Wall clock time and date at job start Mon Mar 30 2020 03:43:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35682 * 116.99568 * 2 1
4 4 C 1.38608 * 119.63948 * 179.72666 * 3 2 1
5 5 C 1.39205 * 119.01562 * 180.27819 * 4 3 2
6 6 N 1.39189 * 120.83038 * 180.02562 * 5 4 3
7 7 C 1.46505 * 120.00067 * 354.23619 * 6 5 4
8 8 C 1.46498 * 120.00023 * 174.23360 * 6 5 4
9 9 H 1.09002 * 109.47232 * 4.60709 * 8 6 5
10 10 C 1.53007 * 109.47292 * 124.60604 * 8 6 5
11 11 C 1.50702 * 109.47290 * 244.60651 * 8 6 5
12 12 H 1.07994 * 120.00150 * 359.97438 * 11 8 6
13 13 C 1.37877 * 120.00185 * 179.97438 * 11 8 6
14 14 N 1.31517 * 120.00061 * 0.02562 * 13 11 8
15 15 Si 1.86799 * 120.00340 * 179.97438 * 13 11 8
16 16 H 1.48496 * 109.46875 * 59.99925 * 15 13 11
17 17 H 1.48497 * 109.47334 * 179.97438 * 15 13 11
18 18 H 1.48498 * 109.46967 * 300.00140 * 15 13 11
19 19 C 1.39642 * 118.33678 * 0.02562 * 5 4 3
20 20 C 1.37749 * 119.19463 * 359.97438 * 19 5 4
21 21 N 1.32087 * 120.90690 * 0.02562 * 20 19 5
22 22 H 1.08999 * 109.47110 * 179.97438 * 1 2 3
23 23 H 1.09003 * 109.47556 * 299.99591 * 1 2 3
24 24 H 1.09003 * 109.47313 * 59.99972 * 1 2 3
25 25 H 1.07995 * 120.49215 * 0.27692 * 4 3 2
26 26 H 1.09000 * 109.46648 * 90.00017 * 7 6 5
27 27 H 1.09002 * 109.46954 * 209.99494 * 7 6 5
28 28 H 1.08996 * 109.47073 * 329.99907 * 7 6 5
29 29 H 1.09000 * 109.47143 * 179.97438 * 10 8 6
30 30 H 1.08994 * 109.46685 * 300.00096 * 10 8 6
31 31 H 1.09002 * 109.46897 * 59.99900 * 10 8 6
32 32 H 0.96996 * 120.00674 * 180.02562 * 14 13 11
33 33 H 1.08004 * 120.40549 * 180.02562 * 19 5 4
34 34 H 1.07994 * 119.54881 * 179.97438 * 20 19 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0449 1.2090 0.0000
4 6 3.4295 1.2729 0.0057
5 6 4.0478 2.5201 0.0116
6 7 5.4355 2.6283 0.0169
7 6 6.2635 1.4264 0.1439
8 6 6.0681 3.9441 -0.1045
9 1 5.3002 4.7177 -0.1060
10 6 7.0137 4.1664 1.0777
11 6 6.8492 4.0092 -1.3916
12 1 6.8725 3.1557 -2.0529
13 6 7.5341 5.1584 -1.7250
14 7 7.5062 6.1976 -0.9196
15 14 8.5029 5.2388 -3.3201
16 1 7.5858 5.0221 -4.4677
17 1 9.1430 6.5730 -3.4438
18 1 9.5496 4.1854 -3.3172
19 6 3.2410 3.6599 0.0119
20 6 1.8714 3.5136 0.0060
21 7 1.3171 2.3146 0.0005
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3634 0.5138 0.8900
24 1 -0.3634 0.5138 -0.8900
25 1 4.0198 0.3686 0.0057
26 1 6.4805 1.0284 -0.8474
27 1 7.1972 1.6798 0.6461
28 1 5.7289 0.6768 0.7273
29 1 7.4847 5.1452 0.9871
30 1 6.4487 4.1194 2.0086
31 1 7.7816 3.3928 1.0792
32 1 7.9878 7.0063 -1.1542
33 1 3.6855 4.6442 0.0160
34 1 1.2420 4.3912 0.0067
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000122421709.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:43:17
Heat of formation + Delta-G solvation = 7.303425 kcal
Electronic energy + Delta-G solvation = -16685.324981 eV
Core-core repulsion = 14005.043380 eV
Total energy + Delta-G solvation = -2680.281601 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.02809 -37.96077 -36.24542 -33.23984 -30.88496 -30.20650 -28.95274 -26.82368
-25.92785 -25.23669 -22.58197 -21.87131 -19.81578 -17.65278 -16.73770 -16.46587
-15.60279 -15.43594 -14.96879 -14.42727 -14.04898 -13.78215 -13.47629 -13.19155
-12.73779 -12.66604 -11.88489 -11.59558 -11.54204 -11.28326 -10.97849 -10.95145
-10.79321 -10.65000 -10.31962 -10.14895 -9.83644 -9.15438 -9.01372 -8.52731
-8.02701 -6.82899 -6.15633 -4.26133 1.84008 2.21317 3.23070 3.28063
3.30516 3.42768 4.04181 4.33260 4.47716 4.91247 5.12628 5.41879
5.49606 5.52214 5.73012 5.80369 5.82758 5.85769 6.07649 6.16209
6.32406 6.45735 6.64370 6.66976 6.77206 6.85948 6.95547 7.26966
7.55840 7.73665 7.77476 8.02490 8.17168 8.37047 8.54039 8.79415
9.41205 10.86742
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.036710 B = 0.006071 C = 0.006005
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 762.556366 B = 4610.979935 C = 4661.947090
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.045 3.955
2 O -0.316 6.316
3 C 0.346 3.654
4 C -0.291 4.291
5 C 0.296 3.704
6 N -0.589 5.589
7 C 0.095 3.905
8 C 0.262 3.738
9 H 0.056 0.944
10 C -0.151 4.151
11 C -0.528 4.528
12 H 0.059 0.941
13 C 0.066 3.934
14 N -0.890 5.890
15 Si 0.899 3.101
16 H -0.276 1.276
17 H -0.286 1.286
18 H -0.276 1.276
19 C -0.276 4.276
20 C 0.163 3.837
21 N -0.598 5.598
22 H 0.087 0.913
23 H 0.054 0.946
24 H 0.054 0.946
25 H 0.130 0.870
26 H 0.045 0.955
27 H 0.071 0.929
28 H 0.054 0.946
29 H 0.095 0.905
30 H 0.014 0.986
31 H 0.032 0.968
32 H 0.265 0.735
33 H 0.140 0.860
34 H 0.150 0.850
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.424 -7.035 2.810 10.607
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.050 4.050
2 O -0.224 6.224
3 C 0.169 3.831
4 C -0.318 4.318
5 C 0.178 3.822
6 N -0.293 5.293
7 C -0.049 4.049
8 C 0.162 3.838
9 H 0.073 0.927
10 C -0.209 4.209
11 C -0.566 4.566
12 H 0.077 0.923
13 C -0.136 4.136
14 N -0.528 5.528
15 Si 0.727 3.273
16 H -0.202 1.202
17 H -0.211 1.211
18 H -0.202 1.202
19 C -0.302 4.302
20 C 0.010 3.990
21 N -0.327 5.327
22 H 0.105 0.895
23 H 0.073 0.927
24 H 0.073 0.927
25 H 0.147 0.853
26 H 0.064 0.936
27 H 0.090 0.910
28 H 0.072 0.928
29 H 0.114 0.886
30 H 0.033 0.967
31 H 0.051 0.949
32 H 0.075 0.925
33 H 0.158 0.842
34 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges -7.861 -7.143 2.827 10.992
hybrid contribution 1.312 0.286 -0.935 1.637
sum -6.549 -6.857 1.892 9.669
Atomic orbital electron populations
1.22700 0.78256 1.01888 1.02178 1.86176 1.22113 1.25653 1.88453
1.19313 0.88554 0.84261 0.91019 1.20225 0.91970 0.97524 1.22075
1.17840 0.84896 0.92340 0.87107 1.47259 1.00762 1.09013 1.72233
1.21519 0.95580 0.87141 1.00615 1.19047 0.92321 0.78120 0.94329
0.92670 1.22138 0.99307 1.03862 0.95627 1.21338 1.30794 0.99900
1.04614 0.92254 1.24884 0.96242 0.95345 0.97170 1.69842 1.42650
1.03791 1.36511 0.86532 0.80087 0.77222 0.83469 1.20188 1.21109
1.20203 1.21674 0.94244 0.99155 1.15160 1.21899 0.92073 0.93157
0.91846 1.67235 1.40439 0.98510 1.26548 0.89506 0.92718 0.92686
0.85251 0.93606 0.90992 0.92775 0.88647 0.96732 0.94854 0.92511
0.84245 0.83308
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.05 0.56 10.38 101.05 1.05 1.61 16
2 O -0.32 -5.20 10.47 -18.75 -0.20 -5.39 16
3 C 0.35 6.35 7.48 -17.18 -0.13 6.23 16
4 C -0.29 -5.46 9.15 -39.09 -0.36 -5.82 16
5 C 0.30 5.97 6.56 -83.64 -0.55 5.42 16
6 N -0.59 -12.35 2.87 -173.14 -0.50 -12.85 16
7 C 0.09 1.70 9.54 59.85 0.57 2.27 16
8 C 0.26 6.20 2.59 -69.08 -0.18 6.03 16
9 H 0.06 1.39 5.39 -51.93 -0.28 1.12 16
10 C -0.15 -3.42 8.86 37.16 0.33 -3.09 16
11 C -0.53 -13.73 8.44 -34.44 -0.29 -14.02 16
12 H 0.06 1.57 7.78 -52.49 -0.41 1.16 16
13 C 0.07 1.73 5.30 -17.82 -0.09 1.63 16
14 N -0.89 -23.84 11.32 55.43 0.63 -23.21 16
15 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16
16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
17 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16
18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16
19 C -0.28 -5.34 9.36 -39.24 -0.37 -5.71 16
20 C 0.16 2.82 11.17 -17.62 -0.20 2.62 16
21 N -0.60 -10.81 9.21 -13.43 -0.12 -10.93 16
22 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16
23 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16
24 H 0.05 0.68 8.10 -51.93 -0.42 0.26 16
25 H 0.13 2.25 6.43 -52.49 -0.34 1.91 16
26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
27 H 0.07 1.26 6.20 -51.93 -0.32 0.94 16
28 H 0.05 0.84 6.51 -51.93 -0.34 0.50 16
29 H 0.10 2.37 6.07 -51.93 -0.32 2.05 16
30 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16
31 H 0.03 0.71 6.53 -51.93 -0.34 0.38 16
32 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16
33 H 0.14 2.77 5.87 -52.48 -0.31 2.46 16
34 H 0.15 2.08 8.06 -52.49 -0.42 1.65 16
LS Contribution 281.34 15.07 4.24 4.24
Total: -1.00 -28.04 281.34 -5.50 -33.54
By element:
Atomic # 1 Polarization: 6.23 SS G_CDS: -4.32 Total: 1.91 kcal
Atomic # 6 Polarization: -2.62 SS G_CDS: -0.21 Total: -2.83 kcal
Atomic # 7 Polarization: -47.00 SS G_CDS: 0.01 Total: -46.99 kcal
Atomic # 8 Polarization: -5.20 SS G_CDS: -0.20 Total: -5.39 kcal
Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal
Total LS contribution 4.24 Total: 4.24 kcal
Total: -28.04 -5.50 -33.54 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000122421709.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.839 kcal
(2) G-P(sol) polarization free energy of solvation -28.035 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.804 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.500 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.536 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.303 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds