Wall clock time and date at job start Mon Mar 30 2020 03:06:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.50708 * 109.46927 * 2 1
4 4 N 1.30371 * 126.00388 * 270.35449 * 3 2 1
5 5 N 1.39912 * 109.00122 * 180.14233 * 4 3 2
6 6 C 1.46506 * 125.70489 * 179.81241 * 5 4 3
7 7 C 1.34126 * 108.59319 * 359.54552 * 5 4 3
8 8 C 1.38455 * 107.36994 * 0.26658 * 7 5 4
9 9 C 1.46672 * 126.47777 * 180.02562 * 8 7 5
10 10 O 1.21313 * 119.99895 * 179.97438 * 9 8 7
11 11 C 1.50702 * 119.99702 * 359.97438 * 9 8 7
12 12 H 1.08994 * 109.47503 * 34.99709 * 11 9 8
13 13 C 1.52998 * 109.46565 * 274.99810 * 11 9 8
14 14 C 1.50699 * 109.46780 * 155.00018 * 11 9 8
15 15 H 1.07998 * 120.00346 * 359.97438 * 14 11 9
16 16 C 1.37878 * 119.99533 * 179.97438 * 14 11 9
17 17 N 1.31508 * 120.00388 * 359.97438 * 16 14 11
18 18 Si 1.86805 * 119.99719 * 179.97438 * 16 14 11
19 19 H 1.48499 * 109.46912 * 90.00080 * 18 16 14
20 20 H 1.48494 * 109.47028 * 209.99986 * 18 16 14
21 21 H 1.48500 * 109.47088 * 330.00029 * 18 16 14
22 22 H 1.09001 * 109.47331 * 299.99887 * 1 2 3
23 23 H 1.08996 * 109.46976 * 60.00223 * 1 2 3
24 24 H 1.09002 * 109.46585 * 179.97438 * 1 2 3
25 25 H 1.09001 * 109.47331 * 240.00113 * 2 1 3
26 26 H 1.09005 * 109.47437 * 119.99435 * 2 1 3
27 27 H 1.09001 * 109.47060 * 269.69420 * 6 5 4
28 28 H 1.09004 * 109.47073 * 29.68909 * 6 5 4
29 29 H 1.09000 * 109.47212 * 149.68991 * 6 5 4
30 30 H 1.07997 * 126.31817 * 180.24385 * 7 5 4
31 31 H 1.09008 * 109.47335 * 300.00003 * 13 11 9
32 32 H 1.08997 * 109.47689 * 60.00439 * 13 11 9
33 33 H 1.09008 * 109.46758 * 180.02562 * 13 11 9
34 34 H 0.96998 * 119.99946 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 7 2.2816 2.1456 -1.0547
5 7 2.7330 3.4052 -0.6456
6 6 3.1209 4.5042 -1.5332
7 6 2.7456 3.4402 0.6952
8 6 2.3097 2.2055 1.1451
9 6 2.1624 1.7893 2.5438
10 8 1.7677 0.6726 2.8060
11 6 2.5016 2.7490 3.6551
12 1 2.2346 3.7621 3.3545
13 6 4.0021 2.6822 3.9463
14 6 1.7319 2.3737 4.8952
15 1 1.0637 1.5254 4.8800
16 6 1.8808 3.1134 6.0492
17 7 2.6949 4.1461 6.0679
18 14 0.9262 2.6486 7.5862
19 1 1.7236 1.6904 8.3931
20 1 0.6571 3.8683 8.3894
21 1 -0.3607 2.0178 7.1977
22 1 -0.3634 0.5138 0.8900
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3632 -1.0277 -0.0005
25 1 1.8934 -0.5138 -0.8900
26 1 1.8934 -0.5138 0.8901
27 1 4.1862 4.4345 -1.7536
28 1 2.5529 4.4395 -2.4613
29 1 2.9124 5.4563 -1.0453
30 1 3.0417 4.2770 1.3104
31 1 4.2691 1.6690 4.2470
32 1 4.5588 2.9536 3.0494
33 1 4.2473 3.3761 4.7505
34 1 2.7993 4.6667 6.8796
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000167909468.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:06:19
Heat of formation + Delta-G solvation = 22.853569 kcal
Electronic energy + Delta-G solvation = -16749.447699 eV
Core-core repulsion = 14069.840403 eV
Total energy + Delta-G solvation = -2679.607296 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-41.00759 -37.86663 -34.47348 -33.63453 -31.65081 -30.78365 -29.46149 -26.72522
-25.12880 -23.92224 -22.57691 -21.31460 -19.29817 -18.37223 -16.55936 -15.95285
-15.43472 -14.99454 -14.46894 -14.31418 -13.83088 -13.47236 -13.33330 -12.86224
-12.70668 -12.54275 -12.21628 -11.75613 -11.44936 -11.20932 -11.01574 -10.85536
-10.64021 -10.60567 -10.44781 -10.16771 -9.99163 -9.07893 -8.92551 -8.42480
-8.18975 -8.14769 -6.00337 -4.03935 1.87115 2.50580 2.60256 3.34816
3.40573 3.46733 4.02794 4.46481 4.54449 4.99728 5.06275 5.09003
5.31982 5.32173 5.40424 5.45260 5.68413 5.77967 5.85470 6.05606
6.19431 6.44909 6.54050 6.65453 6.78888 6.89367 6.99340 7.06854
7.12159 7.56865 7.81387 7.92091 8.05774 8.33088 8.89105 9.02347
9.60671 11.06660
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.028050 B = 0.007333 C = 0.006222
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 997.976276 B = 3817.365470 C = 4499.411101
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.045 4.045
3 C 0.123 3.877
4 N -0.316 5.316
5 N -0.372 5.372
6 C 0.101 3.899
7 C 0.111 3.889
8 C -0.303 4.303
9 C 0.430 3.570
10 O -0.473 6.473
11 C 0.009 3.991
12 H 0.046 0.954
13 C -0.127 4.127
14 C -0.501 4.501
15 H 0.068 0.932
16 C 0.059 3.941
17 N -0.896 5.896
18 Si 0.896 3.104
19 H -0.280 1.280
20 H -0.287 1.287
21 H -0.273 1.273
22 H 0.062 0.938
23 H 0.048 0.952
24 H 0.059 0.941
25 H 0.069 0.931
26 H 0.099 0.901
27 H 0.075 0.925
28 H 0.087 0.913
29 H 0.089 0.911
30 H 0.187 0.813
31 H 0.031 0.969
32 H 0.011 0.989
33 H 0.092 0.908
34 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.029 0.947 -12.769 12.845
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.085 4.085
3 C -0.044 4.044
4 N -0.137 5.137
5 N -0.151 5.151
6 C -0.041 4.041
7 C -0.039 4.039
8 C -0.316 4.316
9 C 0.308 3.692
10 O -0.348 6.348
11 C -0.010 4.010
12 H 0.064 0.936
13 C -0.185 4.185
14 C -0.540 4.540
15 H 0.086 0.914
16 C -0.141 4.141
17 N -0.536 5.536
18 Si 0.724 3.276
19 H -0.206 1.206
20 H -0.213 1.213
21 H -0.198 1.198
22 H 0.081 0.919
23 H 0.068 0.932
24 H 0.078 0.922
25 H 0.088 0.912
26 H 0.117 0.883
27 H 0.093 0.907
28 H 0.106 0.894
29 H 0.108 0.892
30 H 0.204 0.796
31 H 0.050 0.950
32 H 0.030 0.970
33 H 0.111 0.889
34 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 0.938 0.678 -13.892 13.940
hybrid contribution -0.294 0.217 1.628 1.668
sum 0.644 0.895 -12.265 12.314
Atomic orbital electron populations
1.21612 0.94256 1.01713 1.02034 1.20062 0.96356 0.88445 1.03601
1.22607 0.95482 0.96701 0.89660 1.76974 1.22822 0.90817 1.23081
1.48252 1.50289 1.11557 1.04993 1.21883 1.01360 0.86320 0.94522
1.23371 0.96715 0.99468 0.84327 1.21502 1.17533 0.95079 0.97444
1.22347 0.71542 0.88319 0.86956 1.90326 1.36064 1.22395 1.86062
1.19087 0.94982 0.94540 0.92400 0.93646 1.21655 0.95189 1.01523
1.00152 1.21129 1.24624 1.13648 0.94558 0.91390 1.24930 0.95449
0.94895 0.98815 1.69859 1.37129 1.18432 1.28153 0.86512 0.80502
0.77765 0.82798 1.20631 1.21336 1.19803 0.91911 0.93248 0.92172
0.91192 0.88274 0.90691 0.89385 0.89249 0.79577 0.94955 0.97012
0.88929 0.93028
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.06 9.89 37.16 0.37 -1.70 16
2 C -0.05 -0.74 5.97 -27.88 -0.17 -0.91 16
3 C 0.12 2.25 6.53 -81.95 -0.53 1.72 16
4 N -0.32 -5.46 12.49 33.94 0.42 -5.03 16
5 N -0.37 -5.51 3.97 -67.51 -0.27 -5.78 16
6 C 0.10 0.91 11.44 59.85 0.68 1.60 16
7 C 0.11 1.82 10.86 -16.47 -0.18 1.64 16
8 C -0.30 -5.98 6.11 -105.15 -0.64 -6.62 16
9 C 0.43 9.96 6.23 -30.90 -0.19 9.77 16
10 O -0.47 -11.83 14.39 5.53 0.08 -11.75 16
11 C 0.01 0.22 2.26 -92.92 -0.21 0.01 16
12 H 0.05 1.13 7.45 -51.93 -0.39 0.74 16
13 C -0.13 -3.00 8.95 37.16 0.33 -2.67 16
14 C -0.50 -14.11 8.33 -34.44 -0.29 -14.40 16
15 H 0.07 1.99 7.03 -52.49 -0.37 1.63 16
16 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16
17 N -0.90 -24.97 11.32 55.43 0.63 -24.35 16
18 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16
19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16
22 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
25 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16
26 H 0.10 1.76 6.56 -51.93 -0.34 1.42 16
27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
28 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16
29 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16
30 H 0.19 2.61 7.65 -52.49 -0.40 2.21 16
31 H 0.03 0.77 8.14 -51.92 -0.42 0.34 16
32 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16
33 H 0.09 2.36 6.07 -51.92 -0.32 2.04 16
34 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16
LS Contribution 291.24 15.07 4.39 4.39
Total: -1.00 -32.19 291.24 -5.44 -37.64
By element:
Atomic # 1 Polarization: 3.00 SS G_CDS: -4.75 Total: -1.75 kcal
Atomic # 6 Polarization: -9.09 SS G_CDS: -0.92 Total: -10.01 kcal
Atomic # 7 Polarization: -35.94 SS G_CDS: 0.78 Total: -35.16 kcal
Atomic # 8 Polarization: -11.83 SS G_CDS: 0.08 Total: -11.75 kcal
Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal
Total LS contribution 4.39 Total: 4.39 kcal
Total: -32.19 -5.44 -37.64 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000167909468.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.491 kcal
(2) G-P(sol) polarization free energy of solvation -32.193 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.298 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.444 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.637 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.854 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds