Wall clock time and date at job start Mon Mar 30 2020 03:39:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09002 * 109.47070 * 2 1
4 4 O 1.42903 * 109.46923 * 120.00164 * 2 1 3
5 5 C 1.50701 * 109.47419 * 239.99925 * 2 1 3
6 6 C 1.38882 * 120.74329 * 279.72208 * 5 2 1
7 7 C 1.38026 * 119.32530 * 179.75105 * 6 5 2
8 8 N 1.31970 * 120.85823 * 0.53541 * 7 6 5
9 9 C 1.32401 * 121.62052 * 359.73879 * 8 7 6
10 10 N 1.39000 * 119.70480 * 180.02562 * 9 8 7
11 11 C 1.46504 * 120.00068 * 184.97772 * 10 9 8
12 12 C 1.46506 * 120.00168 * 4.97524 * 10 9 8
13 13 C 1.50696 * 109.46859 * 90.00385 * 12 10 9
14 14 H 1.07999 * 120.00224 * 359.97438 * 13 12 10
15 15 C 1.37881 * 119.99777 * 180.02562 * 13 12 10
16 16 N 1.31505 * 119.99992 * 359.97438 * 15 13 12
17 17 Si 1.86799 * 119.99837 * 179.97438 * 15 13 12
18 18 H 1.48502 * 109.47155 * 59.99739 * 17 15 13
19 19 H 1.48499 * 109.47281 * 179.97438 * 17 15 13
20 20 H 1.48500 * 109.47274 * 299.99922 * 17 15 13
21 21 C 1.38295 * 120.74682 * 100.00016 * 5 2 1
22 22 H 1.08996 * 109.47407 * 300.00400 * 1 2 3
23 23 H 1.09000 * 109.46986 * 60.00171 * 1 2 3
24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3
25 25 H 0.96700 * 114.00234 * 59.99815 * 4 2 1
26 26 H 1.07993 * 120.33886 * 359.97438 * 6 5 2
27 27 H 1.07998 * 119.57565 * 180.29546 * 7 6 5
28 28 H 1.09002 * 109.46739 * 89.99544 * 11 10 9
29 29 H 1.08993 * 109.47125 * 210.00068 * 11 10 9
30 30 H 1.09001 * 109.46899 * 330.00275 * 11 10 9
31 31 H 1.08996 * 109.46877 * 210.00464 * 12 10 9
32 32 H 1.08993 * 109.46515 * 330.00274 * 12 10 9
33 33 H 0.97001 * 120.00394 * 179.97438 * 16 15 13
34 34 H 1.08001 * 120.45389 * 0.02562 * 21 5 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 8 2.0063 -0.6737 1.1668
5 6 2.0324 -0.7104 -1.2304
6 6 2.0791 -2.0976 -1.2800
7 6 2.5397 -2.7180 -2.4237
8 7 2.9441 -2.0104 -3.4616
9 6 2.9203 -0.6866 -3.4510
10 7 3.3553 0.0191 -4.5668
11 6 3.4349 1.4813 -4.5235
12 6 3.7342 -0.6993 -5.7861
13 6 2.5252 -0.8589 -6.6713
14 1 1.5700 -0.4650 -6.3570
15 6 2.6383 -1.5087 -7.8821
16 7 3.8013 -1.9888 -8.2646
17 14 1.1394 -1.7071 -8.9792
18 1 0.6086 -0.3677 -9.3390
19 1 1.5235 -2.4352 -10.2151
20 1 0.0947 -2.4756 -8.2558
21 6 2.4627 0.0044 -2.3334
22 1 -0.3634 0.5139 0.8899
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 1.7210 -1.5953 1.2329
26 1 1.7549 -2.6849 -0.4337
27 1 2.5732 -3.7965 -2.4685
28 1 4.4231 1.7812 -4.1748
29 1 3.2641 1.8842 -5.5217
30 1 2.6767 1.8664 -3.8416
31 1 4.5012 -0.1351 -6.3166
32 1 4.1237 -1.6825 -5.5221
33 1 3.8808 -2.4463 -9.1163
34 1 2.4446 1.0842 -2.3270
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000087414392.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:39:27
Heat of formation + Delta-G solvation = -8.526366 kcal
Electronic energy + Delta-G solvation = -16506.631331 eV
Core-core repulsion = 13825.663299 eV
Total energy + Delta-G solvation = -2680.968032 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-39.91049 -37.53538 -35.67084 -32.68374 -32.53001 -29.75692 -29.70704 -27.78569
-25.38467 -24.16164 -22.51178 -22.08386 -19.88188 -17.44798 -16.53008 -16.21507
-15.69078 -15.20641 -14.87194 -14.39103 -14.28040 -14.06100 -13.41942 -13.15616
-13.03553 -12.43371 -12.14914 -12.06619 -11.60161 -11.49943 -11.14268 -11.00262
-10.88804 -10.56816 -10.32995 -10.13143 -9.85465 -9.13987 -8.98058 -8.61525
-8.39866 -6.76815 -5.99288 -4.06745 1.78671 1.98695 3.31344 3.35680
3.38569 3.86692 4.30363 4.44368 4.56300 4.67586 5.01089 5.09493
5.19412 5.31063 5.51110 5.59061 5.61297 5.70859 5.77594 5.92756
5.97259 6.01433 6.19372 6.26530 6.40373 6.72572 6.98792 7.18796
7.51730 7.52904 7.85543 7.99333 8.27625 8.31785 8.90265 9.02473
9.57388 11.05392
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.033984 B = 0.005975 C = 0.005841
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 823.709836 B = 4684.824084 C = 4792.146122
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C 0.146 3.854
3 H 0.105 0.895
4 O -0.559 6.559
5 C -0.037 4.037
6 C -0.259 4.259
7 C 0.157 3.843
8 N -0.523 5.523
9 C 0.423 3.577
10 N -0.593 5.593
11 C 0.098 3.902
12 C 0.252 3.748
13 C -0.524 4.524
14 H 0.054 0.946
15 C 0.062 3.938
16 N -0.895 5.895
17 Si 0.896 3.104
18 H -0.278 1.278
19 H -0.286 1.286
20 H -0.277 1.277
21 C -0.253 4.253
22 H 0.064 0.936
23 H 0.069 0.931
24 H 0.061 0.939
25 H 0.374 0.626
26 H 0.117 0.883
27 H 0.147 0.853
28 H 0.042 0.958
29 H 0.074 0.926
30 H 0.057 0.943
31 H 0.027 0.973
32 H 0.051 0.949
33 H 0.263 0.737
34 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.378 3.595 14.189 15.279
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.236 4.236
2 C 0.087 3.913
3 H 0.123 0.877
4 O -0.364 6.364
5 C -0.045 4.045
6 C -0.283 4.283
7 C -0.004 4.004
8 N -0.240 5.240
9 C 0.186 3.814
10 N -0.300 5.300
11 C -0.046 4.046
12 C 0.133 3.867
13 C -0.563 4.563
14 H 0.072 0.928
15 C -0.140 4.140
16 N -0.534 5.534
17 Si 0.724 3.276
18 H -0.204 1.204
19 H -0.212 1.212
20 H -0.203 1.203
21 C -0.280 4.280
22 H 0.083 0.917
23 H 0.088 0.912
24 H 0.080 0.920
25 H 0.222 0.778
26 H 0.135 0.865
27 H 0.164 0.836
28 H 0.060 0.940
29 H 0.093 0.907
30 H 0.075 0.925
31 H 0.045 0.955
32 H 0.069 0.931
33 H 0.073 0.927
34 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges -3.610 3.815 13.160 14.169
hybrid contribution -1.455 -0.295 -0.233 1.503
sum -5.065 3.520 12.927 14.323
Atomic orbital electron populations
1.22451 0.95403 1.02966 1.02745 1.20765 0.92991 0.95810 0.81758
0.87693 1.86584 1.77497 1.29236 1.43123 1.20463 0.94839 0.94207
0.94987 1.21250 1.12197 0.94069 1.00755 1.22353 0.91187 0.99388
0.87484 1.67379 1.21418 1.06120 1.29131 1.18408 0.88288 0.88313
0.86366 1.47061 1.66295 1.04728 1.11957 1.21583 0.99856 0.80590
1.02614 1.19304 0.95377 0.93011 0.79051 1.21425 0.95564 1.36699
1.02579 0.92798 1.24910 0.96016 0.95353 0.97711 1.69918 1.23412
1.38047 1.22038 0.86598 0.83081 0.78183 0.79757 1.20361 1.21169
1.20306 1.21143 1.11410 1.00225 0.95175 0.91657 0.91247 0.91996
0.77760 0.86537 0.83596 0.93989 0.90747 0.92476 0.95499 0.93112
0.92722 0.85733
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.79 9.52 37.16 0.35 -1.44 16
2 C 0.15 1.73 3.86 -27.88 -0.11 1.63 16
3 H 0.11 1.20 8.04 -51.93 -0.42 0.78 16
4 O -0.56 -6.62 13.20 -35.23 -0.46 -7.09 16
5 C -0.04 -0.55 5.00 -104.36 -0.52 -1.07 16
6 C -0.26 -3.82 9.41 -39.42 -0.37 -4.19 16
7 C 0.16 2.75 11.17 -17.57 -0.20 2.55 16
8 N -0.52 -11.54 9.08 -12.44 -0.11 -11.65 16
9 C 0.42 8.95 7.37 -155.02 -1.14 7.81 16
10 N -0.59 -13.08 2.97 -183.10 -0.54 -13.62 16
11 C 0.10 1.68 10.28 59.85 0.62 2.29 16
12 C 0.25 6.65 5.22 -5.19 -0.03 6.62 16
13 C -0.52 -14.88 9.39 -34.44 -0.32 -15.20 16
14 H 0.05 1.55 7.81 -52.49 -0.41 1.14 16
15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16
16 N -0.90 -26.58 13.28 55.43 0.74 -25.84 16
17 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16
18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
21 C -0.25 -4.37 8.93 -39.23 -0.35 -4.72 16
22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
24 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16
25 H 0.37 3.23 7.59 45.56 0.35 3.58 16
26 H 0.12 1.30 6.89 -52.49 -0.36 0.94 16
27 H 0.15 2.14 8.06 -52.49 -0.42 1.72 16
28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16
29 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16
30 H 0.06 0.83 5.98 -51.93 -0.31 0.52 16
31 H 0.03 0.73 8.07 -51.93 -0.42 0.31 16
32 H 0.05 1.47 7.30 -51.93 -0.38 1.09 16
33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16
34 H 0.12 1.86 6.03 -52.49 -0.32 1.55 16
LS Contribution 289.70 15.07 4.37 4.37
Total: -1.00 -32.57 289.70 -7.14 -39.72
By element:
Atomic # 1 Polarization: 5.24 SS G_CDS: -3.94 Total: 1.30 kcal
Atomic # 6 Polarization: -1.89 SS G_CDS: -2.17 Total: -4.06 kcal
Atomic # 7 Polarization: -51.19 SS G_CDS: 0.08 Total: -51.11 kcal
Atomic # 8 Polarization: -6.62 SS G_CDS: -0.46 Total: -7.09 kcal
Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal
Total LS contribution 4.37 Total: 4.37 kcal
Total: -32.57 -7.14 -39.72 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000087414392.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.190 kcal
(2) G-P(sol) polarization free energy of solvation -32.571 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.382 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.145 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.716 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.526 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds