Wall clock time and date at job start Mon Mar 30 2020 03:39:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09002 * 109.47070 * 2 1
4 4 O 1.42903 * 109.46923 * 120.00164 * 2 1 3
5 5 C 1.50701 * 109.47419 * 239.99925 * 2 1 3
6 6 C 1.38882 * 120.74329 * 279.72208 * 5 2 1
7 7 C 1.38026 * 119.32530 * 179.75105 * 6 5 2
8 8 N 1.31970 * 120.85823 * 0.53541 * 7 6 5
9 9 C 1.32401 * 121.62052 * 359.73879 * 8 7 6
10 10 N 1.39000 * 119.70480 * 180.02562 * 9 8 7
11 11 C 1.46504 * 120.00068 * 184.97772 * 10 9 8
12 12 C 1.46506 * 120.00168 * 4.97524 * 10 9 8
13 13 C 1.50696 * 109.46859 * 90.00385 * 12 10 9
14 14 H 1.07999 * 120.00224 * 359.97438 * 13 12 10
15 15 C 1.37881 * 119.99777 * 180.02562 * 13 12 10
16 16 N 1.31505 * 119.99992 * 359.97438 * 15 13 12
17 17 Si 1.86799 * 119.99837 * 179.97438 * 15 13 12
18 18 H 1.48502 * 109.47155 * 59.99739 * 17 15 13
19 19 H 1.48499 * 109.47281 * 179.97438 * 17 15 13
20 20 H 1.48500 * 109.47274 * 299.99922 * 17 15 13
21 21 C 1.38295 * 120.74682 * 100.00016 * 5 2 1
22 22 H 1.08996 * 109.47407 * 300.00400 * 1 2 3
23 23 H 1.09000 * 109.46986 * 60.00171 * 1 2 3
24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3
25 25 H 0.96700 * 114.00234 * 59.99815 * 4 2 1
26 26 H 1.07993 * 120.33886 * 359.97438 * 6 5 2
27 27 H 1.07998 * 119.57565 * 180.29546 * 7 6 5
28 28 H 1.09002 * 109.46739 * 89.99544 * 11 10 9
29 29 H 1.08993 * 109.47125 * 210.00068 * 11 10 9
30 30 H 1.09001 * 109.46899 * 330.00275 * 11 10 9
31 31 H 1.08996 * 109.46877 * 210.00464 * 12 10 9
32 32 H 1.08993 * 109.46515 * 330.00274 * 12 10 9
33 33 H 0.97001 * 120.00394 * 179.97438 * 16 15 13
34 34 H 1.08001 * 120.45389 * 0.02562 * 21 5 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 8 2.0063 -0.6737 1.1668
5 6 2.0324 -0.7104 -1.2304
6 6 2.0791 -2.0976 -1.2800
7 6 2.5397 -2.7180 -2.4237
8 7 2.9441 -2.0104 -3.4616
9 6 2.9203 -0.6866 -3.4510
10 7 3.3553 0.0191 -4.5668
11 6 3.4349 1.4813 -4.5235
12 6 3.7342 -0.6993 -5.7861
13 6 2.5252 -0.8589 -6.6713
14 1 1.5700 -0.4650 -6.3570
15 6 2.6383 -1.5087 -7.8821
16 7 3.8013 -1.9888 -8.2646
17 14 1.1394 -1.7071 -8.9792
18 1 0.6086 -0.3677 -9.3390
19 1 1.5235 -2.4352 -10.2151
20 1 0.0947 -2.4756 -8.2558
21 6 2.4627 0.0044 -2.3334
22 1 -0.3634 0.5139 0.8899
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 1.7210 -1.5953 1.2329
26 1 1.7549 -2.6849 -0.4337
27 1 2.5732 -3.7965 -2.4685
28 1 4.4231 1.7812 -4.1748
29 1 3.2641 1.8842 -5.5217
30 1 2.6767 1.8664 -3.8416
31 1 4.5012 -0.1351 -6.3166
32 1 4.1237 -1.6825 -5.5221
33 1 3.8808 -2.4463 -9.1163
34 1 2.4446 1.0842 -2.3270
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000087414392.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:39:26
Heat of formation + Delta-G solvation = -31.043938 kcal
Electronic energy + Delta-G solvation = -16507.607766 eV
Core-core repulsion = 13825.663299 eV
Total energy + Delta-G solvation = -2681.944467 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-41.24591 -38.63496 -37.18203 -34.75529 -33.73300 -31.21824 -30.78450 -29.53226
-27.01020 -25.48649 -24.16446 -23.36123 -21.26111 -18.72600 -18.53804 -17.66783
-16.91673 -16.61829 -16.38519 -15.80860 -15.72586 -15.29736 -14.71261 -14.54922
-14.40013 -13.93479 -13.53385 -13.29549 -13.15511 -12.92565 -12.71377 -12.64240
-12.37810 -12.11617 -11.97845 -11.78662 -11.32266 -10.67344 -10.61739 -10.36092
-10.01634 -8.46335 -8.02800 -6.33123 0.47810 0.64896 1.35829 1.38915
1.46928 2.30143 2.45889 3.09349 3.10115 3.56245 3.58290 3.82504
4.09972 4.22591 4.32914 4.40220 4.42654 4.58346 4.66238 4.76887
4.87478 4.94532 4.99281 5.07783 5.16808 5.26676 5.31124 5.52592
5.65815 5.88815 6.09777 6.30423 6.63459 6.80405 6.82083 7.35077
7.55637 8.87477
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.033984 B = 0.005975 C = 0.005841
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 823.709836 B = 4684.824084 C = 4792.146122
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.153 3.847
3 H 0.112 0.888
4 O -0.567 6.567
5 C -0.035 4.035
6 C -0.239 4.239
7 C 0.132 3.868
8 N -0.579 5.579
9 C 0.390 3.610
10 N -0.614 5.614
11 C 0.097 3.903
12 C 0.272 3.728
13 C -0.535 4.535
14 H 0.045 0.955
15 C 0.010 3.990
16 N -0.928 5.928
17 Si 0.964 3.036
18 H -0.266 1.266
19 H -0.278 1.278
20 H -0.277 1.277
21 C -0.252 4.252
22 H 0.082 0.918
23 H 0.064 0.936
24 H 0.067 0.933
25 H 0.389 0.611
26 H 0.160 0.840
27 H 0.165 0.835
28 H 0.058 0.942
29 H 0.064 0.936
30 H 0.085 0.915
31 H 0.007 0.993
32 H 0.013 0.987
33 H 0.266 0.734
34 H 0.146 0.854
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.269 4.105 16.150 17.804
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.231 4.231
2 C 0.094 3.906
3 H 0.130 0.870
4 O -0.375 6.375
5 C -0.043 4.043
6 C -0.262 4.262
7 C -0.026 4.026
8 N -0.297 5.297
9 C 0.155 3.845
10 N -0.324 5.324
11 C -0.045 4.045
12 C 0.151 3.849
13 C -0.574 4.574
14 H 0.064 0.936
15 C -0.189 4.189
16 N -0.568 5.568
17 Si 0.789 3.211
18 H -0.190 1.190
19 H -0.203 1.203
20 H -0.202 1.202
21 C -0.277 4.277
22 H 0.100 0.900
23 H 0.083 0.917
24 H 0.086 0.914
25 H 0.239 0.761
26 H 0.178 0.822
27 H 0.182 0.818
28 H 0.076 0.924
29 H 0.083 0.917
30 H 0.103 0.897
31 H 0.025 0.975
32 H 0.031 0.969
33 H 0.075 0.925
34 H 0.164 0.836
Dipole moment (debyes) X Y Z Total
from point charges -5.517 4.318 15.178 16.717
hybrid contribution -0.864 -0.521 -0.663 1.208
sum -6.381 3.797 14.515 16.304
Atomic orbital electron populations
1.22410 0.93705 1.03582 1.03357 1.20774 0.94076 0.95660 0.80116
0.86999 1.86582 1.77784 1.30531 1.42589 1.20966 0.93348 0.94504
0.95518 1.21697 1.09241 0.94523 1.00704 1.22817 0.91669 1.00358
0.87750 1.67269 1.23271 1.07390 1.31787 1.18758 0.89990 0.88529
0.87232 1.46923 1.68108 1.06207 1.11170 1.21732 1.01749 0.78124
1.02918 1.18672 0.94151 0.91443 0.80668 1.21653 0.95745 1.36734
1.03269 0.93631 1.25794 0.99061 0.94864 0.99174 1.70043 1.25517
1.38689 1.22599 0.85525 0.79137 0.78629 0.77816 1.19033 1.20259
1.20248 1.21360 1.10558 1.01384 0.94427 0.89960 0.91742 0.91432
0.76091 0.82237 0.81791 0.92392 0.91707 0.89687 0.97462 0.96900
0.92496 0.83605
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.80 9.52 71.98 0.69 -2.11 16
2 C 0.15 3.06 3.86 29.85 0.12 3.17 16
3 H 0.11 2.13 8.04 -2.39 -0.02 2.11 16
4 O -0.57 -11.10 13.20 -148.98 -1.97 -13.07 16
5 C -0.04 -0.95 5.00 -19.70 -0.10 -1.05 16
6 C -0.24 -6.39 9.41 22.37 0.21 -6.18 16
7 C 0.13 4.57 11.17 84.62 0.95 5.52 16
8 N -0.58 -26.21 9.08 -193.26 -1.75 -27.96 16
9 C 0.39 16.70 7.37 133.06 0.98 17.69 16
10 N -0.61 -27.91 2.97 -733.22 -2.18 -30.09 16
11 C 0.10 3.34 10.28 127.77 1.31 4.65 16
12 C 0.27 15.15 5.22 85.63 0.45 15.60 16
13 C -0.54 -31.41 9.39 25.60 0.24 -31.17 16
14 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16
15 C 0.01 0.57 5.46 84.66 0.46 1.03 16
16 N -0.93 -56.74 13.28 21.45 0.28 -56.45 16
17 Si 0.96 45.39 29.54 68.60 2.03 47.42 16
18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16
19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16
20 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16
21 C -0.25 -8.31 8.93 22.50 0.20 -8.11 16
22 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16
23 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16
24 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16
25 H 0.39 4.91 7.59 -74.06 -0.56 4.34 16
26 H 0.16 2.81 6.89 -2.91 -0.02 2.79 16
27 H 0.16 4.73 8.06 -2.91 -0.02 4.71 16
28 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16
29 H 0.06 2.29 8.07 -2.39 -0.02 2.27 16
30 H 0.08 2.36 5.98 -2.39 -0.01 2.35 16
31 H 0.01 0.43 8.07 -2.39 -0.02 0.41 16
32 H 0.01 0.80 7.30 -2.39 -0.02 0.78 16
33 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16
34 H 0.15 4.02 6.03 -2.91 -0.02 4.00 16
Total: -1.00 -73.01 289.70 2.45 -70.56
By element:
Atomic # 1 Polarization: 10.03 SS G_CDS: 0.54 Total: 10.56 kcal
Atomic # 6 Polarization: -6.47 SS G_CDS: 5.50 Total: -0.96 kcal
Atomic # 7 Polarization: -110.86 SS G_CDS: -3.65 Total: -114.51 kcal
Atomic # 8 Polarization: -11.10 SS G_CDS: -1.97 Total: -13.07 kcal
Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal
Total: -73.01 2.45 -70.56 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000087414392.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.514 kcal
(2) G-P(sol) polarization free energy of solvation -73.010 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.495 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.558 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.044 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds