Wall clock time and date at job start Mon Mar 30 2020 03:45:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08998 * 109.47658 * 2 1
4 4 C 1.53002 * 109.47326 * 120.00279 * 2 1 3
5 5 N 1.46892 * 109.47561 * 174.99734 * 4 2 1
6 6 N 1.46502 * 109.47008 * 240.00095 * 2 1 3
7 7 C 1.39780 * 120.00186 * 85.00571 * 6 2 1
8 8 C 1.38953 * 120.00626 * 0.26838 * 7 6 2
9 9 C 1.38011 * 119.99473 * 180.23480 * 8 7 6
10 10 C 1.38889 * 120.00542 * 359.49883 * 9 8 7
11 11 O 1.35806 * 119.99420 * 180.27611 * 10 9 8
12 12 C 1.34807 * 116.99757 * 354.45180 * 11 10 9
13 13 H 1.08004 * 119.99812 * 5.06523 * 12 11 10
14 14 C 1.38621 * 120.00005 * 185.05742 * 12 11 10
15 15 N 1.31579 * 119.99937 * 0.02562 * 14 12 11
16 16 Si 1.86799 * 120.00036 * 180.02562 * 14 12 11
17 17 H 1.48501 * 109.47182 * 60.00341 * 16 14 12
18 18 H 1.48502 * 109.47043 * 179.97438 * 16 14 12
19 19 H 1.48500 * 109.47140 * 300.00008 * 16 14 12
20 20 C 1.38904 * 120.01567 * 0.24923 * 10 9 8
21 21 C 1.38009 * 120.00120 * 0.02562 * 20 10 9
22 22 H 1.08997 * 109.46935 * 300.00075 * 1 2 3
23 23 H 1.09005 * 109.46839 * 59.99735 * 1 2 3
24 24 H 1.08997 * 109.47544 * 179.97438 * 1 2 3
25 25 H 1.09000 * 109.47217 * 295.00034 * 4 2 1
26 26 H 1.09006 * 109.46971 * 54.99580 * 4 2 1
27 27 H 1.00905 * 111.00160 * 56.04524 * 5 4 2
28 28 H 1.00899 * 111.00650 * 179.97438 * 5 4 2
29 29 H 0.97007 * 120.00389 * 264.99550 * 6 2 1
30 30 H 1.08004 * 120.00250 * 0.02562 * 8 7 6
31 31 H 1.08000 * 119.99170 * 179.76867 * 9 8 7
32 32 H 0.97003 * 120.00502 * 179.97438 * 15 14 12
33 33 H 1.07995 * 119.99933 * 180.02562 * 20 10 9
34 34 H 1.08000 * 120.00392 * 179.97438 * 21 20 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7213 1.2492
5 7 3.5040 -0.8268 1.1904
6 7 2.0183 -0.6906 -1.1962
7 6 2.1519 0.0067 -2.4003
8 6 1.8269 1.3563 -2.4614
9 6 1.9543 2.0434 -3.6515
10 6 2.4172 1.3886 -4.7855
11 8 2.5478 2.0663 -5.9551
12 6 2.1038 3.3390 -5.9778
13 1 1.7437 3.8015 -5.0707
14 6 2.1097 4.0540 -7.1653
15 7 2.5481 3.4903 -8.2705
16 14 1.4952 5.8177 -7.1966
17 1 2.3164 6.6445 -6.2761
18 1 1.6057 6.3560 -8.5763
19 1 0.0756 5.8551 -6.7624
20 6 2.7471 0.0407 -4.7235
21 6 2.6145 -0.6482 -3.5350
22 1 -0.3633 0.5138 0.8900
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3634 -1.0276 -0.0005
25 1 1.7517 -0.1584 2.1370
26 1 1.6053 -1.7199 1.2951
27 1 3.9280 0.0824 1.0824
28 1 3.8656 -1.2995 2.0052
29 1 2.2490 -1.6318 -1.1527
30 1 1.4714 1.8668 -1.5785
31 1 1.6981 3.0915 -3.6999
32 1 2.5519 3.9905 -9.1016
33 1 3.1075 -0.4681 -5.6053
34 1 2.8707 -1.6963 -3.4868
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000235112789.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:45:22
Heat of formation + Delta-G solvation = 0.558326 kcal
Electronic energy + Delta-G solvation = -16184.199518 eV
Core-core repulsion = 13503.625428 eV
Total energy + Delta-G solvation = -2680.574090 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.06136 -37.62055 -35.82968 -33.10735 -31.98448 -30.52208 -29.92120 -26.88115
-25.19145 -24.68974 -22.41270 -21.10444 -20.04864 -17.85131 -17.26579 -16.27255
-15.87819 -15.29159 -14.55863 -14.34110 -14.22350 -13.61788 -13.46118 -13.25271
-12.90341 -12.59758 -12.41640 -12.21102 -11.82144 -11.49510 -11.37739 -11.11900
-10.91641 -10.80674 -10.51186 -10.30839 -9.14538 -9.09940 -8.87094 -8.36105
-8.08098 -6.28308 -6.24731 -3.83433 2.28973 2.68016 3.21774 3.23168
3.25510 3.90471 4.10788 4.38878 4.74630 4.79013 5.07951 5.25538
5.31680 5.37866 5.50680 5.59465 5.68253 5.73969 5.86909 5.97425
6.22519 6.29914 6.40986 6.59673 6.88884 6.94014 7.08126 7.20676
7.22868 7.40697 7.55325 7.72748 8.13447 8.17875 8.43116 9.19418
9.95580 10.92419
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.041123 B = 0.005072 C = 0.004755
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 680.715295 B = 5518.914058 C = 5887.732094
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.157 3.843
3 H 0.070 0.930
4 C 0.054 3.946
5 N -0.844 5.844
6 N -0.740 5.740
7 C 0.133 3.867
8 C -0.150 4.150
9 C -0.190 4.190
10 C 0.109 3.891
11 O -0.191 6.191
12 C -0.385 4.385
13 H 0.086 0.914
14 C 0.036 3.964
15 N -0.871 5.871
16 Si 0.937 3.063
17 H -0.272 1.272
18 H -0.279 1.279
19 H -0.272 1.272
20 C -0.147 4.147
21 C -0.146 4.146
22 H 0.054 0.946
23 H 0.064 0.936
24 H 0.055 0.945
25 H 0.033 0.967
26 H 0.072 0.928
27 H 0.343 0.657
28 H 0.338 0.662
29 H 0.393 0.607
30 H 0.105 0.895
31 H 0.125 0.875
32 H 0.267 0.733
33 H 0.116 0.884
34 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.981 -5.993 17.082 18.210
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C 0.050 3.950
3 H 0.088 0.912
4 C -0.077 4.077
5 N -0.374 5.374
6 N -0.374 5.374
7 C 0.035 3.965
8 C -0.173 4.173
9 C -0.210 4.210
10 C 0.057 3.943
11 O -0.096 6.096
12 C -0.462 4.462
13 H 0.104 0.896
14 C -0.167 4.167
15 N -0.508 5.508
16 Si 0.762 3.238
17 H -0.197 1.197
18 H -0.205 1.205
19 H -0.197 1.197
20 C -0.167 4.167
21 C -0.168 4.168
22 H 0.073 0.927
23 H 0.083 0.917
24 H 0.074 0.926
25 H 0.051 0.949
26 H 0.091 0.909
27 H 0.156 0.844
28 H 0.150 0.850
29 H 0.227 0.773
30 H 0.123 0.877
31 H 0.142 0.858
32 H 0.077 0.923
33 H 0.134 0.866
34 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges -2.045 -6.275 16.067 17.370
hybrid contribution -0.319 1.207 0.984 1.589
sum -2.363 -5.068 17.051 17.945
Atomic orbital electron populations
1.22297 0.96453 1.02089 1.02029 1.20669 0.92884 0.96510 0.84978
0.91236 1.22084 0.88863 1.00590 0.96170 1.58579 1.05069 1.26721
1.46989 1.44060 1.75812 1.11570 1.05967 1.17411 1.01406 0.91590
0.86109 1.20288 1.06810 0.92733 0.97444 1.20981 1.06818 1.00649
0.92545 1.19226 0.96318 0.91609 0.87134 1.83985 1.72045 1.25770
1.27777 1.21171 1.42702 0.86144 0.96232 0.89615 1.25193 0.97394
0.99830 0.94289 1.70039 1.44259 1.37137 0.99319 0.85854 0.79194
0.81045 0.77705 1.19745 1.20452 1.19736 1.20008 1.06859 0.92129
0.97720 1.20111 1.06269 0.98704 0.91752 0.92665 0.91650 0.92598
0.94871 0.90907 0.84424 0.85045 0.77290 0.87734 0.85760 0.92329
0.86595 0.87257
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.82 9.44 37.16 0.35 -1.47 16
2 C 0.16 1.79 2.51 -67.93 -0.17 1.62 16
3 H 0.07 0.86 6.47 -51.93 -0.34 0.53 16
4 C 0.05 0.48 6.34 -3.83 -0.02 0.46 16
5 N -0.84 -7.66 9.35 -10.37 -0.10 -7.75 16
6 N -0.74 -10.25 4.98 -52.12 -0.26 -10.51 16
7 C 0.13 2.37 6.64 -83.71 -0.56 1.81 16
8 C -0.15 -2.86 8.86 -39.40 -0.35 -3.21 16
9 C -0.19 -4.29 9.16 -39.42 -0.36 -4.65 16
10 C 0.11 2.75 6.65 -39.09 -0.26 2.49 16
11 O -0.19 -5.66 9.76 -0.06 0.00 -5.66 16
12 C -0.39 -11.18 9.48 30.87 0.29 -10.89 16
13 H 0.09 2.30 5.20 -52.48 -0.27 2.03 16
14 C 0.04 1.01 5.49 -17.52 -0.10 0.92 16
15 N -0.87 -26.46 13.67 55.48 0.76 -25.70 16
16 Si 0.94 21.24 29.55 -169.99 -5.02 16.22 16
17 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16
18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16
19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16
20 C -0.15 -3.25 9.98 -39.42 -0.39 -3.64 16
21 C -0.15 -2.74 9.89 -39.40 -0.39 -3.13 16
22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16
23 H 0.06 0.84 7.74 -51.93 -0.40 0.44 16
24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16
25 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16
26 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16
27 H 0.34 3.16 8.99 -39.29 -0.35 2.81 16
28 H 0.34 2.36 9.08 -39.29 -0.36 2.00 16
29 H 0.39 5.13 8.62 -40.82 -0.35 4.78 16
30 H 0.10 1.74 6.13 -52.48 -0.32 1.42 16
31 H 0.12 2.81 5.63 -52.49 -0.30 2.52 16
32 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16
33 H 0.12 2.47 8.06 -52.49 -0.42 2.04 16
34 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16
LS Contribution 287.93 15.07 4.34 4.34
Total: -1.00 -31.81 287.93 -6.60 -38.41
By element:
Atomic # 1 Polarization: 14.71 SS G_CDS: -4.36 Total: 10.35 kcal
Atomic # 6 Polarization: -17.74 SS G_CDS: -1.96 Total: -19.70 kcal
Atomic # 7 Polarization: -44.37 SS G_CDS: 0.40 Total: -43.97 kcal
Atomic # 8 Polarization: -5.66 SS G_CDS: 0.00 Total: -5.66 kcal
Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal
Total LS contribution 4.34 Total: 4.34 kcal
Total: -31.81 -6.60 -38.41 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000235112789.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.971 kcal
(2) G-P(sol) polarization free energy of solvation -31.812 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.159 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.600 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.413 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.558 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds