Wall clock time and date at job start Mon Mar 30 2020 03:05:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.50703 * 109.46658 * 2 1
4 4 N 1.30368 * 126.00783 * 270.02173 * 3 2 1
5 5 N 1.39910 * 109.00742 * 179.72554 * 4 3 2
6 6 C 1.46499 * 125.70843 * 180.29084 * 5 4 3
7 7 C 1.50699 * 109.47513 * 270.16220 * 6 5 4
8 8 H 1.08000 * 120.00087 * 359.97438 * 7 6 5
9 9 C 1.37879 * 120.00132 * 179.97438 * 7 6 5
10 10 N 1.31513 * 119.99662 * 179.97438 * 9 7 6
11 11 Si 1.86797 * 119.99937 * 0.02562 * 9 7 6
12 12 H 1.48503 * 109.46754 * 89.99766 * 11 9 7
13 13 H 1.48495 * 109.47177 * 209.99524 * 11 9 7
14 14 H 1.48497 * 109.46988 * 329.99940 * 11 9 7
15 15 C 1.34125 * 108.58974 * 0.43317 * 5 4 3
16 16 C 1.50703 * 126.31635 * 179.84399 * 15 5 4
17 17 C 1.53000 * 109.46912 * 89.71309 * 16 15 5
18 18 C 1.38450 * 107.37141 * 359.58053 * 15 5 4
19 19 C 1.46667 * 126.48112 * 180.26695 * 18 15 5
20 20 O 1.21315 * 120.00604 * 179.97438 * 19 18 15
21 21 H 1.08999 * 109.46800 * 180.02562 * 1 2 3
22 22 H 1.09001 * 109.47388 * 299.99745 * 1 2 3
23 23 H 1.08999 * 109.47048 * 60.00442 * 1 2 3
24 24 H 1.08997 * 109.47078 * 239.99858 * 2 1 3
25 25 H 1.08999 * 109.47048 * 119.99558 * 2 1 3
26 26 H 1.09005 * 109.46692 * 30.15927 * 6 5 4
27 27 H 1.09001 * 109.47367 * 150.15525 * 6 5 4
28 28 H 0.97005 * 119.99850 * 180.02562 * 10 9 7
29 29 H 1.09002 * 109.47152 * 329.71080 * 16 15 5
30 30 H 1.09001 * 109.46980 * 209.71181 * 16 15 5
31 31 H 1.09001 * 109.47194 * 299.99742 * 17 16 15
32 32 H 1.08992 * 109.47399 * 59.99914 * 17 16 15
33 33 H 1.09004 * 109.46724 * 180.02562 * 17 16 15
34 34 H 1.08000 * 119.99898 * 359.97438 * 19 18 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 7 2.2873 2.1436 -1.0546
5 7 2.7274 3.4072 -0.6455
6 6 3.1079 4.5088 -1.5331
7 6 4.5796 4.4180 -1.8442
8 1 5.1724 3.6198 -1.4225
9 6 5.1694 5.3540 -2.6671
10 7 6.4538 5.2750 -2.9380
11 14 4.1442 6.7350 -3.3958
12 1 4.1577 7.9003 -2.4753
13 1 4.7130 7.1343 -4.7081
14 1 2.7469 6.2684 -3.5832
15 6 2.7456 3.4402 0.6952
16 6 3.1583 4.6080 1.5537
17 6 1.9376 5.4833 1.8450
18 6 2.3097 2.2055 1.1451
19 6 2.1629 1.7892 2.5437
20 8 1.7681 0.6724 2.8060
21 1 -0.3633 -1.0277 0.0005
22 1 -0.3634 0.5138 0.8900
23 1 -0.3633 0.5138 -0.8900
24 1 1.8934 -0.5138 -0.8900
25 1 1.8934 -0.5138 0.8900
26 1 2.5362 4.4434 -2.4589
27 1 2.8980 5.4595 -1.0429
28 1 6.8689 5.9337 -3.5167
29 1 3.9107 5.1968 1.0289
30 1 3.5740 4.2404 2.4918
31 1 1.5219 5.8509 0.9069
32 1 1.1853 4.8945 2.3698
33 1 2.2362 6.3282 2.4656
34 1 2.4063 2.4767 3.3402
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000230797091.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:05:57
Heat of formation + Delta-G solvation = 13.792051 kcal
Electronic energy + Delta-G solvation = -16756.816199 eV
Core-core repulsion = 14076.815967 eV
Total energy + Delta-G solvation = -2680.000233 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-40.92521 -38.04011 -34.87293 -33.53205 -32.83481 -31.20111 -29.07218 -27.69013
-24.27794 -23.93855 -22.94321 -21.48494 -19.21085 -18.69827 -17.26234 -16.12748
-15.62319 -14.94045 -14.51982 -14.33013 -14.05702 -13.73370 -13.58824 -13.28656
-13.03840 -12.60346 -12.39175 -12.17168 -12.03159 -11.49139 -11.24202 -11.08782
-10.96241 -10.91314 -10.68213 -10.35026 -10.13978 -9.82297 -9.14424 -8.90727
-8.56958 -7.97071 -6.38479 -4.43732 1.75784 2.66729 3.03698 3.09665
3.13776 3.22904 3.64762 4.10355 4.72858 4.82470 4.88329 5.04293
5.17673 5.37431 5.39826 5.60882 5.67433 5.72427 5.77571 5.97691
5.99135 6.13485 6.16868 6.18855 6.27664 6.32830 6.39524 6.48331
6.70960 7.09897 7.13855 7.51629 7.95480 8.14675 8.33867 8.64937
9.15250 10.73627
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.028381 B = 0.007434 C = 0.006678
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 986.323601 B = 3765.788625 C = 4191.682991
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.043 4.043
3 C 0.115 3.885
4 N -0.298 5.298
5 N -0.306 5.306
6 C 0.224 3.776
7 C -0.547 4.547
8 H 0.082 0.918
9 C 0.082 3.918
10 N -0.881 5.881
11 Si 0.871 3.129
12 H -0.269 1.269
13 H -0.278 1.278
14 H -0.263 1.263
15 C 0.157 3.843
16 C -0.074 4.074
17 C -0.145 4.145
18 C -0.367 4.367
19 C 0.418 3.582
20 O -0.491 6.491
21 H 0.057 0.943
22 H 0.055 0.945
23 H 0.051 0.949
24 H 0.071 0.929
25 H 0.092 0.908
26 H 0.054 0.946
27 H 0.048 0.952
28 H 0.271 0.729
29 H 0.097 0.903
30 H 0.089 0.911
31 H 0.055 0.945
32 H 0.057 0.943
33 H 0.065 0.935
34 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.101 -0.546 8.654 12.570
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.082 4.082
3 C -0.052 4.052
4 N -0.118 5.118
5 N -0.080 5.080
6 C 0.105 3.895
7 C -0.585 4.585
8 H 0.100 0.900
9 C -0.123 4.123
10 N -0.518 5.518
11 Si 0.697 3.303
12 H -0.195 1.195
13 H -0.203 1.203
14 H -0.188 1.188
15 C 0.019 3.981
16 C -0.113 4.113
17 C -0.203 4.203
18 C -0.380 4.380
19 C 0.279 3.721
20 O -0.367 6.367
21 H 0.076 0.924
22 H 0.074 0.926
23 H 0.070 0.930
24 H 0.090 0.910
25 H 0.110 0.890
26 H 0.072 0.928
27 H 0.066 0.934
28 H 0.081 0.919
29 H 0.115 0.885
30 H 0.108 0.892
31 H 0.074 0.926
32 H 0.077 0.923
33 H 0.084 0.916
34 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -9.085 -0.882 7.235 11.647
hybrid contribution -0.112 1.015 0.125 1.028
sum -9.197 0.133 7.360 11.780
Atomic orbital electron populations
1.21598 0.94635 1.01358 1.01800 1.19983 0.95934 0.88951 1.03367
1.22398 0.96591 0.96561 0.89683 1.77138 1.20990 0.90865 1.22792
1.48871 1.44018 1.10859 1.04273 1.20159 0.98354 0.81430 0.89563
1.21094 0.90537 1.14820 1.32091 0.90003 1.24790 0.94927 0.97409
0.95158 1.69862 1.10212 1.35771 1.35918 0.86919 0.81015 0.82603
0.79764 1.19466 1.20282 1.18791 1.21732 0.94847 0.95925 0.85622
1.20388 0.99315 0.93033 0.98527 1.21729 0.97256 0.99332 1.01996
1.20808 1.24512 0.95782 0.96897 1.22784 0.72045 0.88011 0.89225
1.90436 1.36790 1.22996 1.86525 0.92426 0.92615 0.92956 0.90988
0.89010 0.92774 0.93449 0.91914 0.88472 0.89207 0.92551 0.92340
0.91552 0.89628
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.91 9.89 37.16 0.37 -1.55 16
2 C -0.04 -0.70 5.97 -27.88 -0.17 -0.87 16
3 C 0.11 2.24 6.53 -81.95 -0.53 1.70 16
4 N -0.30 -6.61 12.49 33.94 0.42 -6.19 16
5 N -0.31 -6.65 3.56 -57.70 -0.21 -6.85 16
6 C 0.22 5.08 4.85 -5.19 -0.03 5.06 16
7 C -0.55 -14.69 9.94 -34.44 -0.34 -15.03 16
8 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16
9 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16
10 N -0.88 -25.38 13.96 55.43 0.77 -24.61 16
11 Si 0.87 19.34 27.47 -169.99 -4.67 14.67 16
12 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16
13 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16
14 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16
15 C 0.16 2.87 6.27 -81.51 -0.51 2.36 16
16 C -0.07 -1.05 5.74 -27.88 -0.16 -1.21 16
17 C -0.15 -1.69 9.89 37.16 0.37 -1.32 16
18 C -0.37 -6.59 6.12 -105.15 -0.64 -7.24 16
19 C 0.42 6.37 11.38 34.13 0.39 6.76 16
20 O -0.49 -8.56 15.75 5.53 0.09 -8.47 16
21 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16
22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16
24 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16
25 H 0.09 1.49 6.56 -51.93 -0.34 1.15 16
26 H 0.05 1.26 7.20 -51.93 -0.37 0.89 16
27 H 0.05 0.97 7.05 -51.93 -0.37 0.61 16
28 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16
29 H 0.10 1.53 7.71 -51.93 -0.40 1.13 16
30 H 0.09 1.03 7.62 -51.93 -0.40 0.63 16
31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16
32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16
34 H 0.09 0.97 7.63 -52.49 -0.40 0.57 16
LS Contribution 293.15 15.07 4.42 4.42
Total: -1.00 -30.95 293.15 -5.35 -36.30
By element:
Atomic # 1 Polarization: 4.78 SS G_CDS: -4.83 Total: -0.05 kcal
Atomic # 6 Polarization: -7.86 SS G_CDS: -1.36 Total: -9.22 kcal
Atomic # 7 Polarization: -38.64 SS G_CDS: 0.99 Total: -37.65 kcal
Atomic # 8 Polarization: -8.56 SS G_CDS: 0.09 Total: -8.47 kcal
Atomic # 14 Polarization: 19.34 SS G_CDS: -4.67 Total: 14.67 kcal
Total LS contribution 4.42 Total: 4.42 kcal
Total: -30.95 -5.35 -36.30 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000230797091.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.093 kcal
(2) G-P(sol) polarization free energy of solvation -30.946 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.147 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.355 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.301 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.792 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds