594 4.6578 -0.0006
26 1 2.2911 3.5461 -0.8906
27 1 5.6653 2.0164 1.2495
28 1 5.3302 3.7644 1.2484
29 1 4.2614 2.6536 2.1391
30 1 4.2617 2.6517 -2.1394
31 1 5.3303 3.7633 -1.2495
32 1 5.6655 2.0153 -1.2490
33 1 5.2889 0.2072 0.0013
34 1 7.0063 -1.3246 1.5201
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000082451556.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:11:56
Heat of formation + Delta-G solvation = -21.035522 kcal
Electronic energy + Delta-G solvation = -17263.778112 eV
Core-core repulsion = 14582.267642 eV
Total energy + Delta-G solvation = -2681.510470 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-41.94032 -38.90130 -37.37911 -36.42496 -33.63236 -31.54658 -28.85311 -28.11283
-27.96390 -27.51728 -24.29221 -23.62220 -20.91973 -19.19241 -18.31734 -17.58629
-17.04044 -16.78356 -16.48650 -15.59603 -14.91415 -14.81097 -14.48507 -14.07982
-13.78223 -13.58251 -13.34779 -13.25761 -13.05777 -12.76950 -12.70217 -12.66331
-12.38775 -12.15792 -12.00285 -11.67838 -11.56937 -11.44720 -11.14703 -10.24017
-10.04362 -9.06122 -8.76996 -6.47383 0.43641 1.26676 1.35726 1.45022
1.51543 1.93802 2.16877 2.51857 3.33348 3.60135 4.05238 4.22367
4.29474 4.43596 4.44489 4.62140 4.66191 4.87915 4.91477 4.93938
5.02960 5.06291 5.13750 5.17966 5.27245 5.29162 5.35664 5.58844
5.61200 5.69601 5.73311 6.08971 6.29731 6.57375 6.59234 7.21568
8.09401 8.11699
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.021058 B = 0.010678 C = 0.007567
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1329.341619 B = 2621.669688 C = 3699.442350
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.098 3.902
2 N -0.361 5.361
3 N -0.370 5.370
4 C 0.132 3.868
5 C -0.002 4.002
6 C -0.115 4.115
7 C -0.126 4.126
8 C -0.127 4.127
9 C -0.273 4.273
10 C -0.003 4.003
11 C -0.424 4.424
12 H 0.070 0.930
13 C 0.032 3.968
14 N -0.780 5.780
15 Si 0.993 3.007
16 H -0.266 1.266
17 H -0.249 1.249
18 H -0.258 1.258
19 C 0.437 3.563
20 O -0.609 6.609
21 H 0.114 0.886
22 H 0.070 0.930
23 H 0.066 0.934
24 H 0.044 0.956
25 H 0.076 0.924
26 H 0.048 0.952
27 H 0.047 0.953
28 H 0.086 0.914
29 H 0.038 0.962
30 H 0.045 0.955
31 H 0.087 0.913
32 H 0.045 0.955
33 H 0.132 0.868
34 H 0.300 0.700
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.769 8.648 -1.307 8.924
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.043 4.043
2 N -0.176 5.176
3 N -0.195 5.195
4 C -0.031 4.031
5 C -0.004 4.004
6 C -0.172 4.172
7 C -0.183 4.183
8 C -0.185 4.185
9 C -0.300 4.300
10 C -0.015 4.015
11 C -0.455 4.455
12 H 0.088 0.912
13 C -0.187 4.187
14 N -0.404 5.404
15 Si 0.812 3.188
16 H -0.190 1.190
17 H -0.173 1.173
18 H -0.183 1.183
19 C 0.234 3.766
20 O -0.494 6.494
21 H 0.132 0.868
22 H 0.089 0.911
23 H 0.085 0.915
24 H 0.064 0.936
25 H 0.095 0.905
26 H 0.067 0.933
27 H 0.066 0.934
28 H 0.105 0.895
29 H 0.057 0.943
30 H 0.065 0.935
31 H 0.106 0.894
32 H 0.064 0.936
33 H 0.150 0.850
34 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges 0.729 8.712 -1.164 8.820
hybrid contribution 0.706 -1.699 0.102 1.843
sum 1.435 7.013 -1.062 7.237
Atomic orbital electron populations
1.21887 0.74887 1.04887 1.02609 1.46034 1.08848 1.02231 1.60494
1.70347 1.12378 1.09252 1.27530 1.21532 0.87969 0.97051 0.96584
1.19351 0.95500 0.88352 0.97176 1.21577 0.96965 0.97109 1.01582
1.21757 0.98818 1.02348 0.95427 1.21776 0.98724 1.02503 0.95492
1.21653 1.00478 0.89467 1.18379 1.20301 0.88534 0.96632 0.96047
1.19590 0.97684 0.95643 1.32544 0.91172 1.26888 0.98822 1.01098
0.91927 1.69734 1.18663 1.30834 1.21153 0.84990 0.77382 0.76775
0.79645 1.18956 1.17268 1.18270 1.20621 0.90998 0.84084 0.80893
1.90602 1.70623 1.31523 1.56683 0.86788 0.91137 0.91515 0.93647
0.90516 0.93299 0.93388 0.89542 0.94280 0.93548 0.89398 0.93592
0.84999 0.88820
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 3.61 10.24 127.77 1.31 4.92 16
2 N -0.36 -17.39 3.62 -487.23 -1.76 -19.15 16
3 N -0.37 -16.80 9.34 -47.84 -0.45 -17.25 16
4 C 0.13 5.91 5.66 42.97 0.24 6.16 16
5 C 0.00 -0.05 0.85 -52.92 -0.04 -0.10 16
6 C -0.11 -3.31 7.68 71.98 0.55 -2.75 16
7 C -0.13 -3.96 8.28 71.98 0.60 -3.36 16
8 C -0.13 -3.79 8.28 71.98 0.60 -3.19 16
9 C -0.27 -13.95 7.48 23.17 0.17 -13.78 16
10 C 0.00 -0.20 5.79 -19.57 -0.11 -0.31 16
11 C -0.42 -23.87 8.89 23.29 0.21 -23.66 16
12 H 0.07 4.07 7.82 -2.91 -0.02 4.05 16
13 C 0.03 1.59 5.29 85.36 0.45 2.04 16
14 N -0.78 -37.94 10.77 21.88 0.24 -37.70 16
15 Si 0.99 37.02 29.58 68.60 2.03 39.05 16
16 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16
17 H -0.25 -8.47 7.11 99.48 0.71 -7.77 16
18 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16
19 C 0.44 24.73 7.70 86.75 0.67 25.40 16
20 O -0.61 -36.84 16.73 -4.61 -0.08 -36.91 16
21 H 0.11 3.41 8.05 -2.39 -0.02 3.39 16
22 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16
23 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16
24 H 0.04 1.38 8.05 -2.39 -0.02 1.36 16
25 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16
26 H 0.05 1.46 8.05 -2.39 -0.02 1.44 16
27 H 0.05 1.70 7.37 -2.39 -0.02 1.68 16
28 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16
29 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16
30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16
31 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16
32 H 0.04 1.50 7.37 -2.39 -0.02 1.48 16
33 H 0.13 6.76 5.24 -2.91 -0.02 6.74 16
34 H 0.30 12.72 8.29 -92.71 -0.77 11.95 16
Total: -1.00 -66.69 284.74 5.70 -60.99
By element:
Atomic # 1 Polarization: 18.54 SS G_CDS: 1.09 Total: 19.63 kcal
Atomic # 6 Polarization: -13.29 SS G_CDS: 4.64 Total: -8.65 kcal
Atomic # 7 Polarization: -72.12 SS G_CDS: -1.98 Total: -74.10 kcal
Atomic # 8 Polarization: -36.84 SS G_CDS: -0.08 Total: -36.91 kcal
Atomic # 14 Polarization: 37.02 SS G_CDS: 2.03 Total: 39.05 kcal
Total: -66.69 5.70 -60.99 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000082451556.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.953 kcal
(2) G-P(sol) polarization free energy of solvation -66.688 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.736 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.700 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.988 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.036 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds