Wall clock time and date at job start Mon Mar 30 2020 03:43:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09004 * 109.47182 * 2 1
4 4 C 1.50697 * 109.47618 * 239.99682 * 2 1 3
5 5 H 1.07996 * 120.00416 * 267.34790 * 4 2 1
6 6 C 1.37879 * 119.99834 * 87.34432 * 4 2 1
7 7 N 1.31520 * 119.99999 * 353.64126 * 6 4 2
8 8 Si 1.86796 * 120.00229 * 173.64326 * 6 4 2
9 9 H 1.48506 * 109.47042 * 359.97438 * 8 6 4
10 10 H 1.48500 * 109.47280 * 119.99444 * 8 6 4
11 11 H 1.48494 * 109.47186 * 240.00069 * 8 6 4
12 12 N 1.46504 * 109.47211 * 119.99702 * 2 1 3
13 13 C 1.46498 * 119.99830 * 60.00053 * 12 2 1
14 14 C 1.34777 * 120.00352 * 240.00083 * 12 2 1
15 15 O 1.21285 * 119.99797 * 0.02562 * 14 12 2
16 16 C 1.50697 * 120.00399 * 179.97438 * 14 12 2
17 17 C 1.47198 * 112.84838 * 50.33470 * 16 14 12
18 18 N 5.02599 * 125.10768 * 137.59055 * 2 1 3
19 19 C 1.53780 * 113.61543 * 279.14365 * 16 14 12
20 20 C 1.53956 * 87.01832 * 220.04534 * 19 16 14
21 21 C 1.53780 * 113.61651 * 181.53198 * 16 14 12
22 22 H 1.09000 * 109.47118 * 174.35743 * 1 2 3
23 23 H 1.08999 * 109.47416 * 294.36046 * 1 2 3
24 24 H 1.09000 * 109.47056 * 54.36083 * 1 2 3
25 25 H 0.96997 * 119.99544 * 1.89541 * 7 6 4
26 26 H 1.09006 * 109.46910 * 90.00081 * 13 12 2
27 27 H 1.09000 * 109.47269 * 210.00062 * 13 12 2
28 28 H 1.09004 * 109.47381 * 330.00122 * 13 12 2
29 29 H 1.09004 * 113.61452 * 334.55761 * 19 16 14
30 30 H 1.08997 * 113.62164 * 105.46521 * 19 16 14
31 31 H 1.09000 * 113.53806 * 270.81062 * 20 19 16
32 32 H 1.09003 * 113.74284 * 139.94256 * 20 19 16
33 33 H 1.09002 * 113.61086 * 254.52848 * 21 16 14
34 34 H 1.09002 * 113.61306 * 25.35045 * 21 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7104 -1.2304
5 1 2.2532 -1.7669 -1.1916
6 6 2.2101 -0.0117 -2.4056
7 7 1.8244 1.2429 -2.4895
8 14 2.9985 -0.8469 -3.8788
9 1 3.3408 -2.2488 -3.5284
10 1 2.0477 -0.8393 -5.0195
11 1 4.2341 -0.1164 -4.2593
12 7 2.0183 -0.6906 1.1962
13 6 1.6644 -2.0931 1.4281
14 6 2.7932 -0.0356 2.0834
15 8 3.0858 1.1257 1.8917
16 6 3.2950 -0.7457 3.3142
17 6 3.9297 -2.0384 3.0093
18 7 4.4205 -3.0358 2.7730
19 6 2.2587 -0.8205 4.4479
20 6 3.4195 -0.5377 5.4189
21 6 4.1336 0.1486 4.2425
22 1 -0.3633 -1.0227 -0.1010
23 1 -0.3634 0.4239 0.9361
24 1 -0.3633 0.5988 -0.8352
25 1 1.4402 1.6848 -1.7162
26 1 2.4158 -2.7376 0.9718
27 1 1.6237 -2.2851 2.5003
28 1 0.6904 -2.3002 0.9847
29 1 1.5150 -0.0243 4.4129
30 1 1.8164 -1.8091 4.5708
31 1 3.9228 -1.4386 5.7698
32 1 3.1582 0.1438 6.2286
33 1 5.2029 -0.0590 4.1998
34 1 3.9045 1.2102 4.1501
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000167200949.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:43:59
Heat of formation + Delta-G solvation = 12.282706 kcal
Electronic energy + Delta-G solvation = -17185.710261 eV
Core-core repulsion = 14505.644578 eV
Total energy + Delta-G solvation = -2680.065683 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.63193 -37.79235 -36.01683 -35.31239 -33.03340 -29.80008 -27.31445 -26.30104
-25.88298 -24.83792 -21.77103 -21.13803 -19.39744 -17.40209 -16.92796 -16.10019
-15.70014 -14.88908 -14.61041 -13.92145 -13.78562 -13.56116 -13.05602 -12.92643
-12.64887 -12.60235 -12.31410 -11.87337 -11.74439 -11.60479 -11.27346 -11.16968
-11.08314 -10.93105 -10.75826 -10.55385 -10.21190 -10.17199 -9.10518 -8.89578
-8.47896 -7.68305 -6.46831 -4.20073 2.56174 2.70266 3.11295 3.39784
3.43995 3.56992 3.71028 3.83468 4.34666 4.45736 4.47989 4.64015
4.82968 5.17357 5.32048 5.44302 5.56670 5.63853 5.69838 5.79754
5.87658 5.88818 6.15168 6.18260 6.38289 6.42396 6.64139 7.00552
7.13963 7.45943 7.53605 7.87439 8.20355 8.38111 8.69534 8.80770
9.52307 10.91792
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.032079 B = 0.007679 C = 0.007231
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 872.622912 B = 3645.420347 C = 3871.421037
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.239 3.761
3 H 0.068 0.932
4 C -0.607 4.607
5 H 0.054 0.946
6 C 0.027 3.973
7 N -0.902 5.902
8 Si 1.074 2.926
9 H -0.290 1.290
10 H -0.286 1.286
11 H -0.285 1.285
12 N -0.579 5.579
13 C 0.081 3.919
14 C 0.525 3.475
15 O -0.535 6.535
16 C -0.024 4.024
17 C 0.236 3.764
18 N -0.418 5.418
19 C -0.108 4.108
20 C -0.142 4.142
21 C -0.100 4.100
22 H 0.043 0.957
23 H 0.023 0.977
24 H 0.059 0.941
25 H 0.273 0.727
26 H 0.050 0.950
27 H 0.053 0.947
28 H 0.076 0.924
29 H 0.105 0.895
30 H 0.081 0.919
31 H 0.082 0.918
32 H 0.082 0.918
33 H 0.078 0.922
34 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.765 -3.832 13.979 14.515
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C 0.139 3.861
3 H 0.086 0.914
4 C -0.646 4.646
5 H 0.072 0.928
6 C -0.179 4.179
7 N -0.537 5.537
8 Si 0.902 3.098
9 H -0.216 1.216
10 H -0.212 1.212
11 H -0.211 1.211
12 N -0.309 5.309
13 C -0.063 4.063
14 C 0.309 3.691
15 O -0.413 6.413
16 C -0.031 4.031
17 C -0.082 4.082
18 N -0.093 5.093
19 C -0.147 4.147
20 C -0.179 4.179
21 C -0.139 4.139
22 H 0.062 0.938
23 H 0.042 0.958
24 H 0.078 0.922
25 H 0.084 0.916
26 H 0.068 0.932
27 H 0.072 0.928
28 H 0.094 0.906
29 H 0.124 0.876
30 H 0.100 0.900
31 H 0.101 0.899
32 H 0.101 0.899
33 H 0.096 0.904
34 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges 0.547 -4.498 11.884 12.718
hybrid contribution -0.641 -0.163 1.477 1.619
sum -0.093 -4.661 13.361 14.151
Atomic orbital electron populations
1.22178 0.98773 1.00368 0.99051 1.19158 0.90273 0.95178 0.81525
0.91406 1.22115 1.49381 0.97155 0.95936 0.92792 1.25815 0.95018
0.95926 1.01171 1.70746 1.37963 1.11791 1.33167 0.83477 0.76636
0.74748 0.74941 1.21567 1.21192 1.21132 1.48329 1.48456 1.11368
1.22775 1.21703 1.01789 0.83379 0.99392 1.19547 0.79685 0.86896
0.83010 1.90679 1.58425 1.16611 1.75571 1.19540 0.99401 0.87846
0.96361 1.27810 0.93457 0.93454 0.93452 1.81227 1.08950 1.11362
1.07792 1.22992 0.96151 1.03848 0.91696 1.22970 0.96687 1.01183
0.97099 1.22895 0.99137 1.00180 0.91711 0.93829 0.95804 0.92244
0.91581 0.93158 0.92819 0.90571 0.87642 0.90013 0.89903 0.89935
0.90364 0.86743
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.17 8.98 37.15 0.33 -2.83 16
2 C 0.24 5.91 2.28 -69.08 -0.16 5.75 16
3 H 0.07 1.92 5.65 -51.93 -0.29 1.62 16
4 C -0.61 -16.65 8.29 -34.44 -0.29 -16.94 16
5 H 0.05 1.49 7.36 -52.49 -0.39 1.10 16
6 C 0.03 0.76 5.45 -17.82 -0.10 0.66 16
7 N -0.90 -26.80 13.62 55.43 0.75 -26.05 16
8 Si 1.07 25.36 29.91 -169.99 -5.08 20.28 16
9 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16
10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16
11 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16
12 N -0.58 -12.20 2.75 -175.26 -0.48 -12.68 16
13 C 0.08 1.43 8.12 59.85 0.49 1.92 16
14 C 0.53 10.46 6.81 -10.99 -0.07 10.39 16
15 O -0.54 -12.46 15.24 5.55 0.08 -12.38 16
16 C -0.02 -0.36 0.66 -157.64 -0.10 -0.46 16
17 C 0.24 3.78 11.22 -20.75 -0.23 3.55 16
18 N -0.42 -7.32 18.49 42.17 0.78 -6.54 16
19 C -0.11 -1.14 6.43 -25.83 -0.17 -1.31 16
20 C -0.14 -1.28 7.80 -25.83 -0.20 -1.48 16
21 C -0.10 -1.21 6.97 -25.92 -0.18 -1.39 16
22 H 0.04 0.89 6.91 -51.93 -0.36 0.53 16
23 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16
24 H 0.06 1.37 7.76 -51.93 -0.40 0.97 16
25 H 0.27 8.08 6.35 -40.82 -0.26 7.82 16
26 H 0.05 0.96 7.73 -51.93 -0.40 0.56 16
27 H 0.05 0.76 5.05 -51.93 -0.26 0.50 16
28 H 0.08 1.29 6.55 -51.93 -0.34 0.95 16
29 H 0.11 1.07 8.09 -51.93 -0.42 0.65 16
30 H 0.08 0.76 7.55 -51.93 -0.39 0.37 16
31 H 0.08 0.70 8.13 -51.93 -0.42 0.28 16
32 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16
33 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16
34 H 0.11 1.43 7.45 -51.93 -0.39 1.04 16
LS Contribution 283.25 15.07 4.27 4.27
Total: -1.00 -32.04 283.25 -4.74 -36.78
By element:
Atomic # 1 Polarization: 2.85 SS G_CDS: -4.39 Total: -1.54 kcal
Atomic # 6 Polarization: -1.46 SS G_CDS: -0.68 Total: -2.14 kcal
Atomic # 7 Polarization: -46.32 SS G_CDS: 1.05 Total: -45.27 kcal
Atomic # 8 Polarization: -12.46 SS G_CDS: 0.08 Total: -12.38 kcal
Atomic # 14 Polarization: 25.36 SS G_CDS: -5.08 Total: 20.28 kcal
Total LS contribution 4.27 Total: 4.27 kcal
Total: -32.04 -4.74 -36.78 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000167200949.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.064 kcal
(2) G-P(sol) polarization free energy of solvation -32.037 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.027 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.744 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.781 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.283 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds