Wall clock time and date at job start Mon Mar 30 2020 03:38:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09000 * 109.47055 * 2 1
4 4 O 1.42897 * 109.47191 * 119.99897 * 2 1 3
5 5 C 1.50707 * 109.47126 * 239.99615 * 2 1 3
6 6 C 1.38275 * 119.53409 * 125.02182 * 5 2 1
7 7 C 1.38492 * 119.24274 * 180.02562 * 6 5 2
8 8 C 1.39315 * 118.35619 * 359.74970 * 7 6 5
9 9 N 1.39705 * 120.49482 * 180.24726 * 8 7 6
10 10 C 1.46500 * 119.99967 * 0.22639 * 9 8 7
11 11 C 1.46500 * 120.00122 * 180.23037 * 9 8 7
12 12 C 1.50700 * 109.47141 * 89.99846 * 11 9 8
13 13 H 1.08003 * 120.00158 * 359.97438 * 12 11 9
14 14 C 1.37874 * 120.00064 * 180.02562 * 12 11 9
15 15 N 1.31517 * 119.99871 * 359.97438 * 14 12 11
16 16 Si 1.86799 * 120.00238 * 179.97438 * 14 12 11
17 17 H 1.48505 * 109.46975 * 59.99897 * 16 14 12
18 18 H 1.48500 * 109.47324 * 179.97438 * 16 14 12
19 19 H 1.48497 * 109.47475 * 300.00066 * 16 14 12
20 20 C 1.38893 * 119.01510 * 0.47300 * 8 7 6
21 21 N 1.31826 * 120.65561 * 359.51642 * 20 8 7
22 22 H 1.09001 * 109.47337 * 180.02562 * 1 2 3
23 23 H 1.08996 * 109.47631 * 300.00251 * 1 2 3
24 24 H 1.09004 * 109.47752 * 60.00419 * 1 2 3
25 25 H 0.96705 * 113.99905 * 60.00072 * 4 2 1
26 26 H 1.08000 * 120.37971 * 0.02562 * 6 5 2
27 27 H 1.07998 * 120.82410 * 180.02562 * 7 6 5
28 28 H 1.09004 * 109.47093 * 90.00272 * 10 9 8
29 29 H 1.08996 * 109.47166 * 210.00231 * 10 9 8
30 30 H 1.09007 * 109.46958 * 330.00350 * 10 9 8
31 31 H 1.08999 * 109.46773 * 209.99594 * 11 9 8
32 32 H 1.08991 * 109.47033 * 329.99752 * 11 9 8
33 33 H 0.97001 * 119.99689 * 180.02562 * 15 14 12
34 34 H 1.08002 * 119.67504 * 179.80082 * 20 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 8 2.0063 -0.6736 1.1668
5 6 2.0323 -0.7105 -1.2305
6 6 2.9105 -0.0636 -2.0804
7 6 3.3679 -0.7220 -3.2097
8 6 2.9249 -2.0222 -3.4425
9 7 3.3619 -2.7296 -4.5651
10 6 4.2967 -2.1066 -5.5054
11 6 2.8853 -4.0945 -4.8021
12 6 1.6280 -4.0506 -5.6317
13 1 1.2240 -3.1009 -5.9503
14 6 0.9927 -5.2226 -5.9833
15 7 1.4842 -6.3790 -5.5950
16 14 -0.5662 -5.1682 -7.0111
17 1 -0.2788 -4.5118 -8.3118
18 1 -1.0493 -6.5517 -7.2514
19 1 -1.6094 -4.3978 -6.2877
20 6 2.0387 -2.6029 -2.5445
21 7 1.6282 -1.9402 -1.4814
22 1 -0.3634 -1.0277 0.0005
23 1 -0.3634 0.5138 0.8899
24 1 -0.3635 0.5138 -0.8900
25 1 1.7210 -1.5952 1.2329
26 1 3.2359 0.9437 -1.8660
27 1 4.0545 -0.2411 -3.8906
28 1 5.3198 -2.3224 -5.1973
29 1 4.1265 -2.5058 -6.5052
30 1 4.1394 -1.0280 -5.5132
31 1 3.6513 -4.6598 -5.3330
32 1 2.6741 -4.5764 -3.8476
33 1 1.0375 -7.2036 -5.8427
34 1 1.6860 -3.6091 -2.7163
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000149522167.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:38:49
Heat of formation + Delta-G solvation = -35.969773 kcal
Electronic energy + Delta-G solvation = -16477.425375 eV
Core-core repulsion = 13795.267308 eV
Total energy + Delta-G solvation = -2682.158068 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-41.26924 -38.58955 -37.14480 -34.86026 -33.06016 -32.42259 -30.08464 -29.84697
-26.98118 -25.13848 -24.52240 -22.81645 -21.65011 -18.68033 -18.62695 -17.65414
-17.55720 -16.49523 -16.14170 -15.77942 -15.43472 -15.14752 -14.93998 -14.49795
-14.20860 -13.97818 -13.68372 -13.27224 -13.23520 -13.08338 -12.75574 -12.61796
-12.47786 -12.06145 -11.90305 -11.83943 -11.21397 -11.02654 -10.66617 -10.32121
-10.20125 -8.43717 -7.97607 -6.39964 0.41356 0.59226 1.36980 1.38824
1.46722 2.30303 2.48744 2.96684 3.04960 3.50984 3.72533 3.82540
4.06686 4.13828 4.35347 4.37889 4.44581 4.58205 4.67254 4.81578
4.88962 4.90008 5.02426 5.06736 5.14621 5.25689 5.28989 5.44377
5.63033 5.79568 6.02217 6.33016 6.67525 6.74549 6.76625 7.24663
7.31757 8.80929
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.026620 B = 0.006545 C = 0.005782
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1051.571274 B = 4276.834910 C = 4841.576674
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C 0.171 3.829
3 H 0.130 0.870
4 O -0.573 6.573
5 C -0.007 4.007
6 C -0.102 4.102
7 C -0.173 4.173
8 C 0.173 3.827
9 N -0.618 5.618
10 C 0.094 3.906
11 C 0.263 3.737
12 C -0.545 4.545
13 H 0.051 0.949
14 C 0.016 3.984
15 N -0.924 5.924
16 Si 0.960 3.040
17 H -0.267 1.267
18 H -0.279 1.279
19 H -0.275 1.275
20 C 0.005 3.995
21 N -0.452 5.452
22 H 0.049 0.951
23 H 0.078 0.922
24 H 0.063 0.937
25 H 0.384 0.616
26 H 0.167 0.833
27 H 0.156 0.844
28 H 0.058 0.942
29 H 0.061 0.939
30 H 0.082 0.918
31 H 0.017 0.983
32 H 0.013 0.987
33 H 0.268 0.732
34 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.423 13.253 5.726 14.639
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C 0.112 3.888
3 H 0.148 0.852
4 O -0.379 6.379
5 C -0.148 4.148
6 C -0.122 4.122
7 C -0.203 4.203
8 C 0.064 3.936
9 N -0.325 5.325
10 C -0.049 4.049
11 C 0.142 3.858
12 C -0.584 4.584
13 H 0.069 0.931
14 C -0.184 4.184
15 N -0.564 5.564
16 Si 0.785 3.215
17 H -0.192 1.192
18 H -0.204 1.204
19 H -0.201 1.201
20 C -0.158 4.158
21 N -0.162 5.162
22 H 0.069 0.931
23 H 0.097 0.903
24 H 0.082 0.918
25 H 0.233 0.767
26 H 0.185 0.815
27 H 0.174 0.826
28 H 0.076 0.924
29 H 0.080 0.920
30 H 0.100 0.900
31 H 0.035 0.965
32 H 0.031 0.969
33 H 0.077 0.923
34 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges 2.183 13.110 6.208 14.669
hybrid contribution -0.545 -0.970 -1.548 1.906
sum 1.638 12.140 4.660 13.107
Atomic orbital electron populations
1.22360 0.95252 1.02534 1.02804 1.20723 0.93500 0.95195 0.79368
0.85218 1.86456 1.77825 1.30218 1.43371 1.22058 1.00205 0.92215
1.00315 1.22008 0.95551 1.01540 0.93131 1.21367 1.05294 0.92822
1.00843 1.19166 0.93470 0.92709 0.88204 1.46988 1.47503 1.15350
1.22639 1.21709 0.91881 0.98678 0.92624 1.18866 0.93510 0.78126
0.95330 1.21716 1.10420 0.92551 1.33698 0.93113 1.25746 1.00686
0.94880 0.97120 1.70019 1.41552 0.98116 1.46677 0.85583 0.79382
0.77353 0.79226 1.19211 1.20416 1.20090 1.22152 1.00308 1.00615
0.92766 1.67104 1.22149 1.08977 1.17963 0.93138 0.90295 0.91762
0.76727 0.81529 0.82613 0.92405 0.92014 0.89956 0.96512 0.96920
0.92295 0.85317
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.95 9.39 71.98 0.68 -3.27 16
2 C 0.17 4.20 3.91 29.85 0.12 4.32 16
3 H 0.13 2.45 7.86 -2.39 -0.02 2.43 16
4 O -0.57 -15.28 13.33 -148.98 -1.99 -17.27 16
5 C -0.01 -0.22 5.78 42.57 0.25 0.02 16
6 C -0.10 -2.78 9.70 22.34 0.22 -2.56 16
7 C -0.17 -5.29 9.31 22.59 0.21 -5.08 16
8 C 0.17 6.81 6.57 38.30 0.25 7.06 16
9 N -0.62 -25.60 2.99 -726.14 -2.17 -27.77 16
10 C 0.09 2.97 10.22 127.77 1.31 4.28 16
11 C 0.26 13.32 4.93 85.63 0.42 13.74 16
12 C -0.55 -29.80 9.39 25.60 0.24 -29.56 16
13 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16
14 C 0.02 0.85 5.46 84.65 0.46 1.32 16
15 N -0.92 -53.43 13.29 21.45 0.28 -53.14 16
16 Si 0.96 43.46 29.54 68.60 2.03 45.49 16
17 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16
18 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16
19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16
20 C 0.00 0.21 10.38 84.85 0.88 1.09 16
21 N -0.45 -17.20 9.84 -183.33 -1.80 -19.01 16
22 H 0.05 1.34 7.94 -2.39 -0.02 1.32 16
23 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16
24 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16
25 H 0.38 9.54 9.02 -74.05 -0.67 8.87 16
26 H 0.17 3.05 7.94 -2.91 -0.02 3.03 16
27 H 0.16 3.77 6.27 -2.91 -0.02 3.75 16
28 H 0.06 1.60 8.14 -2.38 -0.02 1.59 16
29 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16
30 H 0.08 2.12 6.24 -2.38 -0.01 2.11 16
31 H 0.02 0.89 8.07 -2.39 -0.02 0.88 16
32 H 0.01 0.70 6.22 -2.39 -0.01 0.69 16
33 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16
34 H 0.13 6.28 6.16 -2.91 -0.02 6.26 16
Total: -1.00 -63.85 289.68 1.81 -62.04
By element:
Atomic # 1 Polarization: 17.89 SS G_CDS: 0.44 Total: 18.32 kcal
Atomic # 6 Polarization: -13.68 SS G_CDS: 5.03 Total: -8.65 kcal
Atomic # 7 Polarization: -96.23 SS G_CDS: -3.69 Total: -99.93 kcal
Atomic # 8 Polarization: -15.28 SS G_CDS: -1.99 Total: -17.27 kcal
Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal
Total: -63.85 1.81 -62.04 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000149522167.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.068 kcal
(2) G-P(sol) polarization free energy of solvation -63.850 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.783 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.038 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.970 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds