Wall clock time and date at job start Mon Mar 30 2020 03:43:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35682 * 116.99568 * 2 1
4 4 C 1.38608 * 119.63948 * 179.72666 * 3 2 1
5 5 C 1.39205 * 119.01562 * 180.27819 * 4 3 2
6 6 N 1.39189 * 120.83038 * 180.02562 * 5 4 3
7 7 C 1.46505 * 120.00067 * 354.23619 * 6 5 4
8 8 C 1.46498 * 120.00023 * 174.23360 * 6 5 4
9 9 H 1.09002 * 109.47232 * 4.60709 * 8 6 5
10 10 C 1.53007 * 109.47292 * 124.60604 * 8 6 5
11 11 C 1.50702 * 109.47290 * 244.60651 * 8 6 5
12 12 H 1.07994 * 120.00150 * 359.97438 * 11 8 6
13 13 C 1.37877 * 120.00185 * 179.97438 * 11 8 6
14 14 N 1.31517 * 120.00061 * 0.02562 * 13 11 8
15 15 Si 1.86799 * 120.00340 * 179.97438 * 13 11 8
16 16 H 1.48496 * 109.46875 * 59.99925 * 15 13 11
17 17 H 1.48497 * 109.47334 * 179.97438 * 15 13 11
18 18 H 1.48498 * 109.46967 * 300.00140 * 15 13 11
19 19 C 1.39642 * 118.33678 * 0.02562 * 5 4 3
20 20 C 1.37749 * 119.19463 * 359.97438 * 19 5 4
21 21 N 1.32087 * 120.90690 * 0.02562 * 20 19 5
22 22 H 1.08999 * 109.47110 * 179.97438 * 1 2 3
23 23 H 1.09003 * 109.47556 * 299.99591 * 1 2 3
24 24 H 1.09003 * 109.47313 * 59.99972 * 1 2 3
25 25 H 1.07995 * 120.49215 * 0.27692 * 4 3 2
26 26 H 1.09000 * 109.46648 * 90.00017 * 7 6 5
27 27 H 1.09002 * 109.46954 * 209.99494 * 7 6 5
28 28 H 1.08996 * 109.47073 * 329.99907 * 7 6 5
29 29 H 1.09000 * 109.47143 * 179.97438 * 10 8 6
30 30 H 1.08994 * 109.46685 * 300.00096 * 10 8 6
31 31 H 1.09002 * 109.46897 * 59.99900 * 10 8 6
32 32 H 0.96996 * 120.00674 * 180.02562 * 14 13 11
33 33 H 1.08004 * 120.40549 * 180.02562 * 19 5 4
34 34 H 1.07994 * 119.54881 * 179.97438 * 20 19 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0449 1.2090 0.0000
4 6 3.4295 1.2729 0.0057
5 6 4.0478 2.5201 0.0116
6 7 5.4355 2.6283 0.0169
7 6 6.2635 1.4264 0.1439
8 6 6.0681 3.9441 -0.1045
9 1 5.3002 4.7177 -0.1060
10 6 7.0137 4.1664 1.0777
11 6 6.8492 4.0092 -1.3916
12 1 6.8725 3.1557 -2.0529
13 6 7.5341 5.1584 -1.7250
14 7 7.5062 6.1976 -0.9196
15 14 8.5029 5.2388 -3.3201
16 1 7.5858 5.0221 -4.4677
17 1 9.1430 6.5730 -3.4438
18 1 9.5496 4.1854 -3.3172
19 6 3.2410 3.6599 0.0119
20 6 1.8714 3.5136 0.0060
21 7 1.3171 2.3146 0.0005
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3634 0.5138 0.8900
24 1 -0.3634 0.5138 -0.8900
25 1 4.0198 0.3686 0.0057
26 1 6.4805 1.0284 -0.8474
27 1 7.1972 1.6798 0.6461
28 1 5.7289 0.6768 0.7273
29 1 7.4847 5.1452 0.9871
30 1 6.4487 4.1194 2.0086
31 1 7.7816 3.3928 1.0792
32 1 7.9878 7.0063 -1.1542
33 1 3.6855 4.6442 0.0160
34 1 1.2420 4.3912 0.0067
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000122421709.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:43:16
Heat of formation + Delta-G solvation = -10.401850 kcal
Electronic energy + Delta-G solvation = -16686.092739 eV
Core-core repulsion = 14005.043380 eV
Total energy + Delta-G solvation = -2681.049359 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-41.43262 -39.36999 -37.75847 -35.08640 -32.54883 -31.61024 -30.56614 -27.96687
-27.50100 -27.12078 -24.03298 -23.42818 -21.42118 -19.10276 -18.55050 -17.94606
-16.99338 -16.83506 -16.72240 -15.88433 -15.61483 -15.33039 -14.79206 -14.66303
-14.48079 -14.02291 -13.46409 -13.21447 -13.02230 -12.82807 -12.66589 -12.62088
-12.33739 -12.22038 -12.02850 -11.86838 -11.45048 -10.95343 -10.56030 -10.43297
-9.42087 -8.46917 -8.07962 -6.30603 0.41379 0.72716 1.41652 1.42797
1.50064 2.10177 2.39246 2.62089 3.03045 3.11975 3.61170 4.11094
4.29117 4.37898 4.39848 4.52644 4.55390 4.65969 4.74397 4.79941
4.82742 4.92498 4.96743 5.03752 5.09593 5.28363 5.40255 5.48590
5.64059 5.87858 6.15150 6.40907 6.41841 6.74991 6.83057 7.11897
7.40140 8.87081
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.036710 B = 0.006071 C = 0.006005
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 762.556366 B = 4610.979935 C = 4661.947090
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.040 3.960
2 O -0.323 6.323
3 C 0.342 3.658
4 C -0.295 4.295
5 C 0.278 3.722
6 N -0.601 5.601
7 C 0.095 3.905
8 C 0.267 3.733
9 H 0.035 0.965
10 C -0.138 4.138
11 C -0.541 4.541
12 H 0.049 0.951
13 C 0.025 3.975
14 N -0.911 5.911
15 Si 0.955 3.045
16 H -0.279 1.279
17 H -0.281 1.281
18 H -0.271 1.271
19 C -0.296 4.296
20 C 0.172 3.828
21 N -0.599 5.599
22 H 0.122 0.878
23 H 0.056 0.944
24 H 0.053 0.947
25 H 0.141 0.859
26 H 0.043 0.957
27 H 0.071 0.929
28 H 0.078 0.922
29 H 0.072 0.928
30 H 0.026 0.974
31 H 0.039 0.961
32 H 0.266 0.734
33 H 0.127 0.873
34 H 0.183 0.817
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.257 -8.086 2.643 11.855
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.055 4.055
2 O -0.230 6.230
3 C 0.164 3.836
4 C -0.322 4.322
5 C 0.162 3.838
6 N -0.305 5.305
7 C -0.048 4.048
8 C 0.165 3.835
9 H 0.052 0.948
10 C -0.197 4.197
11 C -0.580 4.580
12 H 0.067 0.933
13 C -0.176 4.176
14 N -0.550 5.550
15 Si 0.781 3.219
16 H -0.204 1.204
17 H -0.206 1.206
18 H -0.196 1.196
19 C -0.322 4.322
20 C 0.019 3.981
21 N -0.328 5.328
22 H 0.141 0.859
23 H 0.074 0.926
24 H 0.072 0.928
25 H 0.159 0.841
26 H 0.061 0.939
27 H 0.090 0.910
28 H 0.097 0.903
29 H 0.091 0.909
30 H 0.045 0.955
31 H 0.058 0.942
32 H 0.075 0.925
33 H 0.145 0.855
34 H 0.200 0.800
Dipole moment (debyes) X Y Z Total
from point charges -8.716 -8.229 2.666 12.280
hybrid contribution 1.430 0.560 -0.868 1.763
sum -7.287 -7.669 1.798 10.731
Atomic orbital electron populations
1.23009 0.76023 1.04327 1.02156 1.86173 1.24298 1.24559 1.88002
1.19504 0.88709 0.85004 0.90361 1.20335 0.92524 0.97348 1.21973
1.18085 0.84694 0.93271 0.87777 1.47136 1.01369 1.08723 1.73319
1.21625 0.95588 0.86649 1.00925 1.18755 0.91679 0.79275 0.93786
0.94771 1.21950 0.99226 1.02640 0.95869 1.21556 1.31231 0.99657
1.05525 0.93291 1.25548 0.97094 0.95111 0.99798 1.69947 1.43194
1.04089 1.37722 0.85654 0.78840 0.77380 0.80008 1.20416 1.20605
1.19638 1.21732 0.95271 0.98545 1.16640 1.22379 0.91667 0.94077
0.89946 1.67358 1.40357 0.98640 1.26411 0.85946 0.92570 0.92813
0.84101 0.93853 0.91007 0.90317 0.90939 0.95500 0.94238 0.92486
0.85490 0.79996
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.87 10.38 113.37 1.18 2.05 16
2 O -0.32 -9.87 10.47 -90.01 -0.94 -10.82 16
3 C 0.34 11.97 7.48 84.70 0.63 12.60 16
4 C -0.29 -10.73 9.15 22.59 0.21 -10.52 16
5 C 0.28 11.12 6.56 38.55 0.25 11.37 16
6 N -0.60 -25.12 2.87 -701.71 -2.02 -27.14 16
7 C 0.09 3.31 9.54 127.77 1.22 4.53 16
8 C 0.27 12.79 2.59 44.25 0.11 12.91 16
9 H 0.03 1.79 5.39 -2.39 -0.01 1.78 16
10 C -0.14 -6.30 8.86 71.98 0.64 -5.66 16
11 C -0.54 -28.41 8.44 25.60 0.22 -28.19 16
12 H 0.05 2.61 7.78 -2.91 -0.02 2.59 16
13 C 0.02 1.30 5.30 84.65 0.45 1.75 16
14 N -0.91 -49.26 11.32 21.45 0.24 -49.02 16
15 Si 0.96 42.07 29.54 68.60 2.03 44.10 16
16 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16
17 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16
18 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16
19 C -0.30 -11.40 9.36 22.49 0.21 -11.19 16
20 C 0.17 5.71 11.17 84.54 0.94 6.65 16
21 N -0.60 -20.51 9.21 -309.20 -2.85 -23.36 16
22 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16
23 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16
24 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16
25 H 0.14 4.67 6.43 -2.91 -0.02 4.65 16
26 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16
27 H 0.07 2.47 6.20 -2.39 -0.01 2.45 16
28 H 0.08 2.31 6.51 -2.39 -0.02 2.30 16
29 H 0.07 3.65 6.07 -2.39 -0.01 3.63 16
30 H 0.03 1.10 8.14 -2.39 -0.02 1.09 16
31 H 0.04 1.69 6.53 -2.39 -0.02 1.68 16
32 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16
33 H 0.13 5.18 5.87 -2.91 -0.02 5.16 16
34 H 0.18 4.66 8.06 -2.91 -0.02 4.64 16
Total: -1.00 -58.79 281.34 3.62 -55.17
By element:
Atomic # 1 Polarization: 13.66 SS G_CDS: 1.10 Total: 14.76 kcal
Atomic # 6 Polarization: -9.76 SS G_CDS: 6.06 Total: -3.70 kcal
Atomic # 7 Polarization: -94.89 SS G_CDS: -4.62 Total: -99.52 kcal
Atomic # 8 Polarization: -9.87 SS G_CDS: -0.94 Total: -10.82 kcal
Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal
Total: -58.79 3.62 -55.17 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000122421709.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.771 kcal
(2) G-P(sol) polarization free energy of solvation -58.793 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.023 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.621 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.173 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.402 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds