Wall clock time and date at job start Mon Mar 30 2020 03:43:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09004 * 109.47182 * 2 1
4 4 C 1.50697 * 109.47618 * 239.99682 * 2 1 3
5 5 H 1.07996 * 120.00416 * 267.34790 * 4 2 1
6 6 C 1.37879 * 119.99834 * 87.34432 * 4 2 1
7 7 N 1.31520 * 119.99999 * 353.64126 * 6 4 2
8 8 Si 1.86796 * 120.00229 * 173.64326 * 6 4 2
9 9 H 1.48506 * 109.47042 * 359.97438 * 8 6 4
10 10 H 1.48500 * 109.47280 * 119.99444 * 8 6 4
11 11 H 1.48494 * 109.47186 * 240.00069 * 8 6 4
12 12 N 1.46504 * 109.47211 * 119.99702 * 2 1 3
13 13 C 1.46498 * 119.99830 * 60.00053 * 12 2 1
14 14 C 1.34777 * 120.00352 * 240.00083 * 12 2 1
15 15 O 1.21285 * 119.99797 * 0.02562 * 14 12 2
16 16 C 1.50697 * 120.00399 * 179.97438 * 14 12 2
17 17 C 1.47198 * 112.84838 * 50.33470 * 16 14 12
18 18 N 5.02599 * 125.10768 * 137.59055 * 2 1 3
19 19 C 1.53780 * 113.61543 * 279.14365 * 16 14 12
20 20 C 1.53956 * 87.01832 * 220.04534 * 19 16 14
21 21 C 1.53780 * 113.61651 * 181.53198 * 16 14 12
22 22 H 1.09000 * 109.47118 * 174.35743 * 1 2 3
23 23 H 1.08999 * 109.47416 * 294.36046 * 1 2 3
24 24 H 1.09000 * 109.47056 * 54.36083 * 1 2 3
25 25 H 0.96997 * 119.99544 * 1.89541 * 7 6 4
26 26 H 1.09006 * 109.46910 * 90.00081 * 13 12 2
27 27 H 1.09000 * 109.47269 * 210.00062 * 13 12 2
28 28 H 1.09004 * 109.47381 * 330.00122 * 13 12 2
29 29 H 1.09004 * 113.61452 * 334.55761 * 19 16 14
30 30 H 1.08997 * 113.62164 * 105.46521 * 19 16 14
31 31 H 1.09000 * 113.53806 * 270.81062 * 20 19 16
32 32 H 1.09003 * 113.74284 * 139.94256 * 20 19 16
33 33 H 1.09002 * 113.61086 * 254.52848 * 21 16 14
34 34 H 1.09002 * 113.61306 * 25.35045 * 21 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7104 -1.2304
5 1 2.2532 -1.7669 -1.1916
6 6 2.2101 -0.0117 -2.4056
7 7 1.8244 1.2429 -2.4895
8 14 2.9985 -0.8469 -3.8788
9 1 3.3408 -2.2488 -3.5284
10 1 2.0477 -0.8393 -5.0195
11 1 4.2341 -0.1164 -4.2593
12 7 2.0183 -0.6906 1.1962
13 6 1.6644 -2.0931 1.4281
14 6 2.7932 -0.0356 2.0834
15 8 3.0858 1.1257 1.8917
16 6 3.2950 -0.7457 3.3142
17 6 3.9297 -2.0384 3.0093
18 7 4.4205 -3.0358 2.7730
19 6 2.2587 -0.8205 4.4479
20 6 3.4195 -0.5377 5.4189
21 6 4.1336 0.1486 4.2425
22 1 -0.3633 -1.0227 -0.1010
23 1 -0.3634 0.4239 0.9361
24 1 -0.3633 0.5988 -0.8352
25 1 1.4402 1.6848 -1.7162
26 1 2.4158 -2.7376 0.9718
27 1 1.6237 -2.2851 2.5003
28 1 0.6904 -2.3002 0.9847
29 1 1.5150 -0.0243 4.4129
30 1 1.8164 -1.8091 4.5708
31 1 3.9228 -1.4386 5.7698
32 1 3.1582 0.1438 6.2286
33 1 5.2029 -0.0590 4.1998
34 1 3.9045 1.2102 4.1501
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000167200949.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:43:59
Heat of formation + Delta-G solvation = -8.250510 kcal
Electronic energy + Delta-G solvation = -17186.600648 eV
Core-core repulsion = 14505.644578 eV
Total energy + Delta-G solvation = -2680.956070 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-41.94034 -39.20547 -37.56126 -36.80332 -34.99510 -31.63074 -28.54080 -27.80479
-26.95594 -26.76512 -23.50542 -22.12367 -21.03986 -18.90459 -18.83264 -17.35978
-17.22852 -16.21133 -15.87656 -15.70432 -15.36217 -15.09866 -14.83704 -14.25418
-14.01395 -13.88770 -13.61275 -13.40353 -13.32633 -13.00507 -12.90359 -12.78246
-12.64270 -12.32138 -12.11345 -12.00184 -11.73570 -11.47673 -10.91842 -10.66288
-10.60127 -9.47182 -8.69132 -6.43063 1.21130 1.43207 1.47681 1.56259
1.66376 1.71795 2.17335 2.50662 2.60390 3.14060 3.35504 3.42636
3.55339 3.77900 4.13701 4.34194 4.41201 4.50415 4.66750 4.69351
4.71953 4.76632 4.80307 4.90988 4.98253 5.10890 5.13540 5.29493
5.37993 5.65206 5.84377 6.14087 6.26337 6.45517 6.62185 7.13645
7.37893 8.68671
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.032079 B = 0.007679 C = 0.007231
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 872.622912 B = 3645.420347 C = 3871.421037
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C 0.239 3.761
3 H 0.026 0.974
4 C -0.614 4.614
5 H 0.049 0.951
6 C -0.024 4.024
7 N -0.928 5.928
8 Si 1.116 2.884
9 H -0.276 1.276
10 H -0.272 1.272
11 H -0.285 1.285
12 N -0.589 5.589
13 C 0.083 3.917
14 C 0.518 3.482
15 O -0.578 6.578
16 C -0.031 4.031
17 C 0.250 3.750
18 N -0.444 5.444
19 C -0.100 4.100
20 C -0.119 4.119
21 C -0.105 4.105
22 H 0.058 0.942
23 H 0.046 0.954
24 H 0.038 0.962
25 H 0.260 0.740
26 H 0.033 0.967
27 H 0.091 0.909
28 H 0.083 0.917
29 H 0.112 0.888
30 H 0.102 0.898
31 H 0.095 0.905
32 H 0.110 0.890
33 H 0.080 0.920
34 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.094 -5.299 15.876 16.773
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C 0.137 3.863
3 H 0.044 0.956
4 C -0.652 4.652
5 H 0.067 0.933
6 C -0.224 4.224
7 N -0.565 5.565
8 Si 0.938 3.062
9 H -0.201 1.201
10 H -0.197 1.197
11 H -0.211 1.211
12 N -0.319 5.319
13 C -0.060 4.060
14 C 0.304 3.696
15 O -0.458 6.458
16 C -0.038 4.038
17 C -0.068 4.068
18 N -0.120 5.120
19 C -0.139 4.139
20 C -0.156 4.156
21 C -0.144 4.144
22 H 0.077 0.923
23 H 0.065 0.935
24 H 0.057 0.943
25 H 0.071 0.929
26 H 0.052 0.948
27 H 0.109 0.891
28 H 0.102 0.898
29 H 0.130 0.870
30 H 0.121 0.879
31 H 0.113 0.887
32 H 0.128 0.872
33 H 0.099 0.901
34 H 0.125 0.875
Dipole moment (debyes) X Y Z Total
from point charges 0.209 -5.999 13.815 15.062
hybrid contribution -0.513 0.314 0.930 1.108
sum -0.304 -5.684 14.745 15.806
Atomic orbital electron populations
1.21957 0.96470 1.01084 0.99424 1.18861 0.91958 0.93069 0.82438
0.95637 1.22411 1.48741 0.96991 0.97057 0.93262 1.27142 0.95115
0.95918 1.04217 1.70853 1.39959 1.12840 1.32814 0.82939 0.76085
0.74467 0.72693 1.20125 1.19711 1.21073 1.48271 1.48930 1.12670
1.21984 1.21836 1.01445 0.80871 1.01808 1.20409 0.78540 0.86667
0.83980 1.90655 1.59602 1.18756 1.76772 1.19753 1.02087 0.87315
0.94610 1.27965 0.92776 0.93299 0.92720 1.81249 1.09964 1.12447
1.08347 1.23137 0.96015 1.05410 0.89301 1.22919 0.94678 1.01687
0.96355 1.23004 0.99316 0.99544 0.92493 0.92300 0.93484 0.94284
0.92905 0.94841 0.89067 0.89829 0.86978 0.87908 0.88679 0.87162
0.90131 0.87532
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.68 8.98 71.98 0.65 -5.04 16
2 C 0.24 12.03 2.28 44.24 0.10 12.13 16
3 H 0.03 1.51 5.65 -2.39 -0.01 1.50 16
4 C -0.61 -34.10 8.29 25.60 0.21 -33.89 16
5 H 0.05 2.72 7.36 -2.91 -0.02 2.70 16
6 C -0.02 -1.37 5.45 84.65 0.46 -0.91 16
7 N -0.93 -56.77 13.62 21.45 0.29 -56.48 16
8 Si 1.12 51.25 29.91 68.60 2.05 53.30 16
9 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16
10 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16
11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16
12 N -0.59 -24.60 2.75 -826.79 -2.28 -26.88 16
13 C 0.08 2.79 8.12 127.77 1.04 3.82 16
14 C 0.52 20.51 6.81 87.66 0.60 21.11 16
15 O -0.58 -27.59 15.24 -3.05 -0.05 -27.64 16
16 C -0.03 -0.84 0.66 -54.21 -0.04 -0.88 16
17 C 0.25 7.52 11.22 89.44 1.00 8.53 16
18 N -0.44 -14.86 18.49 20.01 0.37 -14.49 16
19 C -0.10 -1.74 6.43 31.18 0.20 -1.54 16
20 C -0.12 -1.65 7.80 31.18 0.24 -1.40 16
21 C -0.10 -2.30 6.97 31.12 0.22 -2.08 16
22 H 0.06 2.34 6.91 -2.39 -0.02 2.32 16
23 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16
24 H 0.04 1.82 7.76 -2.39 -0.02 1.81 16
25 H 0.26 16.15 6.35 -92.71 -0.59 15.57 16
26 H 0.03 1.23 7.73 -2.38 -0.02 1.21 16
27 H 0.09 2.33 5.05 -2.39 -0.01 2.32 16
28 H 0.08 2.66 6.55 -2.38 -0.02 2.64 16
29 H 0.11 1.87 8.09 -2.38 -0.02 1.86 16
30 H 0.10 1.41 7.55 -2.39 -0.02 1.39 16
31 H 0.09 1.16 8.13 -2.39 -0.02 1.14 16
32 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16
33 H 0.08 1.71 8.08 -2.39 -0.02 1.69 16
34 H 0.11 2.55 7.45 -2.39 -0.02 2.53 16
Total: -1.00 -71.87 283.25 6.36 -65.51
By element:
Atomic # 1 Polarization: 5.55 SS G_CDS: 1.28 Total: 6.83 kcal
Atomic # 6 Polarization: -4.84 SS G_CDS: 4.68 Total: -0.16 kcal
Atomic # 7 Polarization: -96.23 SS G_CDS: -1.61 Total: -97.85 kcal
Atomic # 8 Polarization: -27.59 SS G_CDS: -0.05 Total: -27.64 kcal
Atomic # 14 Polarization: 51.25 SS G_CDS: 2.05 Total: 53.30 kcal
Total: -71.87 6.36 -65.51 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000167200949.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.260 kcal
(2) G-P(sol) polarization free energy of solvation -71.869 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.609 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.358 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.511 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.251 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds