Wall clock time and date at job start Mon Mar 30 2020 03:47:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46504 * 109.47181 * 2 1
4 4 C 1.38699 * 125.98170 * 89.97311 * 3 2 1
5 5 C 1.32866 * 107.91284 * 180.02562 * 4 3 2
6 6 N 1.38694 * 107.91559 * 0.02562 * 5 4 3
7 7 C 1.46500 * 125.98425 * 179.97438 * 6 5 4
8 8 C 1.53002 * 109.46950 * 95.25346 * 7 6 5
9 9 C 1.50698 * 115.54999 * 299.98405 * 8 7 6
10 10 H 1.07996 * 120.00013 * 99.30016 * 9 8 7
11 11 C 1.37879 * 119.99859 * 279.29758 * 9 8 7
12 12 N 1.31522 * 120.00205 * 5.09247 * 11 9 8
13 13 Si 1.86795 * 120.00100 * 185.08737 * 11 9 8
14 14 H 1.48496 * 109.47238 * 179.97438 * 13 11 9
15 15 H 1.48494 * 109.47511 * 300.00681 * 13 11 9
16 16 H 1.48511 * 109.46920 * 60.00361 * 13 11 9
17 17 C 1.53005 * 117.51754 * 85.68528 * 8 7 6
18 18 C 1.53007 * 117.49747 * 154.31412 * 8 7 6
19 19 C 1.34753 * 125.98588 * 270.30608 * 3 2 1
20 20 O 1.21795 * 125.94562 * 359.97438 * 19 3 2
21 21 H 1.08996 * 109.47459 * 180.02562 * 1 2 3
22 22 H 1.09004 * 109.47035 * 300.00249 * 1 2 3
23 23 H 1.09001 * 109.46903 * 59.99490 * 1 2 3
24 24 H 1.08993 * 109.47491 * 239.99766 * 2 1 3
25 25 H 1.09008 * 109.47011 * 119.99854 * 2 1 3
26 26 H 1.07998 * 126.04804 * 0.02614 * 4 3 2
27 27 H 1.07997 * 126.04448 * 180.02562 * 5 4 3
28 28 H 1.08997 * 109.47314 * 335.25130 * 7 6 5
29 29 H 1.09005 * 109.47070 * 215.25172 * 7 6 5
30 30 H 0.96992 * 119.99847 * 174.99515 * 12 11 9
31 31 H 1.08992 * 117.49617 * 214.96711 * 17 8 7
32 32 H 1.08998 * 117.49578 * 359.97438 * 17 8 7
33 33 H 1.09004 * 117.49401 * 359.97438 * 18 8 7
34 34 H 1.08997 * 117.49916 * 144.97310 * 18 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2895 2.1497 1.1224
5 6 2.7102 3.3407 0.7103
6 7 2.7087 3.3373 -0.6767
7 6 3.1021 4.4531 -1.5406
8 6 4.5678 4.2902 -1.9484
9 6 5.5589 4.2627 -0.8135
10 1 5.9400 3.3190 -0.4521
11 6 5.9793 5.4423 -0.2366
12 7 5.4417 6.5839 -0.6076
13 14 7.3121 5.4192 1.0719
14 1 7.5818 6.8062 1.5284
15 1 6.8610 4.5974 2.2236
16 1 8.5537 4.8354 0.5035
17 6 4.8690 3.4205 -3.1707
18 6 5.0129 4.9412 -3.2595
19 6 2.2768 2.1297 -1.0904
20 8 2.1454 1.7755 -2.2482
21 1 -0.3634 -1.0276 0.0005
22 1 -0.3633 0.5139 0.8900
23 1 -0.3633 0.5139 -0.8900
24 1 1.8933 -0.5138 -0.8899
25 1 1.8933 -0.5139 0.8901
26 1 2.1783 1.8356 2.1497
27 1 3.0018 4.1657 1.3433
28 1 2.9773 5.3920 -1.0011
29 1 2.4755 4.4605 -2.4326
30 1 5.6844 7.4050 -0.1518
31 1 5.7841 2.8286 -3.1539
32 1 4.0230 2.9640 -3.6843
33 1 4.2614 5.4852 -3.8317
34 1 6.0225 5.3500 -3.3011
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000124743854.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:47:47
Heat of formation + Delta-G solvation = 23.834290 kcal
Electronic energy + Delta-G solvation = -17194.753735 eV
Core-core repulsion = 14515.188966 eV
Total energy + Delta-G solvation = -2679.564769 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-42.96387 -38.64084 -37.60142 -36.10762 -34.01596 -32.39885 -29.44661 -28.14191
-27.20856 -24.38475 -23.04018 -22.52106 -21.43678 -20.83328 -18.57445 -17.70185
-17.14518 -16.67958 -16.34268 -15.98531 -15.48815 -15.11261 -14.90991 -14.67544
-14.19249 -13.79445 -13.60695 -13.14714 -12.92952 -12.85819 -12.77280 -12.57447
-12.29632 -12.14017 -12.04551 -11.65699 -11.18266 -10.86681 -10.64708 -10.29931
-10.07111 -8.43526 -8.08808 -6.20396 1.44244 1.47737 1.53138 1.54414
1.65413 2.09282 2.44620 2.83822 3.19206 3.48685 3.92958 4.19329
4.27314 4.30778 4.40872 4.52881 4.56797 4.59030 4.74481 4.77292
4.86535 4.94545 4.96110 5.00809 5.15023 5.27542 5.40155 5.50635
5.55508 5.75484 5.76934 6.23102 6.41489 6.74867 6.82225 7.46663
7.53528 8.99102
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.028608 B = 0.008643 C = 0.007347
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 978.501123 B = 3238.960278 C = 3810.020482
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.122 3.878
3 N -0.533 5.533
4 C -0.023 4.023
5 C -0.003 4.003
6 N -0.512 5.512
7 C 0.182 3.818
8 C 0.011 3.989
9 C -0.497 4.497
10 H 0.039 0.961
11 C 0.039 3.961
12 N -0.903 5.903
13 Si 0.947 3.053
14 H -0.283 1.283
15 H -0.264 1.264
16 H -0.284 1.284
17 C -0.194 4.194
18 C -0.152 4.152
19 C 0.621 3.379
20 O -0.631 6.631
21 H 0.097 0.903
22 H 0.071 0.929
23 H 0.030 0.970
24 H 0.068 0.932
25 H 0.123 0.877
26 H 0.223 0.777
27 H 0.182 0.818
28 H 0.087 0.913
29 H 0.050 0.950
30 H 0.264 0.736
31 H 0.067 0.933
32 H 0.071 0.929
33 H 0.077 0.923
34 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.643 -8.034 7.424 13.344
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C 0.001 3.999
3 N -0.253 5.253
4 C -0.145 4.145
5 C -0.127 4.127
6 N -0.227 5.227
7 C 0.060 3.940
8 C 0.010 3.990
9 C -0.535 4.535
10 H 0.057 0.943
11 C -0.162 4.162
12 N -0.540 5.540
13 Si 0.773 3.227
14 H -0.208 1.208
15 H -0.188 1.188
16 H -0.210 1.210
17 C -0.231 4.231
18 C -0.190 4.190
19 C 0.323 3.677
20 O -0.515 6.515
21 H 0.115 0.885
22 H 0.090 0.910
23 H 0.049 0.951
24 H 0.086 0.914
25 H 0.141 0.859
26 H 0.239 0.761
27 H 0.199 0.801
28 H 0.105 0.895
29 H 0.068 0.932
30 H 0.073 0.927
31 H 0.086 0.914
32 H 0.089 0.911
33 H 0.096 0.904
34 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -7.693 -8.076 6.588 12.954
hybrid contribution 0.969 0.395 0.185 1.063
sum -6.724 -7.681 6.773 12.250
Atomic orbital electron populations
1.22098 0.93969 1.03789 1.01807 1.21739 0.95683 0.77852 1.04596
1.45547 1.59819 1.14220 1.05697 1.22249 1.08748 0.89859 0.93650
1.22130 1.06689 1.00999 0.82891 1.45331 1.56879 1.12871 1.07643
1.20923 0.94571 0.86432 0.92039 1.19298 0.92544 0.99050 0.88076
1.20315 1.24176 0.91870 1.17112 0.94285 1.25498 0.97575 0.94831
0.98298 1.70030 1.44080 0.98614 1.41256 0.85798 0.79876 0.77107
0.79961 1.20799 1.18831 1.21036 1.22840 1.00933 0.93329 1.06024
1.22500 1.00688 0.93146 1.02648 1.16581 0.83755 0.82153 0.85188
1.90878 1.65858 1.76549 1.18203 0.88456 0.91016 0.95116 0.91356
0.85921 0.76079 0.80132 0.89504 0.93186 0.92695 0.91395 0.91058
0.90413 0.91361
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.13 10.24 71.98 0.74 -2.39 16
2 C 0.12 2.87 6.76 86.38 0.58 3.45 16
3 N -0.53 -17.37 2.78 -656.20 -1.82 -19.19 16
4 C -0.02 -0.64 11.49 82.43 0.95 0.31 16
5 C 0.00 -0.12 11.32 82.43 0.93 0.82 16
6 N -0.51 -21.99 2.60 -656.20 -1.70 -23.70 16
7 C 0.18 8.54 5.87 86.38 0.51 9.04 16
8 C 0.01 0.58 1.53 -52.92 -0.08 0.50 16
9 C -0.50 -26.58 8.46 25.60 0.22 -26.37 16
10 H 0.04 2.18 7.82 -2.91 -0.02 2.15 16
11 C 0.04 2.03 5.42 84.65 0.46 2.49 16
12 N -0.90 -48.20 13.08 21.45 0.28 -47.92 16
13 Si 0.95 41.22 29.54 68.60 2.03 43.24 16
14 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16
15 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16
16 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16
17 C -0.19 -9.54 9.95 30.60 0.30 -9.23 16
18 C -0.15 -7.39 9.67 30.60 0.30 -7.10 16
19 C 0.62 27.06 8.52 179.07 1.53 28.59 16
20 O -0.63 -31.93 17.38 -4.65 -0.08 -32.01 16
21 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16
22 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16
23 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16
24 H 0.07 1.84 8.08 -2.39 -0.02 1.82 16
25 H 0.12 1.92 8.14 -2.38 -0.02 1.90 16
26 H 0.22 3.62 8.06 -2.91 -0.02 3.59 16
27 H 0.18 5.82 8.06 -2.91 -0.02 5.79 16
28 H 0.09 4.12 8.13 -2.39 -0.02 4.10 16
29 H 0.05 2.34 8.11 -2.38 -0.02 2.32 16
30 H 0.26 13.46 8.32 -92.71 -0.77 12.69 16
31 H 0.07 3.34 8.14 -2.39 -0.02 3.32 16
32 H 0.07 3.54 7.83 -2.39 -0.02 3.53 16
33 H 0.08 3.52 8.14 -2.38 -0.02 3.50 16
34 H 0.07 3.47 8.14 -2.39 -0.02 3.46 16
Total: -1.00 -67.63 297.32 6.20 -61.44
By element:
Atomic # 1 Polarization: 16.96 SS G_CDS: 1.07 Total: 18.02 kcal
Atomic # 6 Polarization: -6.32 SS G_CDS: 6.43 Total: 0.11 kcal
Atomic # 7 Polarization: -87.55 SS G_CDS: -3.25 Total: -90.80 kcal
Atomic # 8 Polarization: -31.93 SS G_CDS: -0.08 Total: -32.01 kcal
Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal
Total: -67.63 6.20 -61.44 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000124743854.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.273 kcal
(2) G-P(sol) polarization free energy of solvation -67.634 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.639 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.196 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.439 kcal
(6) G-S(sol) free energy of system = (1) + (5) 23.834 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds