Wall clock time and date at job start Mon Mar 30 2020 03:06:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.50708 * 109.46927 * 2 1
4 4 N 1.30371 * 126.00388 * 270.35449 * 3 2 1
5 5 N 1.39912 * 109.00122 * 180.14233 * 4 3 2
6 6 C 1.46506 * 125.70489 * 179.81241 * 5 4 3
7 7 C 1.34126 * 108.59319 * 359.54552 * 5 4 3
8 8 C 1.38455 * 107.36994 * 0.26658 * 7 5 4
9 9 C 1.46672 * 126.47777 * 180.02562 * 8 7 5
10 10 O 1.21313 * 119.99895 * 179.97438 * 9 8 7
11 11 C 1.50702 * 119.99702 * 359.97438 * 9 8 7
12 12 H 1.08994 * 109.47503 * 34.99709 * 11 9 8
13 13 C 1.52998 * 109.46565 * 274.99810 * 11 9 8
14 14 C 1.50699 * 109.46780 * 155.00018 * 11 9 8
15 15 H 1.07998 * 120.00346 * 359.97438 * 14 11 9
16 16 C 1.37878 * 119.99533 * 179.97438 * 14 11 9
17 17 N 1.31508 * 120.00388 * 359.97438 * 16 14 11
18 18 Si 1.86805 * 119.99719 * 179.97438 * 16 14 11
19 19 H 1.48499 * 109.46912 * 90.00080 * 18 16 14
20 20 H 1.48494 * 109.47028 * 209.99986 * 18 16 14
21 21 H 1.48500 * 109.47088 * 330.00029 * 18 16 14
22 22 H 1.09001 * 109.47331 * 299.99887 * 1 2 3
23 23 H 1.08996 * 109.46976 * 60.00223 * 1 2 3
24 24 H 1.09002 * 109.46585 * 179.97438 * 1 2 3
25 25 H 1.09001 * 109.47331 * 240.00113 * 2 1 3
26 26 H 1.09005 * 109.47437 * 119.99435 * 2 1 3
27 27 H 1.09001 * 109.47060 * 269.69420 * 6 5 4
28 28 H 1.09004 * 109.47073 * 29.68909 * 6 5 4
29 29 H 1.09000 * 109.47212 * 149.68991 * 6 5 4
30 30 H 1.07997 * 126.31817 * 180.24385 * 7 5 4
31 31 H 1.09008 * 109.47335 * 300.00003 * 13 11 9
32 32 H 1.08997 * 109.47689 * 60.00439 * 13 11 9
33 33 H 1.09008 * 109.46758 * 180.02562 * 13 11 9
34 34 H 0.96998 * 119.99946 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 7 2.2816 2.1456 -1.0547
5 7 2.7330 3.4052 -0.6456
6 6 3.1209 4.5042 -1.5332
7 6 2.7456 3.4402 0.6952
8 6 2.3097 2.2055 1.1451
9 6 2.1624 1.7893 2.5438
10 8 1.7677 0.6726 2.8060
11 6 2.5016 2.7490 3.6551
12 1 2.2346 3.7621 3.3545
13 6 4.0021 2.6822 3.9463
14 6 1.7319 2.3737 4.8952
15 1 1.0637 1.5254 4.8800
16 6 1.8808 3.1134 6.0492
17 7 2.6949 4.1461 6.0679
18 14 0.9262 2.6486 7.5862
19 1 1.7236 1.6904 8.3931
20 1 0.6571 3.8683 8.3894
21 1 -0.3607 2.0178 7.1977
22 1 -0.3634 0.5138 0.8900
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3632 -1.0277 -0.0005
25 1 1.8934 -0.5138 -0.8900
26 1 1.8934 -0.5138 0.8901
27 1 4.1862 4.4345 -1.7536
28 1 2.5529 4.4395 -2.4613
29 1 2.9124 5.4563 -1.0453
30 1 3.0417 4.2770 1.3104
31 1 4.2691 1.6690 4.2470
32 1 4.5588 2.9536 3.0494
33 1 4.2473 3.3761 4.7505
34 1 2.7993 4.6667 6.8796
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000167909468.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:06:18
Heat of formation + Delta-G solvation = 3.050742 kcal
Electronic energy + Delta-G solvation = -16750.306414 eV
Core-core repulsion = 14069.840403 eV
Total energy + Delta-G solvation = -2680.466011 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-42.32875 -39.63465 -35.90020 -35.44786 -33.03644 -32.40307 -31.00638 -27.81754
-27.20103 -25.45434 -23.99900 -22.79534 -20.72028 -19.93785 -18.28687 -17.68220
-16.84443 -16.58960 -15.99892 -15.75946 -15.18084 -15.12148 -14.86181 -14.48512
-13.96609 -13.71348 -13.49925 -13.38094 -12.96782 -12.86447 -12.62405 -12.57029
-12.39596 -12.21112 -12.12111 -11.98232 -11.70988 -10.98877 -10.50072 -10.31897
-9.96520 -9.56367 -8.11238 -6.21712 0.47888 1.06677 1.41710 1.43212
1.52153 1.54267 2.37498 2.46742 3.17522 3.37685 3.73865 3.86496
4.07748 4.25147 4.43889 4.46218 4.55387 4.62503 4.70957 4.74242
4.79394 4.94552 5.01034 5.10478 5.12828 5.21313 5.30264 5.53167
5.59904 5.76018 5.96057 6.01662 6.30479 6.60460 6.83229 7.13890
7.45501 8.93856
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.028050 B = 0.007333 C = 0.006222
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 997.976276 B = 3817.365470 C = 4499.411101
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.047 4.047
3 C 0.114 3.886
4 N -0.324 5.324
5 N -0.359 5.359
6 C 0.086 3.914
7 C 0.130 3.870
8 C -0.345 4.345
9 C 0.431 3.569
10 O -0.507 6.507
11 C 0.006 3.994
12 H 0.045 0.955
13 C -0.115 4.115
14 C -0.530 4.530
15 H 0.044 0.956
16 C 0.022 3.978
17 N -0.909 5.909
18 Si 0.950 3.050
19 H -0.277 1.277
20 H -0.274 1.274
21 H -0.277 1.277
22 H 0.032 0.968
23 H 0.059 0.941
24 H 0.082 0.918
25 H 0.092 0.908
26 H 0.078 0.922
27 H 0.096 0.904
28 H 0.100 0.900
29 H 0.118 0.882
30 H 0.212 0.788
31 H 0.016 0.984
32 H 0.045 0.955
33 H 0.074 0.926
34 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.407 2.154 -14.111 14.343
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.086 4.086
3 C -0.053 4.053
4 N -0.146 5.146
5 N -0.136 5.136
6 C -0.052 4.052
7 C -0.023 4.023
8 C -0.357 4.357
9 C 0.312 3.688
10 O -0.385 6.385
11 C -0.013 4.013
12 H 0.063 0.937
13 C -0.173 4.173
14 C -0.568 4.568
15 H 0.062 0.938
16 C -0.177 4.177
17 N -0.549 5.549
18 Si 0.776 3.224
19 H -0.203 1.203
20 H -0.199 1.199
21 H -0.202 1.202
22 H 0.052 0.948
23 H 0.078 0.922
24 H 0.100 0.900
25 H 0.111 0.889
26 H 0.096 0.904
27 H 0.114 0.886
28 H 0.118 0.882
29 H 0.137 0.863
30 H 0.228 0.772
31 H 0.035 0.965
32 H 0.063 0.937
33 H 0.092 0.908
34 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 1.331 1.912 -15.273 15.450
hybrid contribution -0.368 -0.059 1.949 1.985
sum 0.963 1.853 -13.324 13.487
Atomic orbital electron populations
1.21554 0.93435 1.02892 1.00982 1.20095 0.97059 0.87863 1.03605
1.22812 0.95569 0.97482 0.89416 1.76934 1.23127 0.91851 1.22699
1.48723 1.48018 1.11718 1.05181 1.22429 1.02861 0.85535 0.94417
1.23634 0.94673 0.98726 0.85243 1.21227 1.21278 0.97327 0.95870
1.22270 0.70711 0.87407 0.88389 1.90302 1.37940 1.23475 1.86813
1.19065 0.95294 0.94831 0.92145 0.93749 1.21479 0.94859 1.00031
1.00949 1.21304 1.25385 1.13443 0.96674 0.93802 1.25545 0.96217
0.94872 1.01079 1.69925 1.37384 1.18623 1.28921 0.85677 0.79072
0.77895 0.79748 1.20264 1.19936 1.20249 0.94832 0.92203 0.89953
0.88909 0.90384 0.88569 0.88169 0.86323 0.77163 0.96469 0.93656
0.90768 0.92640
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.88 9.89 71.98 0.71 -3.16 16
2 C -0.05 -1.53 5.97 29.85 0.18 -1.35 16
3 C 0.11 4.11 6.53 43.60 0.28 4.39 16
4 N -0.32 -10.55 12.49 -46.54 -0.58 -11.14 16
5 N -0.36 -9.55 3.97 -367.50 -1.46 -11.01 16
6 C 0.09 1.20 11.44 127.77 1.46 2.67 16
7 C 0.13 3.96 10.86 84.39 0.92 4.88 16
8 C -0.34 -13.44 6.11 -20.21 -0.12 -13.57 16
9 C 0.43 20.42 6.23 27.89 0.17 20.60 16
10 O -0.51 -26.50 14.39 -3.13 -0.05 -26.55 16
11 C 0.01 0.29 2.26 -12.29 -0.03 0.26 16
12 H 0.04 2.22 7.45 -2.39 -0.02 2.20 16
13 C -0.12 -5.44 8.95 71.98 0.64 -4.79 16
14 C -0.53 -30.58 8.33 25.60 0.21 -30.36 16
15 H 0.04 2.68 7.03 -2.91 -0.02 2.66 16
16 C 0.02 1.23 5.30 84.66 0.45 1.68 16
17 N -0.91 -50.48 11.32 21.45 0.24 -50.24 16
18 Si 0.95 44.64 29.54 68.60 2.03 46.66 16
19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16
20 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16
21 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16
22 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16
23 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16
24 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16
25 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16
26 H 0.08 2.86 6.56 -2.38 -0.02 2.84 16
27 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16
28 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16
29 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16
30 H 0.21 5.26 7.65 -2.91 -0.02 5.24 16
31 H 0.02 0.80 8.14 -2.38 -0.02 0.79 16
32 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16
33 H 0.07 3.77 6.07 -2.38 -0.01 3.76 16
34 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16
Total: -1.00 -70.39 291.24 6.15 -64.24
By element:
Atomic # 1 Polarization: 5.71 SS G_CDS: 1.08 Total: 6.80 kcal
Atomic # 6 Polarization: -23.65 SS G_CDS: 4.88 Total: -18.77 kcal
Atomic # 7 Polarization: -70.59 SS G_CDS: -1.80 Total: -72.39 kcal
Atomic # 8 Polarization: -26.50 SS G_CDS: -0.05 Total: -26.55 kcal
Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal
Total: -70.39 6.15 -64.24 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000167909468.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.288 kcal
(2) G-P(sol) polarization free energy of solvation -70.386 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.098 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.149 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.237 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.051 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds