Wall clock time and date at job start Mon Mar 30 2020 03:38:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09000 * 109.47055 * 2 1
4 4 O 1.42897 * 109.47191 * 119.99897 * 2 1 3
5 5 C 1.50707 * 109.47126 * 239.99615 * 2 1 3
6 6 C 1.38275 * 119.53409 * 125.02182 * 5 2 1
7 7 C 1.38492 * 119.24274 * 180.02562 * 6 5 2
8 8 C 1.39315 * 118.35619 * 359.74970 * 7 6 5
9 9 N 1.39705 * 120.49482 * 180.24726 * 8 7 6
10 10 C 1.46500 * 119.99967 * 0.22639 * 9 8 7
11 11 C 1.46500 * 120.00122 * 180.23037 * 9 8 7
12 12 C 1.50700 * 109.47141 * 89.99846 * 11 9 8
13 13 H 1.08003 * 120.00158 * 359.97438 * 12 11 9
14 14 C 1.37874 * 120.00064 * 180.02562 * 12 11 9
15 15 N 1.31517 * 119.99871 * 359.97438 * 14 12 11
16 16 Si 1.86799 * 120.00238 * 179.97438 * 14 12 11
17 17 H 1.48505 * 109.46975 * 59.99897 * 16 14 12
18 18 H 1.48500 * 109.47324 * 179.97438 * 16 14 12
19 19 H 1.48497 * 109.47475 * 300.00066 * 16 14 12
20 20 C 1.38893 * 119.01510 * 0.47300 * 8 7 6
21 21 N 1.31826 * 120.65561 * 359.51642 * 20 8 7
22 22 H 1.09001 * 109.47337 * 180.02562 * 1 2 3
23 23 H 1.08996 * 109.47631 * 300.00251 * 1 2 3
24 24 H 1.09004 * 109.47752 * 60.00419 * 1 2 3
25 25 H 0.96705 * 113.99905 * 60.00072 * 4 2 1
26 26 H 1.08000 * 120.37971 * 0.02562 * 6 5 2
27 27 H 1.07998 * 120.82410 * 180.02562 * 7 6 5
28 28 H 1.09004 * 109.47093 * 90.00272 * 10 9 8
29 29 H 1.08996 * 109.47166 * 210.00231 * 10 9 8
30 30 H 1.09007 * 109.46958 * 330.00350 * 10 9 8
31 31 H 1.08999 * 109.46773 * 209.99594 * 11 9 8
32 32 H 1.08991 * 109.47033 * 329.99752 * 11 9 8
33 33 H 0.97001 * 119.99689 * 180.02562 * 15 14 12
34 34 H 1.08002 * 119.67504 * 179.80082 * 20 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 8 2.0063 -0.6736 1.1668
5 6 2.0323 -0.7105 -1.2305
6 6 2.9105 -0.0636 -2.0804
7 6 3.3679 -0.7220 -3.2097
8 6 2.9249 -2.0222 -3.4425
9 7 3.3619 -2.7296 -4.5651
10 6 4.2967 -2.1066 -5.5054
11 6 2.8853 -4.0945 -4.8021
12 6 1.6280 -4.0506 -5.6317
13 1 1.2240 -3.1009 -5.9503
14 6 0.9927 -5.2226 -5.9833
15 7 1.4842 -6.3790 -5.5950
16 14 -0.5662 -5.1682 -7.0111
17 1 -0.2788 -4.5118 -8.3118
18 1 -1.0493 -6.5517 -7.2514
19 1 -1.6094 -4.3978 -6.2877
20 6 2.0387 -2.6029 -2.5445
21 7 1.6282 -1.9402 -1.4814
22 1 -0.3634 -1.0277 0.0005
23 1 -0.3634 0.5138 0.8899
24 1 -0.3635 0.5138 -0.8900
25 1 1.7210 -1.5952 1.2329
26 1 3.2359 0.9437 -1.8660
27 1 4.0545 -0.2411 -3.8906
28 1 5.3198 -2.3224 -5.1973
29 1 4.1265 -2.5058 -6.5052
30 1 4.1394 -1.0280 -5.5132
31 1 3.6513 -4.6598 -5.3330
32 1 2.6741 -4.5764 -3.8476
33 1 1.0375 -7.2036 -5.8427
34 1 1.6860 -3.6091 -2.7163
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000149522167.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:38:50
Heat of formation + Delta-G solvation = -15.949932 kcal
Electronic energy + Delta-G solvation = -16476.557250 eV
Core-core repulsion = 13795.267308 eV
Total energy + Delta-G solvation = -2681.289942 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-39.88977 -37.29529 -35.74390 -32.89370 -31.66870 -31.15866 -28.79510 -28.10525
-25.44861 -23.47353 -23.16577 -21.40291 -20.26184 -17.33130 -16.64850 -16.30977
-16.03077 -14.92725 -14.76721 -14.38393 -13.98389 -13.83868 -13.42346 -13.12257
-12.80301 -12.43539 -12.21419 -12.13000 -11.68965 -11.50188 -11.26402 -10.94715
-10.81511 -10.65634 -10.22336 -10.13157 -9.93565 -9.42227 -8.91837 -8.85192
-8.57243 -6.68501 -6.13205 -4.26676 1.79565 1.97172 3.23701 3.28720
3.31524 3.91810 4.31524 4.35201 4.73721 4.87113 5.02056 5.13913
5.32813 5.41960 5.43092 5.63776 5.69006 5.82482 5.92102 5.94586
6.10743 6.18263 6.23487 6.34826 6.61632 6.71587 6.83398 7.16724
7.23637 7.70418 7.81732 7.99529 8.06325 8.18859 8.65628 8.80820
9.40883 10.87622
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.026620 B = 0.006545 C = 0.005782
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1051.571274 B = 4276.834910 C = 4841.576674
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.172 3.828
3 H 0.100 0.900
4 O -0.565 6.565
5 C -0.006 4.006
6 C -0.109 4.109
7 C -0.186 4.186
8 C 0.195 3.805
9 N -0.604 5.604
10 C 0.095 3.905
11 C 0.247 3.753
12 C -0.538 4.538
13 H 0.059 0.941
14 C 0.064 3.936
15 N -0.892 5.892
16 Si 0.898 3.102
17 H -0.277 1.277
18 H -0.285 1.285
19 H -0.275 1.275
20 C 0.038 3.962
21 N -0.439 5.439
22 H 0.068 0.932
23 H 0.057 0.943
24 H 0.061 0.939
25 H 0.380 0.620
26 H 0.122 0.878
27 H 0.126 0.874
28 H 0.040 0.960
29 H 0.071 0.929
30 H 0.055 0.945
31 H 0.035 0.965
32 H 0.037 0.963
33 H 0.266 0.734
34 H 0.164 0.836
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.271 10.375 5.548 11.982
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.234 4.234
2 C 0.112 3.888
3 H 0.118 0.882
4 O -0.370 6.370
5 C -0.145 4.145
6 C -0.129 4.129
7 C -0.216 4.216
8 C 0.085 3.915
9 N -0.309 5.309
10 C -0.049 4.049
11 C 0.127 3.873
12 C -0.577 4.577
13 H 0.077 0.923
14 C -0.139 4.139
15 N -0.531 5.531
16 Si 0.725 3.275
17 H -0.202 1.202
18 H -0.211 1.211
19 H -0.200 1.200
20 C -0.127 4.127
21 N -0.148 5.148
22 H 0.087 0.913
23 H 0.076 0.924
24 H 0.080 0.920
25 H 0.228 0.772
26 H 0.139 0.861
27 H 0.144 0.856
28 H 0.058 0.942
29 H 0.090 0.910
30 H 0.073 0.927
31 H 0.053 0.947
32 H 0.055 0.945
33 H 0.076 0.924
34 H 0.182 0.818
Dipole moment (debyes) X Y Z Total
from point charges 2.021 10.224 6.033 12.042
hybrid contribution -0.519 -0.190 -1.627 1.718
sum 1.503 10.033 4.406 11.061
Atomic orbital electron populations
1.22406 0.95928 1.03384 1.01678 1.20470 0.92902 0.94444 0.80975
0.88187 1.86470 1.77600 1.29739 1.43228 1.21342 1.00827 0.93065
0.99274 1.21492 0.97077 0.99879 0.94483 1.20987 1.05965 0.94447
1.00234 1.19006 0.92781 0.91311 0.88425 1.47149 1.46142 1.16419
1.21202 1.21541 0.91876 0.97484 0.93960 1.19373 0.94751 0.75836
0.97304 1.21490 1.09543 0.92918 1.33723 0.92273 1.24953 0.97728
0.95199 0.95983 1.69913 1.40131 0.97559 1.45471 0.86555 0.83180
0.77158 0.80581 1.20216 1.21067 1.20040 1.22542 0.98152 1.01148
0.90844 1.67153 1.21639 1.07598 1.18394 0.91260 0.92353 0.91994
0.77177 0.86052 0.85634 0.94203 0.91003 0.92651 0.94730 0.94484
0.92414 0.81850
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.23 9.39 37.16 0.35 -1.88 16
2 C 0.17 2.37 3.91 -27.88 -0.11 2.26 16
3 H 0.10 1.20 7.86 -51.93 -0.41 0.79 16
4 O -0.56 -8.19 13.33 -35.23 -0.47 -8.66 16
5 C -0.01 -0.10 5.78 -82.57 -0.48 -0.58 16
6 C -0.11 -1.69 9.70 -39.47 -0.38 -2.08 16
7 C -0.19 -3.12 9.31 -39.09 -0.36 -3.48 16
8 C 0.20 3.85 6.57 -83.63 -0.55 3.30 16
9 N -0.60 -12.35 2.99 -180.87 -0.54 -12.90 16
10 C 0.10 1.57 10.22 59.85 0.61 2.18 16
11 C 0.25 5.95 4.93 -5.19 -0.03 5.92 16
12 C -0.54 -14.24 9.39 -34.44 -0.32 -14.56 16
13 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16
14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16
15 N -0.89 -25.00 13.29 55.43 0.74 -24.26 16
16 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16
17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
18 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16
19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16
20 C 0.04 0.79 10.38 -17.31 -0.18 0.61 16
21 N -0.44 -8.29 9.84 -9.30 -0.09 -8.38 16
22 H 0.07 0.95 7.94 -51.93 -0.41 0.54 16
23 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
25 H 0.38 4.91 9.02 45.56 0.41 5.33 16
26 H 0.12 1.49 7.94 -52.49 -0.42 1.08 16
27 H 0.13 1.81 6.27 -52.49 -0.33 1.48 16
28 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16
29 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16
30 H 0.05 0.79 6.24 -51.92 -0.32 0.47 16
31 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16
32 H 0.04 0.94 6.22 -51.93 -0.32 0.62 16
33 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16
34 H 0.16 3.63 6.16 -52.49 -0.32 3.31 16
LS Contribution 289.68 15.07 4.37 4.37
Total: -1.00 -28.87 289.68 -6.35 -35.21
By element:
Atomic # 1 Polarization: 9.16 SS G_CDS: -3.78 Total: 5.38 kcal
Atomic # 6 Polarization: -5.12 SS G_CDS: -1.55 Total: -6.66 kcal
Atomic # 7 Polarization: -45.64 SS G_CDS: 0.10 Total: -45.54 kcal
Atomic # 8 Polarization: -8.19 SS G_CDS: -0.47 Total: -8.66 kcal
Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal
Total LS contribution 4.37 Total: 4.37 kcal
Total: -28.87 -6.35 -35.21 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000149522167.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.263 kcal
(2) G-P(sol) polarization free energy of solvation -28.867 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.604 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.346 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.213 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.950 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds