Wall clock time and date at job start Mon Mar 30 2020 03:05:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.50703 * 109.46658 * 2 1
4 4 N 1.30368 * 126.00783 * 270.02173 * 3 2 1
5 5 N 1.39910 * 109.00742 * 179.72554 * 4 3 2
6 6 C 1.46499 * 125.70843 * 180.29084 * 5 4 3
7 7 C 1.50699 * 109.47513 * 270.16220 * 6 5 4
8 8 H 1.08000 * 120.00087 * 359.97438 * 7 6 5
9 9 C 1.37879 * 120.00132 * 179.97438 * 7 6 5
10 10 N 1.31513 * 119.99662 * 179.97438 * 9 7 6
11 11 Si 1.86797 * 119.99937 * 0.02562 * 9 7 6
12 12 H 1.48503 * 109.46754 * 89.99766 * 11 9 7
13 13 H 1.48495 * 109.47177 * 209.99524 * 11 9 7
14 14 H 1.48497 * 109.46988 * 329.99940 * 11 9 7
15 15 C 1.34125 * 108.58974 * 0.43317 * 5 4 3
16 16 C 1.50703 * 126.31635 * 179.84399 * 15 5 4
17 17 C 1.53000 * 109.46912 * 89.71309 * 16 15 5
18 18 C 1.38450 * 107.37141 * 359.58053 * 15 5 4
19 19 C 1.46667 * 126.48112 * 180.26695 * 18 15 5
20 20 O 1.21315 * 120.00604 * 179.97438 * 19 18 15
21 21 H 1.08999 * 109.46800 * 180.02562 * 1 2 3
22 22 H 1.09001 * 109.47388 * 299.99745 * 1 2 3
23 23 H 1.08999 * 109.47048 * 60.00442 * 1 2 3
24 24 H 1.08997 * 109.47078 * 239.99858 * 2 1 3
25 25 H 1.08999 * 109.47048 * 119.99558 * 2 1 3
26 26 H 1.09005 * 109.46692 * 30.15927 * 6 5 4
27 27 H 1.09001 * 109.47367 * 150.15525 * 6 5 4
28 28 H 0.97005 * 119.99850 * 180.02562 * 10 9 7
29 29 H 1.09002 * 109.47152 * 329.71080 * 16 15 5
30 30 H 1.09001 * 109.46980 * 209.71181 * 16 15 5
31 31 H 1.09001 * 109.47194 * 299.99742 * 17 16 15
32 32 H 1.08992 * 109.47399 * 59.99914 * 17 16 15
33 33 H 1.09004 * 109.46724 * 180.02562 * 17 16 15
34 34 H 1.08000 * 119.99898 * 359.97438 * 19 18 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 7 2.2873 2.1436 -1.0546
5 7 2.7274 3.4072 -0.6455
6 6 3.1079 4.5088 -1.5331
7 6 4.5796 4.4180 -1.8442
8 1 5.1724 3.6198 -1.4225
9 6 5.1694 5.3540 -2.6671
10 7 6.4538 5.2750 -2.9380
11 14 4.1442 6.7350 -3.3958
12 1 4.1577 7.9003 -2.4753
13 1 4.7130 7.1343 -4.7081
14 1 2.7469 6.2684 -3.5832
15 6 2.7456 3.4402 0.6952
16 6 3.1583 4.6080 1.5537
17 6 1.9376 5.4833 1.8450
18 6 2.3097 2.2055 1.1451
19 6 2.1629 1.7892 2.5437
20 8 1.7681 0.6724 2.8060
21 1 -0.3633 -1.0277 0.0005
22 1 -0.3634 0.5138 0.8900
23 1 -0.3633 0.5138 -0.8900
24 1 1.8934 -0.5138 -0.8900
25 1 1.8934 -0.5138 0.8900
26 1 2.5362 4.4434 -2.4589
27 1 2.8980 5.4595 -1.0429
28 1 6.8689 5.9337 -3.5167
29 1 3.9107 5.1968 1.0289
30 1 3.5740 4.2404 2.4918
31 1 1.5219 5.8509 0.9069
32 1 1.1853 4.8945 2.3698
33 1 2.2362 6.3282 2.4656
34 1 2.4063 2.4767 3.3402
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000230797091.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:05:56
Heat of formation + Delta-G solvation = -6.194633 kcal
Electronic energy + Delta-G solvation = -16757.682887 eV
Core-core repulsion = 14076.815967 eV
Total energy + Delta-G solvation = -2680.866921 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-42.38995 -39.34777 -36.34270 -35.16655 -34.28749 -32.82927 -30.39391 -29.39748
-25.66965 -25.35631 -24.23129 -23.00194 -20.59463 -20.13776 -19.29890 -17.62651
-16.96358 -16.46298 -16.15315 -15.72130 -15.26949 -15.03386 -14.86610 -14.62853
-14.56568 -14.19922 -13.96651 -13.50471 -13.33301 -12.84173 -12.63700 -12.58276
-12.30305 -12.07512 -12.05159 -11.96685 -11.86027 -11.52434 -10.93842 -10.44007
-10.12530 -9.46237 -8.45571 -6.58166 0.44670 1.18692 1.31372 1.33669
1.43501 1.65887 2.22317 2.33060 2.86431 3.47690 3.55233 3.78206
3.98919 4.15454 4.28977 4.38408 4.43888 4.45305 4.58174 4.66282
4.77772 4.80052 4.93751 5.01150 5.06534 5.13824 5.14537 5.28579
5.34205 5.40015 5.66434 5.84938 6.21318 6.45314 6.72005 6.85255
7.06251 8.70821
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.028381 B = 0.007434 C = 0.006678
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 986.323601 B = 3765.788625 C = 4191.682991
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.043 4.043
3 C 0.105 3.895
4 N -0.347 5.347
5 N -0.335 5.335
6 C 0.235 3.765
7 C -0.555 4.555
8 H 0.025 0.975
9 C 0.026 3.974
10 N -0.933 5.933
11 Si 0.947 3.053
12 H -0.245 1.245
13 H -0.278 1.278
14 H -0.247 1.247
15 C 0.159 3.841
16 C -0.075 4.075
17 C -0.139 4.139
18 C -0.378 4.378
19 C 0.426 3.574
20 O -0.511 6.511
21 H 0.084 0.916
22 H 0.051 0.949
23 H 0.045 0.955
24 H 0.071 0.929
25 H 0.093 0.907
26 H 0.047 0.953
27 H 0.076 0.924
28 H 0.275 0.725
29 H 0.076 0.924
30 H 0.123 0.877
31 H 0.041 0.959
32 H 0.072 0.928
33 H 0.093 0.907
34 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.933 0.793 10.382 15.098
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C -0.082 4.082
3 C -0.062 4.062
4 N -0.168 5.168
5 N -0.110 5.110
6 C 0.116 3.884
7 C -0.593 4.593
8 H 0.044 0.956
9 C -0.175 4.175
10 N -0.571 5.571
11 Si 0.768 3.232
12 H -0.169 1.169
13 H -0.204 1.204
14 H -0.171 1.171
15 C 0.022 3.978
16 C -0.114 4.114
17 C -0.197 4.197
18 C -0.391 4.391
19 C 0.289 3.711
20 O -0.388 6.388
21 H 0.102 0.898
22 H 0.070 0.930
23 H 0.064 0.936
24 H 0.090 0.910
25 H 0.111 0.889
26 H 0.065 0.935
27 H 0.094 0.906
28 H 0.084 0.916
29 H 0.095 0.905
30 H 0.141 0.859
31 H 0.060 0.940
32 H 0.091 0.909
33 H 0.112 0.888
34 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges -10.930 0.443 8.997 14.163
hybrid contribution 0.525 0.459 -0.336 0.774
sum -10.405 0.902 8.661 13.568
Atomic orbital electron populations
1.21534 0.92773 1.02945 1.01209 1.20096 0.97473 0.87261 1.03369
1.23044 0.95555 0.97603 0.89970 1.77042 1.23195 0.91830 1.24732
1.48764 1.46075 1.10678 1.05445 1.19876 0.95117 0.83228 0.90198
1.21173 0.92584 1.13345 1.32180 0.95634 1.25798 0.96094 1.00385
0.95212 1.70023 1.12566 1.37392 1.37142 0.85735 0.79510 0.79086
0.78908 1.16876 1.20369 1.17095 1.22510 0.93217 0.97351 0.84683
1.20629 1.00115 0.91817 0.98791 1.21731 0.96166 0.99852 1.01970
1.21323 1.24114 0.95341 0.98280 1.23367 0.70773 0.88254 0.88724
1.90439 1.37629 1.24280 1.86476 0.89763 0.93010 0.93620 0.90996
0.88864 0.93482 0.90584 0.91586 0.90513 0.85870 0.93975 0.90945
0.88779 0.84061
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.42 9.89 71.98 0.71 -2.71 16
2 C -0.04 -1.38 5.97 29.85 0.18 -1.20 16
3 C 0.11 4.13 6.53 43.60 0.28 4.41 16
4 N -0.35 -15.87 12.49 -46.54 -0.58 -16.45 16
5 N -0.34 -14.74 3.56 -336.45 -1.20 -15.93 16
6 C 0.24 10.78 4.85 85.63 0.42 11.19 16
7 C -0.55 -30.91 9.94 25.60 0.25 -30.65 16
8 H 0.03 1.66 8.06 -2.91 -0.02 1.63 16
9 C 0.03 1.40 5.47 84.66 0.46 1.86 16
10 N -0.93 -55.52 13.96 21.45 0.30 -55.23 16
11 Si 0.95 39.49 27.47 68.60 1.88 41.37 16
12 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16
13 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16
14 H -0.25 -9.62 6.54 99.48 0.65 -8.97 16
15 C 0.16 5.67 6.27 42.26 0.26 5.93 16
16 C -0.07 -1.94 5.74 29.85 0.17 -1.77 16
17 C -0.14 -2.75 9.89 71.98 0.71 -2.04 16
18 C -0.38 -13.11 6.12 -20.21 -0.12 -13.23 16
19 C 0.43 11.70 11.38 70.02 0.80 12.49 16
20 O -0.51 -16.56 15.75 -3.14 -0.05 -16.61 16
21 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16
22 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16
23 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16
24 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16
25 H 0.09 2.96 6.56 -2.39 -0.02 2.94 16
26 H 0.05 2.20 7.20 -2.38 -0.02 2.18 16
27 H 0.08 3.02 7.05 -2.39 -0.02 3.00 16
28 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16
29 H 0.08 2.34 7.71 -2.39 -0.02 2.32 16
30 H 0.12 2.33 7.62 -2.39 -0.02 2.31 16
31 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16
32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16
33 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16
34 H 0.14 2.43 7.63 -2.91 -0.02 2.41 16
Total: -1.00 -71.20 293.15 5.51 -65.68
By element:
Atomic # 1 Polarization: 11.84 SS G_CDS: 1.03 Total: 12.87 kcal
Atomic # 6 Polarization: -19.83 SS G_CDS: 4.13 Total: -15.70 kcal
Atomic # 7 Polarization: -86.13 SS G_CDS: -1.48 Total: -87.61 kcal
Atomic # 8 Polarization: -16.56 SS G_CDS: -0.05 Total: -16.61 kcal
Atomic # 14 Polarization: 39.49 SS G_CDS: 1.88 Total: 41.37 kcal
Total: -71.20 5.51 -65.68 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000230797091.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 59.489 kcal
(2) G-P(sol) polarization free energy of solvation -71.195 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.707 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.512 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.683 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.195 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds